View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_high_8 (Length: 582)

Name: NF16378_high_8
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_high_8
NF16378_high_8
[»] chr4 (8 HSPs)
chr4 (1-568)||(44727735-44728302)
chr4 (34-302)||(42927004-42927275)
chr4 (35-302)||(47842649-47842916)
chr4 (440-568)||(47845231-47845361)
chr4 (438-564)||(47843064-47843190)
chr4 (440-566)||(42926733-42926854)
chr4 (437-564)||(47879387-47879514)
chr4 (81-243)||(47879700-47879865)
[»] chr6 (5 HSPs)
chr6 (36-308)||(21354112-21354388)
chr6 (443-568)||(21250976-21251102)
chr6 (441-568)||(21130924-21131052)
chr6 (68-156)||(21174349-21174437)
chr6 (49-135)||(21250659-21250745)
[»] chr5 (5 HSPs)
chr5 (442-563)||(808205-808326)
chr5 (129-301)||(807886-808058)
chr5 (443-563)||(39241854-39241974)
chr5 (129-302)||(39241534-39241707)
chr5 (2-83)||(39241416-39241497)


Alignment Details
Target: chr4 (Bit Score: 536; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Complemental strand, 44728302 - 44727735
Alignment:
Q  1 cgcttgtgagatggccggtctaaaagttatcagactgatgcctgaaccaacagcagtggctttgctttatgcacatcaacaactgcatgcttctgcttct 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44728302 cgcttgtgagatggccggtctaaaagttattagactgatgcctgaaccaacagcagtggctttgctttatgcacatcaacaactgcatgcttctgcttct 44728203  T
Q  101 tttcacgaggatatggacaatgaaagcaagaaaattgctctgattttcaatatggacgcgggttattgtgatgttgctattattgcaacagaaaaaggaa 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44728202 tctcacgaggatatggacaatgaaagcaagaaaattgctctgattttcaatatggacgcgggttattgtgatgttgctattattgcaacagaaaaaggaa 44728103  T
Q  201 aatgccaaataaaagcgttggcaggaagtgctattggtggagaagatttgcttggaaatatgatgtgtcatctctttcctgattatgaaaatatattcaa 300  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  44728102 aacgccaaataaaagcgttggcaggaagtgctattggtggagaagatttgcttggaaatatgatgtgtcatctctttcccgattacgaaaatatattcaa 44728003  T
Q  301 gagaaatgttcacggggacacagaaattacaaggatggcttctcttcgaagtatagtccacaacgcgattactaagctttcgtctgaggcaagtgttaag 400  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44728002 gagaaatgttcacagggacacagaaattacaaggatggcttctcttcgaagtatagtccacaacgcgattactaagctttcgtccgaggcaagtgttaag 44727903  T
Q  401 gtttatttaacgtcactcaatcgtagggatgtaacacgggaggagtttgaggaagtaaacaaagaggtgtttgaaaattgtgaaaggctaatcatccaat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44727902 gtttatttaacgtcactcaatcgtagggatgtaacacgggaggagtttgaggaagtaaacaaagaggtgtttgaaaattgtgaaaagctaatcatccaat 44727803  T
Q  501 gcatacaagatgcaaagatagaagttgagaatataaacgatgtgataattgtaggtggatgttgtaat 568  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44727802 gcatacaagatgcaaagatagaagttgagaatataaacgatgtgataattgtaggtggatgttgtaat 44727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 34 - 302
Target Start/End: Complemental strand, 42927275 - 42927004
Alignment:
Q  34 actgatgcctgaaccaacagcagtggctttgctttatgcacatcaacaactgcatgcttctgcttcttttcacgaggatatggacaatgaaagcaagaaa 133  Q
    |||||||||| |||||| ||||||||||||| |||||||||| |||||||||||  |||||||||||| ||  ||||||||| ||||  || | | ||||    
T  42927275 actgatgcctcaaccaatagcagtggctttgttttatgcacaacaacaactgcagacttctgcttcttctcttgaggatatgaacaaacaatgaacgaaa 42927176  T
Q  134 a---ttgctctgattttcaatatggacgcgggttattgtgatgttgctattattgcaacagaaaaaggaaaatgccaaataaaagcgttggcaggaagtg 230  Q
    |   |||||||  |||| |||||||| || |||||||||||||||||| | ||||| ||||||||||| |||   | |||||||||  || ||||||||     
T  42927175 aaagttgctctcgtttttaatatggatgctggttattgtgatgttgctgtcattgctacagaaaaagggaaacttcgaataaaagccctgacaggaagtc 42927076  T
Q  231 ctattggtggagaagatttgcttggaaatatgatgtgtcatctctttcctgattatgaaaatatattcaaga 302  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||| | |||||||||||||||    
T  42927075 ctattggtagagaagatttgcttgaaaatatgatttgtcatctcttacctgattctaaaaatatattcaaga 42927004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 35 - 302
Target Start/End: Original strand, 47842649 - 47842916
Alignment:
Q  35 ctgatgcctgaaccaacagcagtggctttgctttatgcacatcaacaactgcatgcttctgcttcttttcacgaggatatggacaatgaaagcaagaaaa 134  Q
    ||||||||| |||||||||||||||||||| | |||||||| |||||| |||  ||||||  ||||| |   |||||||||||||  |||||||| |||     
T  47842649 ctgatgcctcaaccaacagcagtggctttgttgtatgcacagcaacaaatgctggcttctttttcttgt---gaggatatggacagcgaaagcaataaag 47842745  T
Q  135 ttgctctgattttcaatatggacgcgggttattgtgatgttgctatta---ttgcaacagaaaaaggaaaatgccaaataaaagcgttggcaggaagtgc 231  Q
    | ||||| ||||||||||||||    |||||||||||||||||| | |   |||| |||| | ||||| |||||  ||| ||||| |||||||||||| |    
T  47842746 tagctctcattttcaatatggatttcggttattgtgatgttgctgtgactgttgctacagcagaaggagaatgcagaatgaaagctttggcaggaagttc 47842845  T
Q  232 tattggtggagaagatttgcttggaaatatgatgtgtcatctctttcctgattatgaaaatatattcaaga 302  Q
    || |||||||||||| |||||||  ||||||||  || ||||||| || |||| |||||||||||||||||    
T  47842846 tagtggtggagaagacttgcttgtgaatatgatacgttatctcttaccagattctgaaaatatattcaaga 47842916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 440 - 568
Target Start/End: Complemental strand, 47845361 - 47845231
Alignment:
Q  440 gaggagtttgaggaagtaaacaaagaggtgtttgaaaattgtgaaagg--ctaatcatccaatgcatacaagatgcaaagatagaagttgagaatataaa 537  Q
    |||||||||||||| |||||||||||||||||||| || |||||||||  ||||||||||||||| | || ||||||||| | |||  | ||||||||||    
T  47845361 gaggagtttgaggatgtaaacaaagaggtgtttgagaagtgtgaaaggggctaatcatccaatgcttgcatgatgcaaaggtggaaactaagaatataaa 47845262  T
Q  538 cgatgtgataattgtaggtggatgttgtaat 568  Q
     ||||||||||||||||||||||||||||||    
T  47845261 tgatgtgataattgtaggtggatgttgtaat 47845231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 438 - 564
Target Start/End: Original strand, 47843064 - 47843190
Alignment:
Q  438 gggaggagtttgaggaagtaaacaaagaggtgtttgaaaattgtgaaaggctaatcatccaatgcatacaagatgcaaagatagaagttgagaatataaa 537  Q
    |||||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||| || | ||||||||| | ||| |||||||  |||||||    
T  47843064 gggaggagtttgaggatgtaaataaagaggtgtttgaaaagtgtgaaaggctgatcatccaaagcttgcaagatgcagatataaaagttgatgatataaa 47843163  T
Q  538 cgatgtgataattgtaggtggatgttg 564  Q
     |||||||||||||| |||||||||||    
T  47843164 tgatgtgataattgttggtggatgttg 47843190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 440 - 566
Target Start/End: Complemental strand, 42926854 - 42926733
Alignment:
Q  440 gaggagtttgaggaagtaaacaaagaggtgtttgaaaattgtgaaaggctaatcatccaatgcatacaagatgcaaagatagaagttgagaatataaacg 539  Q
    ||||||||||| |||||||||||||| |||||||| ||  ||||    ||||||||||||||| | |||||||||||  |||| ||||||| |||||| |    
T  42926854 gaggagtttgacgaagtaaacaaagaagtgtttgagaagggtga----ctaatcatccaatgcttgcaagatgcaaaagtagacgttgagagtataaatg 42926759  T
Q  540 atgtgataattgtaggtggatgttgta 566  Q
    ||||||||||||||||| |||||||||    
T  42926758 atgtgataattgtaggt-gatgttgta 42926733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 437 - 564
Target Start/End: Complemental strand, 47879514 - 47879387
Alignment:
Q  437 cgggaggagtttgaggaagtaaacaaagaggtgtttgaaaattgtgaaaggctaatcatccaatgcatacaagatgcaaagatagaagttgagaatataa 536  Q
    |||||||||||||| || |||||| ||||||| |||||||  |||||||||||||||||||| ||| |  |||||||||||  | |   ||||||| |||    
T  47879514 cgggaggagtttgaagatgtaaactaagaggtatttgaaatatgtgaaaggctaatcatccagtgcttgaaagatgcaaagtgaaacactgagaatttaa 47879415  T
Q  537 acgatgtgataattgtaggtggatgttg 564  Q
    | ||||| |||||||| |||||||||||    
T  47879414 atgatgttataattgttggtggatgttg 47879387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 243
Target Start/End: Complemental strand, 47879865 - 47879700
Alignment:
Q  81 aactgcatgcttctgcttcttttcacgaggatatggacaatgaaagcaagaaaattgctc-tgattttcaatatggacgcgggttattgtgatgttgcta 179  Q
    ||||||| ||||||  ||||| ||| ||||||| ||||| ||||||||||||| | |||| | |||||||| |||||  |  |||||||||||||||||     
T  47879865 aactgcaggcttctagttcttctcatgaggataaggacagtgaaagcaagaaattggctcttcattttcaacatggattccagttattgtgatgttgctg 47879766  T
Q  180 ttattgc--aacagaaaaaggaaaatgccaaataaaagcgttggcaggaagtgctattggtggaga 243  Q
    | | |||   |||| |  |||| |||||||||||||||| |||| |||||  ||| ||||||||||    
T  47879765 tgactgctgtacagcaggaggagaatgccaaataaaagccttggtaggaaaggctgttggtggaga 47879700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 7e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 36 - 308
Target Start/End: Complemental strand, 21354388 - 21354112
Alignment:
Q  36 tgatgcctgaaccaacagcagtggctttgctttatgcacatcaacaactgcatgcttctgcttcttttcacgaggatatggacaatgaaagcaagaaaat 135  Q
    |||| ||| ||| ||||||||||||| || | |||||||| ||||||||||||||||||||||||| | | ||| ||||||| | |||||||| ||||||    
T  21354388 tgattcctcaactaacagcagtggctctgttgtatgcacaacaacaactgcatgcttctgcttcttctgatgagaatatggaaagtgaaagcacgaaaat 21354289  T
Q  136 t-gctctgattttcaatatggacgcgggttattgtgatgttgctattattgcaacagaaa---aaggaaaatgccaaataaaagcgttggcaggaagtgc 231  Q
    | ||||| ||||||| |||||| |   |||  |||||| ||| | |||||||  |   |    |||||||||| | ||||||| ||||| |||||||| |    
T  21354288 ttgctctcattttcagtatggatgtttgtttatgtgattttgttgttattgctgctatattggaaggaaaatgtcgaataaaatcgttgacaggaagtac 21354189  T
Q  232 tattggtggagaagatttgcttggaaatatgatgtgtcatctctttcctgattatgaaaatatattcaagagaaatg 308  Q
    ||||| ||||||||  || |  |||||||||||| |||||||||||||| ||| ||||||||||||||||| |||||    
T  21354188 tattgatggagaagtctttcaaggaaatatgatgcgtcatctctttcctaattctgaaaatatattcaagataaatg 21354112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 443 - 568
Target Start/End: Original strand, 21250976 - 21251102
Alignment:
Q  443 gagtttgaggaagtaaacaaagaggtgtttgaaaattgtgaaaggctaatcatccaatgc-atacaagatgcaaagatagaagttgagaatataaacgat 541  Q
    ||||||||||| ||| ||||||||||||||||  | |||||||| |||||   || ||||  |||||||||||||| ||||||||||||||||||| |||    
T  21250976 gagtttgaggatgtatacaaagaggtgtttgagtagtgtgaaagactaatatcccgatgctttacaagatgcaaaggtagaagttgagaatataaatgat 21251075  T
Q  542 gtgataattgtaggtggatgttgtaat 568  Q
    |||||||| ||| ||||||||||||||    
T  21251076 gtgataatggtaagtggatgttgtaat 21251102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 441 - 568
Target Start/End: Complemental strand, 21131052 - 21130924
Alignment:
Q  441 aggagtttgaggaagtaaacaaagaggtgtttgaaaattgtgaaaggctaatcatcc-aatgcat-acaagatgcaaagatagaagttgagaatataaac 538  Q
    ||||||||||||| ||| ||||||||||||||||  | |||||||| ||||| |||| ||| | | ||||||||||||| |||||||||||||||||||     
T  21131052 aggagtttgaggatgtatacaaagaggtgtttgagtagtgtgaaagactaat-atcctaatactttacaagatgcaaaggtagaagttgagaatataaat 21130954  T
Q  539 gatgtgataattgtaggtggatgttgtaat 568  Q
    ||||||||||| ||| ||||||||||||||    
T  21130953 gatgtgataatggtaagtggatgttgtaat 21130924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 21174437 - 21174349
Alignment:
Q  68 tatgcacatcaacaactgcatgcttctgcttcttttcacgaggatatggacaatgaaagcaagaaaattgctctgattttcaatatgga 156  Q
    |||||||| ||| | || |||||||||||||||| ||| ||| ||||||||| |||||| ||||||||||||||   ||||||||||||    
T  21174437 tatgcacaacaatagcttcatgcttctgcttcttctcatgagaatatggacagtgaaagaaagaaaattgctctcgctttcaatatgga 21174349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 21250659 - 21250745
Alignment:
Q  49 aacagcagtggctttgctttatgcacatcaacaactgcatgcttctgcttcttttcacgaggatatggacaatgaaagcaagaaaat 135  Q
    ||||||||||| |||| | |||||||| ||| || |||||| || |||||||| ||| ||  ||||||||| |||||||||||||||    
T  21250659 aacagcagtggatttgttgtatgcacaacaagaaatgcatgtttatgcttcttctcatgataatatggacattgaaagcaagaaaat 21250745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 442 - 563
Target Start/End: Original strand, 808205 - 808326
Alignment:
Q  442 ggagtttgaggaagtaaacaaagaggtgtttgaaaattgtgaaaggctaatcatccaatgcatacaagatgcaaagatagaagttgagaatataaacgat 541  Q
    |||||||||||| || |||||||||||||| ||||| |||||||| || |||||||||||  |||| ||||||||| ||||||| | | ||||||| |||    
T  808205 ggagtttgaggaggtgaacaaagaggtgttcgaaaagtgtgaaagccttatcatccaatgtttacatgatgcaaaggtagaagtcggggatataaatgat 808304  T
Q  542 gtgataattgtaggtggatgtt 563  Q
    |||||| |||| ||||||||||    
T  808305 gtgatacttgttggtggatgtt 808326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 129 - 301
Target Start/End: Original strand, 807886 - 808058
Alignment:
Q  129 agaaaattgctctgattttcaatatggacgcgggttattgtgatgttgctattattgcaacagaaaaaggaaaatgccaaataaaagcgttggcaggaag 228  Q
    ||||||||||||| |||||||||||||  || |||||||||||||||||| | | ||| || |     |||  ||  || |||||||| |||||||||||    
T  807886 agaaaattgctctcattttcaatatgggtgctggttattgtgatgttgctgtgactgctaccgctgggggagtatctcagataaaagccttggcaggaag 807985  T
Q  229 tgctattggtggagaagatttgcttggaaatatgatgtgtcatctctttcctgattatgaaaatatattcaag 301  Q
    | | || ||||||||||||||||||   ||||||||| | |||||||| || |||| ||||||||||||||||    
T  807986 taccatcggtggagaagatttgcttcagaatatgatgcgccatctcttaccagattctgaaaatatattcaag 808058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 443 - 563
Target Start/End: Original strand, 39241854 - 39241974
Alignment:
Q  443 gagtttgaggaagtaaacaaagaggtgtttgaaaattgtgaaaggctaatcatccaatgcatacaagatgcaaagatagaagttgagaatataaacgatg 542  Q
    |||||||||||||| |||||  ||||||||| ||| |||||||| || |||||||| ||  |||| ||||||||| || |||||||| || |||| ||||    
T  39241854 gagtttgaggaagtgaacaagcaggtgtttggaaaatgtgaaagccttatcatccagtgtttacatgatgcaaaggtaaaagttgaggatgtaaatgatg 39241953  T
Q  543 tgataattgtaggtggatgtt 563  Q
    |||||||||| | ||||||||    
T  39241954 tgataattgttgatggatgtt 39241974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 302
Target Start/End: Original strand, 39241534 - 39241707
Alignment:
Q  129 agaaaattgctctgattttcaatatggacgcgggttattgtgatgttgctattattgcaacagaaaaaggaaaatgccaaataaaagcgttggcaggaag 228  Q
    ||||| ||||||| |||||||||||||  || |||||||||||||||||| | | ||| || |    ||||  || | | ||||||||  ||||||||||    
T  39241534 agaaagttgctctcattttcaatatgggtgctggttattgtgatgttgctgtgactgctacggctggaggagtatccgagataaaagctgtggcaggaag 39241633  T
Q  229 tgctattggtggagaagatttgcttggaaatatgatgtgtcatctctttcctgattatgaaaatatattcaaga 302  Q
    | | || |||||||| || ||||||   |||||||||||||||||||| || |||| |||||| ||||||||||    
T  39241634 taccatcggtggagaggacttgcttcagaatatgatgtgtcatctcttaccagattctgaaaacatattcaaga 39241707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 39241416 - 39241497
Alignment:
Q  2 gcttgtgagatggccggtctaaaagttatcagactgatgcctgaaccaacagcagtggctttgctttatgcacatcaacaac 83  Q
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T  39241416 gcttgtgcgatggctggtcttcatgttcttaggctgatgcctgaaccaacagctgtggcattgttatatgcacagcaacaac 39241497  T

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