View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_high_98 (Length: 241)
Name: NF16378_high_98
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_high_98 |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 9984235 - 9984436
Alignment:
| Q |
21 |
taggaagaaatggagttcatgaatcagtggaaaatatatatgttcgaaattgcactttcaatgggacaacaaatggagccagaatcaagacatggatagt |
120 |
Q |
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| T |
9984235 |
taggaagaaatggagttcatgaatcagtggaaaatatatatgttcgaaattgcactttcaataggacaacaaatggagccagaatcaagacatggatagt |
9984334 |
T |
|
| Q |
121 |
aagatatacttctactctatttaatttgctannnnnnnnnnnnnnnnngaagaaattaatttagttcacccaaattggtttgacatttactagcacatga |
220 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9984335 |
aagatatacttctactctatttaatttggta--tttttttattttcttgaagaaattaatttagttcacccaaattggtttgacatttactagcacctga |
9984432 |
T |
|
| Q |
221 |
aaat |
224 |
Q |
| |
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|||| |
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| T |
9984433 |
aaat |
9984436 |
T |
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