View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_9 (Length: 578)
Name: NF16378_high_9
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 285 - 558
Target Start/End: Complemental strand, 42830467 - 42830194
Alignment:
| Q |
285 |
ctgtgatatttttccgctgtagaagccacagtatggataggaggaaagcagatacaaacctttccattatatggaatgctaagtgctgtgagtagaagag |
384 |
Q |
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| T |
42830467 |
ctgtgatacttttccactgtagaagccacagtatggataggaggaaagcagatacaaacctttccattatatggaatgctaagtgctgtgagtagaagag |
42830368 |
T |
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| Q |
385 |
agtatccagtgaaaactcctacttcaattgtctttttagcatttagaagtttcaagagcaaagccattagctgacccgcatcaggtgatgtgcccatgaa |
484 |
Q |
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| T |
42830367 |
agtatccagtgaaaactcctacttcaattgtctttttagcatttagaagtttcaagagcaaagccattagctgacccgcatcaggtgatgtgcccatgaa |
42830268 |
T |
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| Q |
485 |
gccactgaagaattacaataacattacataagaaaaagtttcctaatgctggctgaagaagtcaagttcaacaa |
558 |
Q |
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| T |
42830267 |
gccactgaagaattacaataacattacataagaaaaagtttcctaatgctggctgaagaagtcaagttcaacaa |
42830194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 18221174 - 18220918
Alignment:
| Q |
20 |
gccaacgccaacaagttcggttcttggggcgtcatgaggagcaaaaggttgaacctttacctccacttcagaaaaggaaaaacctttcccttttaaggcc |
119 |
Q |
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| T |
18221174 |
gccaacgccggcaagttcggttcttgggccgtcatgaggagcaaaaggttgaacctttacctgtgattcagaa--ggaaaaaggtgtcatttttaaggcc |
18221077 |
T |
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| Q |
120 |
agagaagggactaatgtgaagaagagaaagaaca------------aaatggaagaagctgtcaaggtagctcagtttgaggtacagaggacaactcgtc |
207 |
Q |
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| T |
18221076 |
agagtagggactattgtgaagaagagaaagaacattgaaaaagaagaaatggaagaagttgtgaaggtagctccttttgaggtacagagggtgactcgtc |
18220977 |
T |
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| Q |
208 |
aatgcaacaaaaatcaacaaggtgtgagtagtagcagcggagccaaaaaatctaagaaa |
266 |
Q |
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| T |
18220976 |
aatgcaacaaaaatcaacaaggtgtaagtagtagcagcgtggccaaaaagtctaagaaa |
18220918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 339 - 485
Target Start/End: Original strand, 7589067 - 7589213
Alignment:
| Q |
339 |
caaacctttccattatatggaatgctaagtgctgtgagtagaagagagtatccagtgaaaactcctacttcaattgtctttttagcatttagaagtttca |
438 |
Q |
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| T |
7589067 |
caaacctttccatcatcaggaatgttaagtgctgtgagtagaagagagtatccagtgaaaactccaatttcaattgtctttttagcattcaacagcttca |
7589166 |
T |
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| Q |
439 |
agagcaaagccattagctgacccgcatcagg-tgatgtgcccatgaag |
485 |
Q |
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| T |
7589167 |
agagtatgcccattaacttacccgcatcaggatga-gtgcccatgaag |
7589213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 43012889 - 43012637
Alignment:
| Q |
20 |
gccaacgccaacaagttcggttcttggggcgtcatgaggagcaaaaggttgaacctttacctccacttcagaaaaggaaaaacctttcccttttaaggcc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
43012889 |
gccaacgccaacaagttcggttcttggggcgtcatgaggagcaaaaggttgaacctttacctccacttcagaa--ggaaaaacctttccattttaaggcc |
43012792 |
T |
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| Q |
120 |
agagaagggactaatgtgaagaagagaaagaacaaaatggaagaagctgtcaaggtagctcagtttgaggtacagaggacaactcgtcaatgcaacaaaa |
219 |
Q |
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| T |
43012791 |
agagatgggactaatgtgaagaagagaaagaacaaaatggaagaagctgtcaaggtagctcagtttgaggtacagaggacaactcgtcaatgcaacaaaa |
43012692 |
T |
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| Q |
220 |
atcaacaaggtgtgagtagtagcagcggagccaaaaaatctaagaaagcagtgaa |
274 |
Q |
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| T |
43012691 |
atcaacaaggtgtgagtagtagcagcggagccaaaaaatctaagaaagcagtgaa |
43012637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 339 - 421
Target Start/End: Original strand, 34531799 - 34531881
Alignment:
| Q |
339 |
caaacctttccattatatggaatgctaagtgctgtgagtagaagagagtatccagtgaaaactcctacttcaattgtcttttt |
421 |
Q |
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||||||||||||| | |||||| | ||||| ||||| ||||||||||||||||| || ||||| ||||||||||||||||| |
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| T |
34531799 |
caaacctttccatcgtcgggaatgttgagtgcagtgaggagaagagagtatccagtaaacactccaacttcaattgtcttttt |
34531881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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