View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_high_95 (Length: 247)

Name: NF16378_high_95
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_high_95
NF16378_high_95
[»] chr2 (2 HSPs)
chr2 (20-230)||(45200040-45200249)
chr2 (145-225)||(21983195-21983275)
[»] chr6 (1 HSPs)
chr6 (143-225)||(3151607-3151689)
[»] chr1 (2 HSPs)
chr1 (151-225)||(1499297-1499371)
chr1 (152-219)||(1459378-1459445)
[»] chr8 (2 HSPs)
chr8 (149-219)||(975606-975676)
chr8 (152-230)||(26787237-26787315)
[»] chr4 (2 HSPs)
chr4 (146-224)||(44529655-44529733)
chr4 (145-230)||(48439763-48439848)
[»] chr3 (1 HSPs)
chr3 (152-228)||(50273355-50273431)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 45200040 - 45200249
Alignment:
Q  20 atcctgccaatctggtggttccccctgtatgttacaagtgacgagacagtaaaaaacaagcnnnnnnnncataagcaaatcaaatataacaatagccatg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||    
T  45200040 atcctgccaatctggtggttccccctgtatgttacaagtgacgagacagtaaaaaacaagcaaaaaaa-cataagcaaatcaaatataacaatagccatg 45200138  T
Q  120 taatagcctaatcatatgaagaacgtacccctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45200139 taatagcctaatcatatgaagaacgtacccctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaa 45200238  T
Q  220 gcccaagaatt 230  Q
    |||||||||||    
T  45200239 gcccaagaatt 45200249  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 21983195 - 21983275
Alignment:
Q  145 tacccctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaa 225  Q
    |||||||||||| |||||| |||| |||||||| ||||| || |||||||||||||| |  |||||||||||||| |||||    
T  21983195 tacccctccattggccaatacaatggccatgattgcagctgcctccatgacccatgataatggattccacataaaacccaa 21983275  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 225
Target Start/End: Complemental strand, 3151689 - 3151607
Alignment:
Q  143 cgtacccctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaa 225  Q
    ||||| |||||||| ||||| |||||||||||||| || ||||||||||| |||||||| || |||||||||||||| |||||    
T  3151689 cgtactcctccattggccaaagcaatagccatgattgctgcagcttccatcacccatgaaagaggattccacataaatcccaa 3151607  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 1499297 - 1499371
Alignment:
Q  151 tccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaa 225  Q
    |||||| ||||| ||||| ||||||||||||||||||||||| |||||||| |  |||||||||||||| |||||    
T  1499297 tccattagccaaagcaatggccatgatagcagcagcttccataacccatgataaaggattccacataaaacccaa 1499371  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 1459445 - 1459378
Alignment:
Q  152 ccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaa 219  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| |  || |||||||||||    
T  1459445 ccattagccaaagcaatggccataatagcagcagcttccataacccatgacaaagggttccacataaa 1459378  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 975606 - 975676
Alignment:
Q  149 cctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaa 219  Q
    ||||||| |||||  ||||| ||||||||||||||||||||||| |||||||| |  ||||||||||||||    
T  975606 cctccatgtgccatagcaatggccatgatagcagcagcttccataacccatgacaaaggattccacataaa 975676  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 230
Target Start/End: Complemental strand, 26787315 - 26787237
Alignment:
Q  152 ccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaagaatt 230  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| |  || ||||||||||| ||||| ||||    
T  26787315 ccattagccaaagcaatggccataatagcagcagcttccataacccatgataaagggttccacataaaacccaaaaatt 26787237  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 44529733 - 44529655
Alignment:
Q  146 acccctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagccca 224  Q
    |||||||||||||| | |||||||||||| |||||||| || ||||| ||||| || || |||||||||||||| ||||    
T  44529733 acccctccatttgcaagtgcaatagccattatagcagctgcctccataacccaagaaagaggattccacataaatccca 44529655  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 48439763 - 48439848
Alignment:
Q  145 tacccctccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaagaatt 230  Q
    ||||||||||||||||||| |||| ||||| |  |||||| | ||||| |||||||| || ||||||||||| || ||||||||||    
T  48439763 tacccctccatttgccaatccaatggccataagggcagcaacctccataacccatgatagtggattccacatgaaacccaagaatt 48439848  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 50273431 - 50273355
Alignment:
Q  152 ccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaagaa 228  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| |  |||||||||||||| || |||||    
T  50273431 ccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaagaa 50273355  T

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