View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_high_73 (Length: 284)

Name: NF16378_high_73
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_high_73
NF16378_high_73
[»] chr1 (2 HSPs)
chr1 (121-284)||(39902184-39902347)
chr1 (7-55)||(39902135-39902183)
[»] chr3 (2 HSPs)
chr3 (140-233)||(6588246-6588342)
chr3 (212-281)||(50670106-50670175)
[»] chr7 (4 HSPs)
chr7 (212-281)||(25690722-25690790)
chr7 (212-280)||(45773204-45773271)
chr7 (213-281)||(28557250-28557317)
chr7 (153-281)||(5815124-5815254)
[»] chr2 (3 HSPs)
chr2 (230-281)||(21488869-21488920)
chr2 (212-281)||(12670772-12670840)
chr2 (212-256)||(33710582-33710625)
[»] chr6 (2 HSPs)
chr6 (156-232)||(20694539-20694618)
chr6 (212-281)||(33617655-33617723)
[»] chr4 (1 HSPs)
chr4 (145-232)||(40423240-40423330)


Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 121 - 284
Target Start/End: Original strand, 39902184 - 39902347
Alignment:
Q  121 aatccataacgaaaactgttcttctcccttttaaaattgttcactcccttcatctagtggaagttaactcactcttgacatttttcaacgattaactcac 220  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||| |||||||||||||    
T  39902184 aatccataacgaaaattgttcttcccccttttaaaattgttcactcccttcatctagtgggagttaattcactctcgacatttttcgacgattaactcac 39902283  T
Q  221 gctgacactttttaaaatcggttcaatcattttctacgccagttcaaccgatcctaaaagttcc 284  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39902284 gctgacactttttaaaatcggttcaatcattttttacgccagttcaaccgatcctaaaagttcc 39902347  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 39902135 - 39902183
Alignment:
Q  7 gtgagatgaagatcgcggtatttatcatatgagaaggaacgctggcatg 55  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||    
T  39902135 gtgagatgtagatcgcggtatttatcatatgagaaggaacgctagcatg 39902183  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 6588246 - 6588342
Alignment:
Q  140 tcttctcccttttaaaattgttcactcccttcatctagtggaagttaactcactcttgacatttttcaac---gattaactcacgctgacacttttt 233  Q
    |||||||||||| ||||||||||| |||||| | |||| || ||||||||||| |||| ||||||||| |     ||||||||||||||||||||||    
T  6588246 tcttctccctttcaaaattgttcattcccttgacctagcggtagttaactcacgcttggcatttttcagcagtagttaactcacgctgacacttttt 6588342  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 50670175 - 50670106
Alignment:
Q  212 ttaactcacgctgacactttttaaaatcggttcaatcattttctacgccagttcaaccgatcctaaaagt 281  Q
    ||||| |||||||| ||||||||| |||| |||||||||||| ||||  ||||||||||||  |||||||    
T  50670175 ttaacccacgctgaaactttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagt 50670106  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 25690722 - 25690790
Alignment:
Q  212 ttaactcacgctgacactttttaaaatcggttcaatcattttctacgccagttcaaccgatcctaaaagt 281  Q
    ||||||||||||||||||||||| | |||||||||||| ||| || ||| |||||||||||| |||||||    
T  25690722 ttaactcacgctgacactttttaga-tcggttcaatcactttttaagccggttcaaccgatcttaaaagt 25690790  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 45773204 - 45773271
Alignment:
Q  212 ttaactcacgctgacactttttaaaatcggttcaatcattttctacgccagttcaaccgatcctaaaag 280  Q
    ||||||||||||||||||||||| | |||||||||||| ||| |||||| |||||||| ||| ||||||    
T  45773204 ttaactcacgctgacactttttaga-tcggttcaatcactttttacgccggttcaaccaatcttaaaag 45773271  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 28557317 - 28557250
Alignment:
Q  213 taactcacgctgacactttttaaaatcggttcaatcattttctacgccagttcaaccgatcctaaaagt 281  Q
    |||||||||||||||||||| || |||||||||||||| || ||  |||||||||| |||| |||||||    
T  28557317 taactcacgctgacactttt-aagatcggttcaatcatattttaacccagttcaactgatcttaaaagt 28557250  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 281
Target Start/End: Complemental strand, 5815254 - 5815124
Alignment:
Q  153 aaaattgttcactcccttcatctagtggaagttaactcactcttgacatttttcaacg---attaactcacgctgacactttttaaaatcggttcaatca 249  Q
    ||||||||||| |||||| ||  | | | ||||||||||| ||||| |||||||||||    ||||||||| ||  |||||||| |||| ||||||||||    
T  5815254 aaaattgttcattcccttgattcaataggagttaactcacgcttgatatttttcaacggttgttaactcacactagcacttttt-aaattggttcaatca 5815156  T
Q  250 ttttctacgccagttcaaccgatcctaaaagt 281  Q
     ||| || | ||| |||||||||| |||||||    
T  5815155 ctttttaagtcaggtcaaccgatcttaaaagt 5815124  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 21488869 - 21488920
Alignment:
Q  230 ttttaaaatcggttcaatcattttctacgccagttcaaccgatcctaaaagt 281  Q
    |||||| ||||||||||||||||| || | |||||||||||||| |||||||    
T  21488869 ttttaagatcggttcaatcattttttaagtcagttcaaccgatcttaaaagt 21488920  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 12670772 - 12670840
Alignment:
Q  212 ttaactcacgctgacactttttaaaatcggttcaatcattttctacgccagttcaaccgatcctaaaagt 281  Q
    ||||||||||||||||| |||||| ||||||||||||| ||| || |||   |||||||||| |||||||    
T  12670772 ttaactcacgctgacac-ttttaagatcggttcaatcaatttttaagccgactcaaccgatcttaaaagt 12670840  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 33710582 - 33710625
Alignment:
Q  212 ttaactcacgctgacactttttaaaatcggttcaatcattttcta 256  Q
    |||||| |||||||||||||| || ||||||||||||||||||||    
T  33710582 ttaacttacgctgacactttt-aagatcggttcaatcattttcta 33710625  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 20694539 - 20694618
Alignment:
Q  156 attgttcactcccttcatctagtggaagttaactcactcttgacatttttcaacga---ttaactcacgctgacactttt 232  Q
    |||||||| ||||||||||||| |||| ||||||||| ||  |||||||||| |||   |||||||||| || |||||||    
T  20694539 attgttcattcccttcatctagcggaaattaactcacgctcaacatttttcagcgatagttaactcacggtggcactttt 20694618  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 33617655 - 33617723
Alignment:
Q  212 ttaactcacgctgacactttttaaaatcggttcaatcattttctacgccagttcaaccgatcctaaaagt 281  Q
    |||||||||||||||| ||||||| ||||||||||||| || |||  || |||||| ||||| |||||||    
T  33617655 ttaactcacgctgaca-tttttaagatcggttcaatcacttgctaatccggttcaatcgatcttaaaagt 33617723  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 40423240 - 40423330
Alignment:
Q  145 tcccttttaaaattgttcactcccttcatctagtggaagttaactcactcttgacatttttcaacg---attaactcacgctgacactttt 232  Q
    |||||||| |||||||||| || ||| ||  || | | |||||||||| |||||||||||||||||    |||||||| ||||||||||||    
T  40423240 tcccttttgaaattgttcattctcttaattcagcgtatgttaactcacgcttgacatttttcaacggaagttaactcatgctgacactttt 40423330  T

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