View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_72 (Length: 287)
Name: NF16378_high_72
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_72 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 4662297 - 4662028
Alignment:
| Q |
1 |
acataagcctcgaattgcaaatttcttcttctgagcactccaaataccacaaactaaagttactccacacacgactcatttaaagttgaagtaataatca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4662297 |
acataagcctcgaattgcaaatttcttcttctgagcactccaaataccacaaactaaagttactccacacacgactcatttaaggttgaagtaataatca |
4662198 |
T |
|
| Q |
101 |
gacaaaatctgcattgcaaccacaaacatgagacatttaaaatccaacaaagtgcaacatataatgagttgtcactaccagattgtagtacgtaattaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4662197 |
gacaaaatctgcattgcaaccacaaacatgagacatttaaaatccaacaaagtgcaacatataatgagttgtcactaccagattgtagtacgtaattaca |
4662098 |
T |
|
| Q |
201 |
tggacaatagaagcaacagacactgacaaagaaaacaattaatatgggaaaaactgaaacattcacactg |
270 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4662097 |
tggaaaatagaagcaacagacactgacaaagaaaacaattaatatgggaaaaactgaaacattcacactg |
4662028 |
T |
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