View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16378_high_94 (Length: 248)
Name: NF16378_high_94
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_94 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 72 - 248
Target Start/End: Original strand, 1454060 - 1454236
Alignment:
| Q |
72 |
ggatcattataacattgatgagccgcaaaataatctgcacatcaaatctttattgagatataaataaaattcgaaactacacataaatattgtagactat |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1454060 |
ggatcattataacattgatgagccgcaaaataatctgcacatcaaatctttattgagatataaataaaattcgaaactacacataaatattgtagactat |
1454159 |
T |
|
| Q |
172 |
gcttttaatagtgtaaagtatggaaatgacacagataattgctatgaatctctgaattccttttgagaatacaacat |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1454160 |
gcttttaatagtgtaaagtatggaaatgacacagataattgctatgaatctctgaattccttttgagaatacaacat |
1454236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 245
Target Start/End: Original strand, 1455583 - 1455751
Alignment:
| Q |
72 |
ggatcattataacattgatgagccgcaaaataatctgcacatcaaatctttattgagatataaataaaattcgaaactacacataaatattgtagactat |
171 |
Q |
| |
|
||||||| |||||||||||||||| |||||| | |||| |||||||||||||||||| |||||||||| |||||||||||||| || ||| |||| |
|
|
| T |
1455583 |
ggatcataataacattgatgagccacaaaat---ccacacaccaaatctttattgagata--aataaaattccaaactacacataaacataataggctat |
1455677 |
T |
|
| Q |
172 |
gcttttaatagtgtaaagtatggaaatgacacagataattgctatgaatctctgaattccttttgagaatacaa |
245 |
Q |
| |
|
||||||||||||||||| ||| || | || |||||||| || ||||||| | || ||||||||||||||||||| |
|
|
| T |
1455678 |
gcttttaatagtgtaaactattgataagaaacagataactgatatgaatttttgtattccttttgagaatacaa |
1455751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 245
Target Start/End: Complemental strand, 1567728 - 1567594
Alignment:
| Q |
109 |
cacatcaaatctttattgagatataaataaaattcgaaactacacataaatattgtagactatgcttttaatagtgtaaagtatggaaatgacacagata |
208 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| |||||||||||||| || ||| ||||||||||||||||||||| ||| || | || ||||||| |
|
|
| T |
1567728 |
cacaccaaatctttattgagata--aataaaattccaaactacacataaacataataggctatgcttttaatagtgtaaactattgataagaaacagata |
1567631 |
T |
|
| Q |
209 |
attgctatgaatctctgaattccttttgagaatacaa |
245 |
Q |
| |
|
| || ||||||| | || ||||||||||||||||||| |
|
|
| T |
1567630 |
actgatatgaatttttgtattccttttgagaatacaa |
1567594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 245
Target Start/End: Complemental strand, 1556230 - 1556102
Alignment:
| Q |
115 |
aaatctttattgagatataaataaaattcgaaactacacataaatattgtagactatgcttttaatagtgtaaagtatggaaatgacacagataattgct |
214 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||| || | || |||||||| || | |
|
|
| T |
1556230 |
aaatctttattgagata--aataaaattccaaactacacataaacatagtagactatgcttttaatagtgtaaactattgataagaaacagataactgat |
1556133 |
T |
|
| Q |
215 |
atgaatctctgaattccttttgagaatacaa |
245 |
Q |
| |
|
| |||| | || ||||| ||||||||||||| |
|
|
| T |
1556132 |
acgaatttttgtattccctttgagaatacaa |
1556102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 245
Target Start/End: Original strand, 1460692 - 1460860
Alignment:
| Q |
73 |
gatcattataacattgatgagccgcaaaataatctgcacatcaaa-tctttattgagatataaataaaattcgaaactacacataaatattgtagactat |
171 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | || | |||| |||||||||||||| |||||||||| ||||||| |||||| || ||||||||| |
|
|
| T |
1460692 |
gatcataataacattgatgagccgcaaaat---ccacataccaaaatctttattgagata--aataaaattccaaactacccataaacatagtagactat |
1460786 |
T |
|
| Q |
172 |
gcttttaatagtgtaaagtatggaaatgacacagataattgctatgaatctctgaattccttttgagaatacaa |
245 |
Q |
| |
|
||||||||||||||||| ||| || | || |||||||| || || |||| | || ||||| ||||||||||||| |
|
|
| T |
1460787 |
gcttttaatagtgtaaactattgataagaaacagataactgatacgaatttttgtattccctttgagaatacaa |
1460860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University