View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_80 (Length: 278)
Name: NF16378_high_80
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_80 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 27296759 - 27296570
Alignment:
| Q |
73 |
gcatttcctttatttttaggctaaacaaaacaactgtccggtaattaaatggaccagatatttaagggttattgctcgtacgaaatacgggttaaatagg |
172 |
Q |
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| T |
27296759 |
gcatttcctttatttttaggctaaacaaaacaactgtccggtaattaaatggaccagatatttaagggttattgctcgtacgaaatacgggttaaataag |
27296660 |
T |
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| Q |
173 |
cagatttatatatacaatttaaagatgtcaatttctatccacatgtaagaattctcgagaaggagaatgggagaacaatccctccaaatt |
262 |
Q |
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| T |
27296659 |
tagatttatatatacaatttagagatgtcaatttctatccacatgtaagaattctcgagaaggagaatgggagaacaatccctccaaatt |
27296570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 27297009 - 27296945
Alignment:
| Q |
25 |
attgatgaaaagtatatgaaatcaaataagtctacgtgaccttggttagcatttcctttattttt |
89 |
Q |
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| T |
27297009 |
attgatgaaaaatatatgaaatcaaataagtttacgtgaccttggttagcatttccttttttttt |
27296945 |
T |
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