View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16378_low_1 (Length: 2401)
Name: NF16378_low_1
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_1 |
 | |
|
| [»] scaffold0363 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 2309; Significance: 0; HSPs: 25)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 2309; E-Value: 0
Query Start/End: Original strand, 18 - 2363
Target Start/End: Original strand, 6306823 - 6309168
Alignment:
| Q |
18 |
tgtttgagtaagagtcagaggcatatagcagtaaagatattatcacaaggcatcatcagatcctattttacagcacttgatatgtttttcatctcttaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6306823 |
tgtttgagtaagagtcagaggcatatagcagtaaagatattatcagaaggcatcatcagatcctattttacagcacttgatatgtttttcatctcttaat |
6306922 |
T |
|
| Q |
118 |
catttgagagtgaaatatcatttatggactaatctttgaaccagcaggcaggatttcggaagcaagtatttgaggcttttgtgagcaattgtttggtgcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6306923 |
catttgagagtgaaatatcatttatggactaatctttgaaccagcaggcaggatttcggaagcaagtatttgaggcttttgtgagcaattgtttggtgcc |
6307022 |
T |
|
| Q |
218 |
taaagtgtaaccttcgaatatcactccttccacannnnnnnctccttttcagctgttgcttttgccttctgtcgaaccaagcaaagtgttcatgtgctct |
317 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6307023 |
taaagagtaaccttcgaatatcactccttccacatttttttctccttttcagctgttgcttttgccttctgtcgaaccaagcaaagtgttcatgtgctct |
6307122 |
T |
|
| Q |
318 |
ccaccaaatccaatatgcataagctcttcaagtaaagacctactcataaaccaaattattttgcagtaccataaaatggaacagagtcaataaactaaat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6307123 |
ccaccaaatccaatatgcataagctcttcaagtaaagacctactcataaaccaaattattttgcagtaccataaaatggaacagagtcaataaactaaat |
6307222 |
T |
|
| Q |
418 |
ttattccctaagttatcggtataatgagtgcgaggaagattatgtacctcatatcatatgtttcatctaattcgaagtttgatggcagagttccaaagat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6307223 |
ttattccctaagttatcggtataatgagtgcgaggaagattatgtacctcatatcatatgtttcatctaattcgaagtttgatggcagagttccaaagat |
6307322 |
T |
|
| Q |
518 |
gtctagctttaatttgtttgatggaggaattgtttcttctagatcatctgattcaaaatttgttggaggaattgtttcttctcgatgattggattgaaaa |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6307323 |
gtctagctttaatttgtttgatggaggaattgtttcttctagatcatctgattcaaaatttgttggaggaattgtttcttctcgatgattggattgaaaa |
6307422 |
T |
|
| Q |
618 |
tttgatgaagatgcagatgcagtttcttcttgatcatgagattcaaaaattgttgaaggaatagtttcttccttatatatccagtgaaatccacactctt |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6307423 |
tttgatgaagatgcagatgcagtttcttcttgatcatgagattcaaaaattgttgaaggaatagtttcttccttatatatccagtgaaatccacactctt |
6307522 |
T |
|
| Q |
718 |
ttatcgatacttcatcatatagatcttcttcaataaagaatctaaatgtaagctttggattgcaactagtgctgttcacatcattaatggattttatttc |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6307523 |
ttatcgatacttcatcatatagatcttcttcaataaagaatctaaatgtaagctttggattgcaactagtgctgttcacatcattaatggattttatttc |
6307622 |
T |
|
| Q |
818 |
ttcaactgctgccattatctgcttgcaacttgcttgatcataccaagaaaccaaatgatccgatatcatgtggattgatggatcgaaacgcaataaccaa |
917 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6307623 |
ttcaactgctgccattatctgcttgcaacttgcttgatcataccaagaaaccaaatgatccgatatcatgtggattgatggatcgaaacgcaataaccaa |
6307722 |
T |
|
| Q |
918 |
ctgaagaaatttgctcttgtgaaacttgttatatagattctttcacctgaactattgtccaaatagcactcacatccaaaatctacatcatatcccatat |
1017 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6307723 |
ctgaagaaatttgctcttgtgaaacttgttatatagattctttcacctgaactattgtccaaatagcactcacatccaaaatccacatcatatcccatat |
6307822 |
T |
|
| Q |
1018 |
ggccttgagaaagaaccaagtagtacgaaaatccctgtaaattagacggaagctcaagagtgacacaaacttgtgtagaagagtaatggaaccaattttc |
1117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6307823 |
ggccttgagaaagaaccaagtagtacgaaaatccctgtaaattagacggaagctcaagagtgacacaaacttgtgtagaagagtaatggaaccaattttc |
6307922 |
T |
|
| Q |
1118 |
catgccaggcatagcaggtaaaaagtaccaaataatttcatcatcatcatataaagatggtccagtttcaattctatccatagcatctttcaaaactgtt |
1217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6307923 |
catgccaggcatagcaggtaaaaagtaccaaataatttcatcatcatcatataaagatggtccagtttcaattctatccatagcatctttcaaaactgtt |
6308022 |
T |
|
| Q |
1218 |
tggtatgaatgtggttccaaatttttgcagttaaggagataaataaaacaaggattgggttcctcatatggttcaatcgttgaactcaacactttctcaa |
1317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6308023 |
tggtatgaatgtggttccaaatttttgcagttaaggagataaataaaacaaggattgggttcctcatatggttcaatcgttgaactcaacactttctcaa |
6308122 |
T |
|
| Q |
1318 |
gagattcacaattcgagacaaccaaaactggaatgaactgtgaaagtgccggaatagattgaatcattttacaattgtaaacatcaacacgttcaagtcg |
1417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6308123 |
gagattcacaattcgagacaaccaaaactggaatgaactgtgaaagtgccggaatagattgaatcattttacaatcgtaaacatcaacacgttcaagtcg |
6308222 |
T |
|
| Q |
1418 |
gggaagatacttaatggtttcaggcaagcttctaatgtccataccatccagtgttaaagactttaacgacgatagtaaggagatactatctgggaattca |
1517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6308223 |
gggaagatacttaatggtttcaggcaagcttctaatgtccataccatccagtgttaaagactttaacgacgatagtaaggagatactatctgggaattca |
6308322 |
T |
|
| Q |
1518 |
gacaatataggaatataaataaaggttaattcttttacactctggaaggcaggactagaaaataatttatctaaggtgataaaagggtcatcttcacgat |
1617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6308323 |
gacaatataggaatataaataaaggttaattcttttacactctggaaggcaggactagaaaataatttatctaaggtgataaaagggtcatcttcacgat |
6308422 |
T |
|
| Q |
1618 |
tctgtggactcgaaagcgaaatatgatcggcaaagttttctggaagatccacaagacaatcactgattggaaagacaaaccgtttaaggttttgtttatg |
1717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6308423 |
tctgtggactcgaaagcgaaatatgatcggcaaagttttctggaagatccacaagacaatcactgattggaaagacaaaccgtttaaggttttgtttatg |
6308522 |
T |
|
| Q |
1718 |
caatattgacgatggaagttcattccgatcccactctgataaacacaaatccaaaccatcaacggatgaaaatgtgactgagaactctttgagattgatg |
1817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6308523 |
caatattgacgatggaagttcattccgatcccactctgataaacacaaatccaaaccatcaacggatgaaaatgtgactgagaactctttgagattgatg |
6308622 |
T |
|
| Q |
1818 |
caatccctagcttccaatttccggagcgctggtgaacaagtgttactcgaaaggctcttaagcgatgtacactcgaatacatttaaaacttcaagctttt |
1917 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6308623 |
caatccctagcttccaatttccggagcgctggtgaacaagtgttactcgaaaggctcttaagcgatgtacactcgaatacatttaaaacttcaagctttt |
6308722 |
T |
|
| Q |
1918 |
ggagaaggaaaattgatgaatcaacttcaggcatgctttcacaataacgaagtattacatgttttagatttggggaacccgacacatttggacactctat |
2017 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6308723 |
ggagaaggaaaattgatgaatcaacttcaggcatgctttcacaataacgaagtattacatgttttagatttggggaacccgacacatttggacactctat |
6308822 |
T |
|
| Q |
2018 |
cagctttttggagccaccgaggtcaagtatctctaaatttggcaaatcctataacaatatacaattggtcaaacaagttagtgcattttcttaaattcta |
2117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6308823 |
cagctttttggagccaccgaggtcaagtatctctaaatttggcaaatcctataacaatatacaattggtcaaacaagttagtgcattttcttaaattcta |
6308922 |
T |
|
| Q |
2118 |
tagatttcacaaccaagaagggggaataagtataaaggctcacatgcattttttgttttcctattttgataaaaccacaattttggtcagccatttctaa |
2217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6308923 |
tagatttcacaaccaagaagggggaataagtataaaggctcacatgcattttttgttttcctattttgataaaaccacaattttggtcagccatttctaa |
6309022 |
T |
|
| Q |
2218 |
ttatgcaattttgatcacctattttctaattacgcaattttggtccctaatttttagaaattgggagtatatatgtaaaagagtcttgctaatgaatgct |
2317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6309023 |
ttatgcaattttgatcacctattttctaattacgcaattttggtccctaatttttagaaattgggagtatatatgtaaaagagtcttgctaatgaatgct |
6309122 |
T |
|
| Q |
2318 |
caccatcattttccattataaaatacttaaaacttttaacaaaacc |
2363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6309123 |
caccatcattttccattataaaatacttaaaacttttaacaaaacc |
6309168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 283 - 1143
Target Start/End: Complemental strand, 13168480 - 13167626
Alignment:
| Q |
283 |
cttctgtcgaaccaagcaaagtgttcatgtgctctccaccaaatccaatatgcataagctcttcaagtaaagacctactcataaaccaaattattttgca |
382 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||||| ||||||||||||||| ||||||||||| || | || ||||||||| ||||||| |||| |
|
|
| T |
13168480 |
cttctgtggaaccaaacaaagtgttcatgtgatctccaaaaaatccaatatgcatgagctcttcaagcgaacatctgctcataaacagaattattatgca |
13168381 |
T |
|
| Q |
383 |
gtaccataaaatggaacagagtcaataaactaaatttattccctaagttatcggtataatgagtgcgaggaagattatgtacctcatatcatatgtttca |
482 |
Q |
| |
|
||| |||||||| || ||||| | ||||||||| |||||||| |||||||| ||||||||| ||| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
13168380 |
gtaacataaaattgagcagagcctgtaaactaaacttattccccaagttatcagtataatgactgctaggaagattatgtacctcaaatcacatgtttcg |
13168281 |
T |
|
| Q |
483 |
tctaattcgaagtttgatggcagagttccaaagatgtctagctttaatttgtttgatggaggaattgtttcttctagatcatctgattcaaaatttgttg |
582 |
Q |
| |
|
|||||||| | |||||||||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13168280 |
tctaattctagatttgatggcagagttccaaacatgcctagctttaatttgtttcttgaaggaattgtttcttctagatcatctgattcaaaattttctg |
13168181 |
T |
|
| Q |
583 |
gaggaattgtttcttctcgatgattggattgaaaatttgatgaagatgcagatgcagtttcttcttgatcatgagattcaaaaattgttgaaggaatagt |
682 |
Q |
| |
|
|||||| | || ||||| ||| |||||||||||||| |||||||| |||| ||||||||| |||||| |||||| |||||||| |||||| || |
|
|
| T |
13168180 |
gaggaactattacttcttgatcattggattgaaaatccgatgaaga------tgcaatttcttcttcatcatgggattcagaaattgttaaaggaactgt |
13168087 |
T |
|
| Q |
683 |
ttcttccttatatatccagtgaaatccacactcttttatcgatacttcatcatatagatcttcttcaataaagaatctaaatgtaagctttggattgcaa |
782 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||| ||||||||| |||| || ||| | ||||||||||||||||||||||||||||||| || |
|
|
| T |
13168086 |
ttcttccttatacatccagtgaaacccacactcttttatcactacttcatcgtatatattttcatgaataaagaatctaaatgtaagctttggattgtaa |
13167987 |
T |
|
| Q |
783 |
ctagtgctgttcacatcattaatggattttatttcttcaactgctgccattatctgcttgcaacttgcttgatcataccaagaaaccaaatgatccgata |
882 |
Q |
| |
|
|||||| |||||||||||||| || |||||||||||||| |||| ||||||| |||||||||||| || |||||||||| |||| ||||||||||| | |
|
|
| T |
13167986 |
ctagtgttgttcacatcattatcggcttttatttcttcaaatgcttccattatttgcttgcaacttcctccatcataccaaaaaactaaatgatccgaca |
13167887 |
T |
|
| Q |
883 |
tcatgtggattgatggatcgaaacgcaataaccaactgaagaaatttgctcttgtgaaacttgttatatagattctttcacctgaactattgtccaaata |
982 |
Q |
| |
|
||||||||||| ||||||||||||| |||| ||| | |||| | | | ||||||||||||||||||||| | ||||||| ||| |||||||||| | |
|
|
| T |
13167886 |
tcatgtggattaatggatcgaaacgacgtaacaaacctatgaaactggtttttgtgaaacttgttatatagactttttcaccagaattattgtccaagaa |
13167787 |
T |
|
| Q |
983 |
gcactcacatccaaaatctacatcatatcccatatggccttgagaaagaaccaagtagtacgaaaatccctgtaaattagacggaagctcaagagtgaca |
1082 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | ||| ||| |||||||| |||||||||||||||||| |
|
|
| T |
13167786 |
gcactcacatccaaaatctacaccatatcccatacggccttgagaaagaaccaagtagtaggcaaaacccgacaaattagaaggaagctcaagagtgaca |
13167687 |
T |
|
| Q |
1083 |
caaacttgtgtagaagagtaatggaaccaattttccatgccaggcatagcaggtaaaaagt |
1143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13167686 |
gaaacttgtgtagaagagtaatggaaccaattttccatgccaggcatagcaggtaagaagt |
13167626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 1184 - 2114
Target Start/End: Complemental strand, 14407105 - 14406176
Alignment:
| Q |
1184 |
ttcaattctatccatagcatctttcaaaactgtttggtatgaatgtggttccaaatttttgcagttaaggagataaataaaacaaggattgggttcctca |
1283 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||||||||| || ||||| ||| |
|
|
| T |
14407105 |
ttcaatcccatccatagcatctttcaaaactgtttggtatgaatgtgaatccatgtttttgcagttaaggagcgagataaaacaaacgttaggttcatca |
14407006 |
T |
|
| Q |
1284 |
tatggttcaatcgttgaactcaacactttctcaagagattcacaattcgagacaaccaaaactggaatgaactgtgaaagtgccggaatagattgaatca |
1383 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||| || |
|
|
| T |
14407005 |
tatggttcacgcgttgaactcaacacttcctcaagagattcacaattccagacaaccaaaatttgaatgaactgtgaaagtgccggaatagattgaagca |
14406906 |
T |
|
| Q |
1384 |
ttttacaattgtaaacatcaacacgttcaagtcggggaagatacttaatggtttcaggcaagcttctaatgtccataccatccagtgttaaagactttaa |
1483 |
Q |
| |
|
|||||||| | || |||||| || ||| ||||||||||||||| ||||||||| |||||| ||||| ||||| || ||| ||||| || ||| |
|
|
| T |
14406905 |
atttacaatcatgaatatcaacgaatttgagttggggaagatacttaacggtttcaggtaagcttttaatggccatatcaaatagtattaaactctctaa |
14406806 |
T |
|
| Q |
1484 |
cgacgatagtaaggagatactatctgggaattcagacaatataggaatataaataaaggttaattcttttacactctggaaggcaggactagaaaataat |
1583 |
Q |
| |
|
||||| ||||||||||| || ||||||| ||||||||| |||||||||| || |||| || | |||||||||||||||| ||||||||| ||| | | |
|
|
| T |
14406805 |
tgacgacagtaaggagatgctgtctgggatttcagacaacataggaatatcaacaaagaccaagttttttacactctggaagccaggactagtaaacatt |
14406706 |
T |
|
| Q |
1584 |
ttatctaaggtgataaaagggtcatcttcacgattctgtggactcgaaagcgaaatatgatcggcaaagttttctggaagatccacaagacaatcactga |
1683 |
Q |
| |
|
||||| |||||||| |||||||| | || || |||| || | || ||| ||||| |||| |||||||||| | ||||| ||||||||||||||||| |
|
|
| T |
14406705 |
ttatccaaggtgatgaaagggtcttgttgacaattccgttgtttcacaagacaaatacgatctacaaagttttcagtaagattcacaagacaatcactga |
14406606 |
T |
|
| Q |
1684 |
ttggaaagacaaaccgtttaaggttttgtttatgcaatattgacgatggaagttcattccgatcccactctgataaacacaaatccaaaccatcaacgga |
1783 |
Q |
| |
|
||||||||| ||| | ||| |||| | |||||||| ||| |||||||||||||||| |||||| ||| ||||| |||| | |||||||||| | | |
|
|
| T |
14406605 |
ttggaaagaaaaagtttccaagattttttgcatgcaataatgatgatggaagttcattcccatcccatcctgttaaactcaaacctaaaccatcaaggta |
14406506 |
T |
|
| Q |
1784 |
tgaaaatgtgactgagaactctttgagattgatgcaatccctagcttccaatttccggagcgctggtgaacaagtgttactcgaaaggctcttaagcgat |
1883 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||| | || ||||| ||||| |||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
14406505 |
atcaaatgggactgagagatctttgagattgaagcaattaatcgcactcaattgacggagggctggtgaacaagtgttactggaaatgctcttaagcgac |
14406406 |
T |
|
| Q |
1884 |
gtacactcgaatacatttaaaacttcaagcttttggagaaggaaaattgatgaatcaacttcaggcatgctttcacaataacgaagtattacatgtttta |
1983 |
Q |
| |
|
|||||| | | || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | | ||||| ||||| ||||| |
|
|
| T |
14406405 |
gtacacccagacacgtttaaaacttcaagcttttggagatggaaaattgatgaatcaacttcaggcatgctttcacattcatcaagtagtacatatttta |
14406306 |
T |
|
| Q |
1984 |
gatttggggaacccgacacatttggacactctatcagctttttggagccaccgaggtcaagtatctctaaatttggcaaatcctataacaatatacaatt |
2083 |
Q |
| |
|
|||| || ||||| ||||||||||||||||||||||| ||| |||| |||| ||||||| | |||||||||| |||| || || |||||| |||||||| |
|
|
| T |
14406305 |
gattcggagaaccagacacatttggacactctatcagttttgtggaaccactcaggtcaattttctctaaattgggcacattctgtaacaaaatacaatt |
14406206 |
T |
|
| Q |
2084 |
ggtcaaacaagttagtgcattttcttaaatt |
2114 |
Q |
| |
|
||| | || ||||| |||||||||||||| |
|
|
| T |
14406205 |
catcaga-aaattagtacattttcttaaatt |
14406176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1360 - 2114
Target Start/End: Complemental strand, 5647745 - 5646991
Alignment:
| Q |
1360 |
aaagtgccggaatagattgaatcattttacaattgtaaacatcaacacgttcaagtcggggaagatacttaatggtttcaggcaagcttctaatgtccat |
1459 |
Q |
| |
|
|||| |||||||||||||||| || | |||||| ||||||| |||| ||| |||||||||||||||||||||||||| ||||||||| ||||| |||| |
|
|
| T |
5647745 |
aaagcgccggaatagattgaagcaatctacaatcgtaaacacggacacattccagtcggggaagatacttaatggtttcgggcaagcttttaatggccat |
5647646 |
T |
|
| Q |
1460 |
accatccagtgttaaagactttaacgacgatagtaaggagatactatctgggaattcagacaatataggaatataaataaaggttaattcttttacactc |
1559 |
Q |
| |
|
| | || ||||| ||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| | | ||||||||| ||||||||||| |
|
|
| T |
5647645 |
atgaattagatttaaatactttaatgacgatagtaaggagatactgtctgggaattcagacaagataggaatcttacaaaaggttaagacttttacactc |
5647546 |
T |
|
| Q |
1560 |
tggaaggcaggactagaaaataatttatctaaggtgataaaagggtcatcttcacgattctgtggactcgaaagcgaaatatgatcggcaaagttttctg |
1659 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||| | |||| ||||| || |||| |||| |||||| ||| ||||||||| | |
|
|
| T |
5647545 |
atgaaggcaggactagaaagtaatttatctaaggtgatgaaagggtcctgttcaggattccgttgactaccaagccaaatattatcacaaaagttttcag |
5647446 |
T |
|
| Q |
1660 |
gaagatccacaagacaatcactgattggaaagacaaaccgtttaaggttttgtttatgcaatattgacgatggaagttcattccgatcccactctgataa |
1759 |
Q |
| |
|
|||| ||||| ||||||||||| || |||||| ||||| ||||| |||||| ||||||||||||| |||||||||||||||| || ||||| |||||| |
|
|
| T |
5647445 |
gaaggtccacgagacaatcactaataggaaaggcaaactttttaatattttgtgtatgcaatattgatgatggaagttcattcccattccactttgataa |
5647346 |
T |
|
| Q |
1760 |
acacaaatccaaaccatcaacggatgaaaatgtgactgagaactctttgagattgatgcaatccctagcttccaatttccggagcgctggtgaacaagtg |
1859 |
Q |
| |
|
| |||||| |||||||||||| || | ||||| ||||||||||||||||||||||| ||||| | |||| | |||| |||| ||||||||||||||| |
|
|
| T |
5647345 |
atacaaatgcaaaccatcaactgaagcaaatgggactgagaactctttgagattgaagcaattcatagcattcaatacatggagggctggtgaacaagtg |
5647246 |
T |
|
| Q |
1860 |
ttactcgaaaggctcttaagcgatgtacactcgaatacatttaaaacttcaagcttttggagaaggaaaattgatgaatcaacttcaggcatgctttcac |
1959 |
Q |
| |
|
||||| |||||||||||||| ||||||| | ||| ||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5647245 |
ttactgaaaaggctcttaagcaatgtacatccagccacacataatgtttcaagcttttggagatggaaaattgatgaatcaacttcaggcaagctttcac |
5647146 |
T |
|
| Q |
1960 |
aataacgaagtattacatgttttagatttggggaacccgacacatttggacactctatcagctttttggagccaccgaggtcaagtatctctaaatttgg |
2059 |
Q |
| |
|
|| | |||| |||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||| | | |||||||| | | |||| || || |
|
|
| T |
5647145 |
aacgattaagtgttacatgtttaagattcggggaaccagacacatttggacactcaatcagctttttggagtctctgaggtcaattgttgctaatttggg |
5647046 |
T |
|
| Q |
2060 |
caaatcctataacaatatacaattggtcaaacaagttagtgcattttcttaaatt |
2114 |
Q |
| |
|
||||| || ||||||||||||||||| ||| |||||||| |||||||||||||| |
|
|
| T |
5647045 |
caaattctgcaacaatatacaattggtaaaaaaagttagtacattttcttaaatt |
5646991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1184 - 2124
Target Start/End: Complemental strand, 13167573 - 13166639
Alignment:
| Q |
1184 |
ttcaattctatccatagcatctttcaaaactgtttggtatgaatgtggttccaaatttttgcagttaaggagataaataaaacaaggattgggttcctca |
1283 |
Q |
| |
|
|||||| || ||||||||||| || ||||||||||||||||||||||| ||||| ||| ||||||||||||| | ||||| | | |||| |||| |
|
|
| T |
13167573 |
ttcaatcctttccatagcatcgtttaaaactgtttggtatgaatgtggatccaattttatgcagttaaggagc---agaaaaccacacctaggtttctca |
13167477 |
T |
|
| Q |
1284 |
tatggttcaatcgttgaactcaacactttctcaagagattcacaattcgagacaaccaaaactggaatgaactgtgaaagtgccggaatagattgaatca |
1383 |
Q |
| |
|
||||||| || ||||||||||||||||||| |||||||||||| | | | |||| || | || |||||| | ||||||||||||| || |
|
|
| T |
13167476 |
gctggttcactca---aactcaacactttctcaagcgattcacaattccataacataaaaaaacaaacgtgctttgaaagcggtggaatagattgaagca |
13167380 |
T |
|
| Q |
1384 |
ttttacaattgtaaacatcaacacgttcaagtcggggaagatacttaatggtttcaggcaagcttctaatgtccataccatccagtgttaaagactttaa |
1483 |
Q |
| |
|
||||||| || ||||||| | ||||| ||| ||||||||||| | |||||||||||||||||||| ||| | |||| |||||||||||| | ||| |
|
|
| T |
13167379 |
ttttacagttcaaaacatccagacgtttcagttggggaagatacctgatggtttcaggcaagcttctgatgattaaaccagacagtgttaaagagtctaa |
13167280 |
T |
|
| Q |
1484 |
cgacgatagtaaggagatactatctgggaattcagacaatataggaatataaataaaggttaattcttttacactctggaaggcaggactagaaaataat |
1583 |
Q |
| |
|
||||||||||| |||||| | ||||| ||||||||| | |||| || ||| |||| |||||||||||||||||||||||||| || || | |
|
|
| T |
13167279 |
tgacgatagtaacgagatattgcttgggatttcagacaacaaaggagcatgggaaaaaattaacctttttacactctggaaggcaggactaggaagtact |
13167180 |
T |
|
| Q |
1584 |
ttatctaaggtgataaaagggtcatcttcacgattctgtggactcgaaagcgaaatatgatcggcaaagttttctggaagatccacaagacaatcactga |
1683 |
Q |
| |
|
|||| ||| || || |||||||| | ||||| | || || ||||| |||| |||| | |||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13167179 |
ttatgtaaagttatgaaagggtcgtgttcacaactccgttgactcataagccaaatttcgtcggaaaagttttcaggaagatccacaagacaatcactga |
13167080 |
T |
|
| Q |
1684 |
ttggaaagacaaaccgtttaaggttttgtttatgcaatattgacgatggaagttcattccgatcccactctgataaacacaaatccaaaccatcaacgga |
1783 |
Q |
| |
|
| |||||||| |||| | |||| |||| ||||||||||||||| |||||||||||||||| |||||| |||| ||| ||||| |||||||||||||||| |
|
|
| T |
13167079 |
taggaaagactaaccttgtaagattttttttatgcaatattgatgatggaagttcattcccatcccattctgtcaaaaacaaaaccaaaccatcaacgga |
13166980 |
T |
|
| Q |
1784 |
tgaaaatgtgactgagaactctttgagattgatgcaatccctagcttccaatttccggagcgctggtgaacaagtgttactcgaaaggctcttaagcgat |
1883 |
Q |
| |
|
| |||||||||||||| |||||||||||| |||| | |||| | ||||| |||| ||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
13166979 |
agcaaatgtgactgagatatctttgagattgtcgcaaaacatagcattcaattcacggaaggctggagaacaagtgttactggaaaggctcttaagcgac |
13166880 |
T |
|
| Q |
1884 |
gtacactcgaatacatttaaaacttcaagcttttggagaaggaaaattgatgaatcaacttcaggcatgctttcacaataacgaagtattacatgtttta |
1983 |
Q |
| |
|
||||| | || || |||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||| | |||| ||||| |
|
|
| T |
13166879 |
gtacatcctaacacgcttaatctttcaagcttttgcagaaggaaaattgatgaatcgacttcaggcatgctttcacaatcttcaagtgtgacatatttta |
13166780 |
T |
|
| Q |
1984 |
gatttggggaacccgacacatttggacactctatcagctttttggagccaccgaggtcaagtatctctaaatttggcaaatcctataacaatatacaatt |
2083 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||| |||||| ||||||| |||||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
13166779 |
gatttggggaaccagacacatttggacactctatcagctttctggagcgaccgagatcaagtacctctaaatttggcatatcctgtaacaatataccatt |
13166680 |
T |
|
| Q |
2084 |
ggtcaaacaagttagtgcattttcttaaattctatagattt |
2124 |
Q |
| |
|
||||||| |||||||| |||||||||||||| || |||||| |
|
|
| T |
13166679 |
ggtcaaaaaagttagtacattttcttaaattatacagattt |
13166639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 1195 - 2099
Target Start/End: Original strand, 5605007 - 5605909
Alignment:
| Q |
1195 |
ccatagcatctttcaaaactgtttggtatgaatgtggttccaaatttttgcagttaaggag-ataaataaaacaaggattgggttcctcatatggttcaa |
1293 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||| | | |||||||||||| | | | | ||| ||| | |||| |||||||||||| |
|
|
| T |
5605007 |
ccatagaatctttcaaaactgtttggtatgaatgtggatccaattctacgcagttaaggagcacagttgataca-ggagtaggtttgtcatatggttcac |
5605105 |
T |
|
| Q |
1294 |
tcgttgaactcaacactttctcaagagattcacaattcgagacaaccaaaactggaatgaactgtgaaagtgccggaatagattgaatcattttacaatt |
1393 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| | ||| || ||| ||||||||| || |||||||||||||||||||| || || ||||| |
|
|
| T |
5605106 |
tcgttgaactgaacacttcctcaagagattcacaatcccagaaaagcaattttggaatgaagcgttgaagtgccggaatagattgaagcaattcacaata |
5605205 |
T |
|
| Q |
1394 |
gtaaacatcaacacgttcaagtcggggaagatacttaatggtttcaggcaagcttctaatgtccataccatccagtgttaaagactttaacgacgatagt |
1493 |
Q |
| |
|
|||||||| ||| ||| ||||||||||||||||| |||||||||||||||||| ||||| ||| | |||| |||||| || ||| || |||||| |
|
|
| T |
5605206 |
gtaaacattaacccgtatgagtcggggaagatacttgatggtttcaggcaagcttataatgggcatcttaatcagtcttaaagtctctaatgatgatagt |
5605305 |
T |
|
| Q |
1494 |
aaggagatactatctgggaattcagacaatataggaatataaataaaggttaattcttttacactctggaaggcaggactagaaaataatttatctaagg |
1593 |
Q |
| |
|
||||||||||| | ||||| |||| ||| ||| ||||| | ||||||||| ||||||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
5605306 |
aaggagatactgtttgggatttcactcaagatattaatattacaaaaggttaagatttttacactgacgaaggcaggactagaaagtactttatctaagg |
5605405 |
T |
|
| Q |
1594 |
tgataaaagggtcatcttcacgattctgtggactcgaaagcgaaatatgatcggcaaagttttctggaagatccacaagacaatcactgattggaaagac |
1693 |
Q |
| |
|
| || |||| ||||| ||||| ||| ||||||| |||||| |||||| || | ||||||| | |||||||| |||||||||||||| || |||||| | |
|
|
| T |
5605406 |
ttatgaaagagtcatgttcactgttcagtggacttgaaagccaaatatcattgcaaaagtttacaggaagatcaacaagacaatcactaataggaaagcc |
5605505 |
T |
|
| Q |
1694 |
aaaccgtttaaggttttgtttatgcaatattgacgatggaagttcattccgatcccactctgataaacacaaatccaaaccatcaacggatgaaaatgtg |
1793 |
Q |
| |
|
||| | |||||| |||||| |||||||||| || |||||||||||||||| ||||||||||| ||| ||||| ||| ||||||||| ||||||| | |
|
|
| T |
5605506 |
aaagcctttaagattttgtgtatgcaatatagatgatggaagttcattcccatcccactctgtaaaatacaaactcaa---atcaacggaagaaaatggg |
5605602 |
T |
|
| Q |
1794 |
actgagaactctttgagattgatgcaatccctagcttccaatttccggagcgctggtgaacaagtgttactcgaaaggctcttaagcgatgtacactcga |
1893 |
Q |
| |
|
| |||||||||||| ||||||||||||||| || | | ||| ||| |||||||||||||||||||| |||||||||||||| || |||| || |
|
|
| T |
5605603 |
attgagaactctttaagattgatgcaatccataacattcaaaaaattgagggctggtgaacaagtgttactggaaaggctcttaagtgacttaca-tc-t |
5605700 |
T |
|
| Q |
1894 |
atacat--ttaaaacttcaagcttttggagaaggaaaattgatgaatcaacttcaggcatgctttcacaataac-gaagtattacatgttttagatttgg |
1990 |
Q |
| |
|
|| ||| |||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||| || |
|
|
| T |
5605701 |
attcatgattaatctttcaagcttttggagatggaaaattgatgaatcaacttcaagcatgctttcacaatctcttaagtattacatcttttagattcgg |
5605800 |
T |
|
| Q |
1991 |
ggaacccgacacatttggacactctatcagctttttggagccaccgaggtcaagtatctctaaatttggcaaatcctataacaatatacaattggtcaaa |
2090 |
Q |
| |
|
||||| ||||| |||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||||| || ||| ||||||||||| || || |
|
|
| T |
5605801 |
agaaccagacacgtttggacactctatcatctttttggagccactgaggtcaattatctctaaattgggcaaattctgtaataatatacaattcatcgaa |
5605900 |
T |
|
| Q |
2091 |
caagttagt |
2099 |
Q |
| |
|
||||||||| |
|
|
| T |
5605901 |
caagttagt |
5605909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 1195 - 2099
Target Start/End: Complemental strand, 5630363 - 5629461
Alignment:
| Q |
1195 |
ccatagcatctttcaaaactgtttggtatgaatgtggttccaaatttttgcagttaaggag-ataaataaaacaaggattgggttcctcatatggttcaa |
1293 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||| | | |||||||||||| | | | | ||| ||| | |||| |||||||||||| |
|
|
| T |
5630363 |
ccatagaatctttcaaaactgtttggtatgaatgtggatccaattctacgcagttaaggagcacagttgataca-ggagtaggtttgtcatatggttcac |
5630265 |
T |
|
| Q |
1294 |
tcgttgaactcaacactttctcaagagattcacaattcgagacaaccaaaactggaatgaactgtgaaagtgccggaatagattgaatcattttacaatt |
1393 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| | ||| || ||| ||||||||| || |||||||||||||||||||| || || ||||| |
|
|
| T |
5630264 |
tcgttgaactgaacacttcctcaagagattcacaatcccagaaaagcaattttggaatgaagcgttgaagtgccggaatagattgaagcaattcacaata |
5630165 |
T |
|
| Q |
1394 |
gtaaacatcaacacgttcaagtcggggaagatacttaatggtttcaggcaagcttctaatgtccataccatccagtgttaaagactttaacgacgatagt |
1493 |
Q |
| |
|
|||||||| ||| ||| ||||||||||||||||| |||||||||||||||||| ||||| ||| | |||| |||||| || ||| || |||||| |
|
|
| T |
5630164 |
gtaaacattaacccgtatgagtcggggaagatacttgatggtttcaggcaagcttataatgggcatcttaatcagtcttaaagtctctaatgatgatagt |
5630065 |
T |
|
| Q |
1494 |
aaggagatactatctgggaattcagacaatataggaatataaataaaggttaattcttttacactctggaaggcaggactagaaaataatttatctaagg |
1593 |
Q |
| |
|
||||||||||| | ||||| |||| ||| ||| ||||| | ||||||||| ||||||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
5630064 |
aaggagatactgtttgggatttcactcaagatattaatattacaaaaggttaagatttttacactgacgaaggcaggactagaaagtactttatctaagg |
5629965 |
T |
|
| Q |
1594 |
tgataaaagggtcatcttcacgattctgtggactcgaaagcgaaatatgatcggcaaagttttctggaagatccacaagacaatcactgattggaaagac |
1693 |
Q |
| |
|
| || |||| ||||| ||||| ||| ||||||| |||||| |||||| || | ||||||| | |||||||| |||||||||||||| || |||||| | |
|
|
| T |
5629964 |
ttatgaaagagtcatgttcactgttcagtggacttgaaagccaaatatcattgcaaaagtttacaggaagatcaacaagacaatcactaataggaaagcc |
5629865 |
T |
|
| Q |
1694 |
aaaccgtttaaggttttgtttatgcaatattgacgatggaagttcattccgatcccactctgataaacacaaatccaaaccatcaacggatgaaaatgtg |
1793 |
Q |
| |
|
||| | |||||| |||||| |||||||||| || |||||||||||||||| ||||||||||| ||| ||||| ||| ||||||||| ||||||| | |
|
|
| T |
5629864 |
aaagcctttaagattttgtgtatgcaatatagatgatggaagttcattcccatcccactctgtaaaatacaaactcaa---atcaacggaagaaaatggg |
5629768 |
T |
|
| Q |
1794 |
actgagaactctttgagattgatgcaatccctagcttccaatttccggagcgctggtgaacaagtgttactcgaaaggctcttaagcgatgtacactcga |
1893 |
Q |
| |
|
| |||||||||||| ||||||||||||||| || | | ||| ||| |||||||||||||||||||| |||||||||||||| || |||| || |
|
|
| T |
5629767 |
attgagaactctttaagattgatgcaatccataacattcaaaaaattgagggctggtgaacaagtgttactggaaaggctcttaagtgacttaca-tc-t |
5629670 |
T |
|
| Q |
1894 |
atacat--ttaaaacttcaagcttttggagaaggaaaattgatgaatcaacttcaggcatgctttcacaataac-gaagtattacatgttttagatttgg |
1990 |
Q |
| |
|
|| ||| |||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||| || |
|
|
| T |
5629669 |
attcatgattaatctttcaagcttttggagatggaaaattgatgaatcaacttcaagcatgctttcacaatctcttaagtattacatcttttagattcgg |
5629570 |
T |
|
| Q |
1991 |
ggaacccgacacatttggacactctatcagctttttggagccaccgaggtcaagtatctctaaatttggcaaatcctataacaatatacaattggtcaaa |
2090 |
Q |
| |
|
||||| ||||| |||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||||| || ||| ||||||||||| || || |
|
|
| T |
5629569 |
agaaccagacacgtttggacactctatcatctttttggagccactgaggtcaattatctctaaattgggcaaattctgtaataatatacaattcatcgaa |
5629470 |
T |
|
| Q |
2091 |
caagttagt |
2099 |
Q |
| |
|
||||||||| |
|
|
| T |
5629469 |
caagttagt |
5629461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 1195 - 2109
Target Start/End: Complemental strand, 5553831 - 5552912
Alignment:
| Q |
1195 |
ccatagcatctttcaaaactgtttggtatgaatgtggttccaaatttttgcagttaa---ggagataaataaaacaaggattgggttcctcatatggttc |
1291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| |||| || || || |||||| ||||| |||| |
|
|
| T |
5553831 |
ccatagcatctttcaaaactgtttggtatgaatgtgtatccaaattttggcagttaataaggaccacaatataataaagactgggtttgtcatacagttc |
5553732 |
T |
|
| Q |
1292 |
aatcgttgaactcaacactttctcaagagattcacaattcgagacaaccaaaactggaatgaactgtgaaagtgccggaatagattgaatcattttacaa |
1391 |
Q |
| |
|
| ||||||||| ||||||| ||||||||||||||||| | ||||| |||| ||||||||| | |||| |||||||||||||||| || |||||| |
|
|
| T |
5553731 |
acccgttgaacttaacacttcctcaagagattcacaatcccagacactcaaatttggaatgaagcgataaagcgccggaatagattgaagcaatttacat |
5553632 |
T |
|
| Q |
1392 |
ttgtaaacatcaacacgttcaagtcggggaagatacttaatggtttcaggcaagcttctaatgtccataccatccagtgttaaagactttaacgacgata |
1491 |
Q |
| |
|
||| |||||| ||| | ||| ||||||||||||||| || |||||||| |||| ||||| |||||| |||| ||||| | ||| || |||| |
|
|
| T |
5553631 |
ttggaaacatgaaccaatcggagttggggaagatacttaagggattcaggcaggcttttaatggccatacacagcagtcttaaaatcactaatgatgata |
5553532 |
T |
|
| Q |
1492 |
gtaaggagatactatctgggaattcagacaatataggaatataaataaaggttaattcttttacactctggaaggcaggactagaaaataat----ttat |
1587 |
Q |
| |
|
|||| |||||||| ||||||| |||| |||| |||||||| | || || | | |||||||||||| || |||||||||||| |||| | | | |||| |
|
|
| T |
5553531 |
gtaaagagatactgtctgggatttcatacaagataggaatttcaacaatgatcaattcttttacagtccggaaggcaggaccagaagaaagtatttttat |
5553432 |
T |
|
| Q |
1588 |
ctaaggtgataaaagggtcatcttcacgattctgtggactcgaaagcgaaatatgatcggcaaagttttctggaagatccacaagacaatcactgattgg |
1687 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| | |||| ||| ||| | |||| ||||||||| ||||||||||||||||||||||| || | |
|
|
| T |
5553431 |
ctaaggtgatgaaagggtcattttcacgattcttttcactcacaagataaaaagaatcgcaaaagttttcaggaagatccacaagacaatcactaataga |
5553332 |
T |
|
| Q |
1688 |
aaagacaaaccgtttaaggttttgtttatgcaatattgacgatggaagttcattccgatcccactctg-ataaacacaaatccaaaccatcaacggatga |
1786 |
Q |
| |
|
|||| |||| |||||| |||||| ||||||||| || |||||||||||||||| || |||||||| ||||| | | | |||| | |||||| | |
|
|
| T |
5553331 |
aaagccaaagtttttaagattttgtgcatgcaatatagatgatggaagttcattcccataccactctgtataaagccca-tgcaaa---tgaacggaagt |
5553236 |
T |
|
| Q |
1787 |
aaatgtgactgagaactctttgagattgatgcaatccctagcttccaatttccggagcgctggtgaacaagtgttactcgaaaggctcttaagcgatgta |
1886 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||| || || | ||||| |||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
5553235 |
taatgggactgagaactctttaagattgatgcaatatacagaactaaaatgacggagggctggtgaacaagtgttactggaaaggctcttaagcgacgta |
5553136 |
T |
|
| Q |
1887 |
cactcgaatacatttaaaacttcaagcttttggagaaggaaaattgatgaatcaacttcaggcatgctttcacaataacgaagtattacatgttttagat |
1986 |
Q |
| |
|
||| | | || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| | | ||||||||| | |||||||| |
|
|
| T |
5553135 |
cacccacacacgtttaatctttcaagcttttggagatggaaaattgatgaatcaacttcaggcatgctttcacattctctaagtattacttcttttagat |
5553036 |
T |
|
| Q |
1987 |
ttggggaacccgacacatttggacactctatcagctttttggagccaccgaggtcaagtatctctaaatttggcaaatcctataacaatatacaattggt |
2086 |
Q |
| |
|
| || ||||| ||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| || ||||||||||||||| | |
|
|
| T |
5553035 |
tcggagaaccagacacgtttggacactctatcagctttttggagccattgaggtcaattatctctaaattgggcaaattctgtaacaatatacaattcat |
5552936 |
T |
|
| Q |
2087 |
c-aaacaagttagtgcattttctt |
2109 |
Q |
| |
|
| |||||||||||| ||||||||| |
|
|
| T |
5552935 |
caaaacaagttagtacattttctt |
5552912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 283 - 876
Target Start/End: Complemental strand, 5648768 - 5648181
Alignment:
| Q |
283 |
cttctgtcgaaccaagcaaagtgttcatgtgctctccaccaaatccaatatgcataagctcttcaagtaaagacctactcataaaccaaattattttgca |
382 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| ||| ||| ||||||||||||||| ||||||||||| || |||| |||||||| || ||||||||| |
|
|
| T |
5648768 |
cttctgtggaaccaaacaaagtgttcatgtggtctacacgaaatccaatatgcatgagctcttcaagagaatacctgttcataaacagaaatattttgca |
5648669 |
T |
|
| Q |
383 |
gtaccataaaatggaacagagtcaataaactaaatttattccctaagttatcggtataatgagtgcgaggaagattatgtacctcatatcatatgtttca |
482 |
Q |
| |
|
||| ||||||||||||||||| | |||||| |||||| |||| || ||||| ||| | |||||| |||||| |||||||||||| ||||| | |||| |
|
|
| T |
5648668 |
gtaacataaaatggaacagagcctctaaactgaatttagtccccaaattatcagtaaagtgagtgataggaaggttatgtacctcaaatcatgtctttcg |
5648569 |
T |
|
| Q |
483 |
tctaattcgaagtttgatggcagagttccaaagatgtctagctttaatttgtttgatggaggaattgtttcttctagatcatctgattcaaaatttgttg |
582 |
Q |
| |
|
||||||| | |||||||||| ||||||||| |||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
5648568 |
tctaattgtaggtttgatggcggagttccaacgatgtctagctttaatttgtttcttggaggaaacgtttcttcgagatcatctgattcaaaatttgttg |
5648469 |
T |
|
| Q |
583 |
gaggaattgtttcttctcgatgattggattgaaaatttgatgaagatgcagatgcagtttcttcttgatcatgagattcaaaaattgttgaaggaatagt |
682 |
Q |
| |
|
||| || | |||||||| | | |||||||||||||| |||||||| | ||| || ||||||| | |||| |||||| |||||||||||| || || |
|
|
| T |
5648468 |
gagaaactatttcttcttgctcattggattgaaaatctgatgaag----acatg--gtctcttcttcaacatgggattcagaaattgttgaagaaactgt |
5648375 |
T |
|
| Q |
683 |
ttcttccttatatatccagtgaaatccacactcttttatcgatacttcatcatatagatcttcttcaataaagaatctaaatgtaagctttggattgcaa |
782 |
Q |
| |
|
||||| | |||||||||| |||| ||||||||||||||| |||||| ||||||||| ||| | ||||||||| ||||||||||||||| |||| || |
|
|
| T |
5648374 |
ttcttgttgatatatccagcgaaacccacactcttttatctctacttcgtcatatagagtttcattcataaagaatgtaaatgtaagctttgaattgtaa |
5648275 |
T |
|
| Q |
783 |
ctagtgctgttcacatcattaatggattttatttcttcaactgctgccattatctgcttgcaacttgcttgatcataccaagaaaccaaatgat |
876 |
Q |
| |
|
| ||||| ||| | ||| |||||| |||| ||| || |||| ||||||||||||||||| || | |||| ||||| |||||||||||| |
|
|
| T |
5648274 |
atggtgctattcgcgtcagtaatggcttttgtttgttggactgtatccattatctgcttgcaaatttgtggatcgtaccataaaaccaaatgat |
5648181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 184; E-Value: 1e-98
Query Start/End: Original strand, 339 - 848
Target Start/End: Original strand, 5604147 - 5604654
Alignment:
| Q |
339 |
agctcttcaagtaaagacctactcataaaccaaattattttgcagtaccataaaatggaacagagtcaataaactaaatttattccctaagttatcggta |
438 |
Q |
| |
|
|||||||||||| || |||| ||||||||| ||||||||||||||| ||| |||||||||||| | |||||||||||||||||| |||||||| ||| |
|
|
| T |
5604147 |
agctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaatttattccccaagttatcagta |
5604246 |
T |
|
| Q |
439 |
taatgagtgcgaggaagattatgt--acctcatatcatatgtttcatctaat--tcgaagtttgatggcagagttccaaagatgtctagctttaatttgt |
534 |
Q |
| |
|
||||||| | ||||||| ||| | |||||| ||||| ||||||||||||| || |||||| || ||||||||| |||||||| ||||||||| | |
|
|
| T |
5604247 |
taatgagcgataggaagactatatctacctcaaatcatgtgtttcatctaatattctgggtttgacggtggagttccaacgatgtctatctttaatttct |
5604346 |
T |
|
| Q |
535 |
ttgatggaggaattgtttcttctagatcatctgattcaaaatttgttggaggaattgtttcttctcgatgattggattgaaaatttgatgaagatgcaga |
634 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||| |||||| ||||| | |||||||| | | |||||||||||||| |||||||| || |
|
|
| T |
5604347 |
ttcttggaggaattgtttcttcgagatcatctgattcaaaacttgttgcaggaactatttcttcttgctcattggattgaaaatccgatgaaga--ca-- |
5604442 |
T |
|
| Q |
635 |
tgcagtttcttcttgatcatgagattcaaaaattgttgaaggaatagtttcttccttatatatccagtgaaatccacactcttttatcgatacttcatca |
734 |
Q |
| |
|
|||||||||| ||||| |||||| |||||||||||| || |||||||| | |||||||||| |||| ||||||||||||||| |||||||||| |
|
|
| T |
5604443 |
--aggtttcttcttcatcattggattcagaaattgttgaagaaactgtttcttcttgatatatccagcgaaacccacactcttttatctctacttcatca |
5604540 |
T |
|
| Q |
735 |
tatagatcttcttcaataaagaatctaaatgtaagctttggattgcaactagtgctgttcacatcattaatggattttatttcttcaactgctgccatta |
834 |
Q |
| |
|
|||||| ||| |||||||||||| ||||||||||||||||| || |||| ||||||||| ||||| |||||| |||| ||| ||||||||| |||||| |
|
|
| T |
5604541 |
tatagagtttcatcaataaagaatgtaaatgtaagctttggagtgtaactcgtgctgttcccatcactaatggcttttgtttgttcaactgcatccatta |
5604640 |
T |
|
| Q |
835 |
tctgcttgcaactt |
848 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5604641 |
tctgcttgcaactt |
5604654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 184; E-Value: 1e-98
Query Start/End: Original strand, 339 - 848
Target Start/End: Complemental strand, 5631223 - 5630716
Alignment:
| Q |
339 |
agctcttcaagtaaagacctactcataaaccaaattattttgcagtaccataaaatggaacagagtcaataaactaaatttattccctaagttatcggta |
438 |
Q |
| |
|
|||||||||||| || |||| ||||||||| ||||||||||||||| ||| |||||||||||| | |||||||||||||||||| |||||||| ||| |
|
|
| T |
5631223 |
agctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaatttattccccaagttatcagta |
5631124 |
T |
|
| Q |
439 |
taatgagtgcgaggaagattatgt--acctcatatcatatgtttcatctaat--tcgaagtttgatggcagagttccaaagatgtctagctttaatttgt |
534 |
Q |
| |
|
||||||| | ||||||| ||| | |||||| ||||| ||||||||||||| || |||||| || ||||||||| |||||||| ||||||||| | |
|
|
| T |
5631123 |
taatgagcgataggaagactatatctacctcaaatcatgtgtttcatctaatattctgggtttgacggtggagttccaacgatgtctatctttaatttct |
5631024 |
T |
|
| Q |
535 |
ttgatggaggaattgtttcttctagatcatctgattcaaaatttgttggaggaattgtttcttctcgatgattggattgaaaatttgatgaagatgcaga |
634 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||| |||||| ||||| | |||||||| | | |||||||||||||| |||||||| || |
|
|
| T |
5631023 |
ttcttggaggaattgtttcttcgagatcatctgattcaaaacttgttgcaggaactatttcttcttgctcattggattgaaaatccgatgaaga--ca-- |
5630928 |
T |
|
| Q |
635 |
tgcagtttcttcttgatcatgagattcaaaaattgttgaaggaatagtttcttccttatatatccagtgaaatccacactcttttatcgatacttcatca |
734 |
Q |
| |
|
|||||||||| ||||| |||||| |||||||||||| || |||||||| | |||||||||| |||| ||||||||||||||| |||||||||| |
|
|
| T |
5630927 |
--aggtttcttcttcatcattggattcagaaattgttgaagaaactgtttcttcttgatatatccagcgaaacccacactcttttatctctacttcatca |
5630830 |
T |
|
| Q |
735 |
tatagatcttcttcaataaagaatctaaatgtaagctttggattgcaactagtgctgttcacatcattaatggattttatttcttcaactgctgccatta |
834 |
Q |
| |
|
|||||| ||| |||||||||||| ||||||||||||||||| || |||| ||||||||| ||||| |||||| |||| ||| ||||||||| |||||| |
|
|
| T |
5630829 |
tatagagtttcatcaataaagaatgtaaatgtaagctttggagtgtaactcgtgctgttcccatcactaatggcttttgtttgttcaactgcatccatta |
5630730 |
T |
|
| Q |
835 |
tctgcttgcaactt |
848 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5630729 |
tctgcttgcaactt |
5630716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 183; E-Value: 4e-98
Query Start/End: Original strand, 1285 - 2113
Target Start/End: Complemental strand, 32635598 - 32634768
Alignment:
| Q |
1285 |
atggttcaatcgttgaactcaacactttctcaagagattcacaattcgagacaaccaaaactggaatgaactgtgaaagtgccggaatagattgaatcat |
1384 |
Q |
| |
|
|||||||| || ||| || |||||||||||||||||||||||||||| ||||| |||| ||||||||||| || ||| |||||||||| | ||| |
|
|
| T |
32635598 |
atggttcactcattggacgcaacactttctcaagagattcacaattcctgacaatgaaaaatggaatgaactttggaagagccggaatagc----agcat |
32635503 |
T |
|
| Q |
1385 |
tttacaattgtaaacatcaacacgttcaagtcggggaagatacttaatggtttcaggcaagcttctaatgtccataccatccagtgttaaagactttaac |
1484 |
Q |
| |
|
|||||||||| ||||| || || ||| ||| ||||||||||| |||||||||||||||||||||||||| | ||| | ||| ||||||||||||| |
|
|
| T |
32635502 |
tttacaattgaaaacactaagactttcgagttggggaagatacataatggtttcaggcaagcttctaatggctatattaaatagtcttaaagactttaat |
32635403 |
T |
|
| Q |
1485 |
gacgatagtaaggagatactatctgggaattcagacaatataggaatataaata------aaggttaattcttttacactctggaaggcaggactagaaa |
1578 |
Q |
| |
|
|||||||||||||| || | ||||||| ||||||||| | ||||| || | || || |||| | |||||||||| |||| |||||||||| || |
|
|
| T |
32635402 |
gacgatagtaaggaaatgttgtctgggatttcagacaagaaaggaacatcattaccaaataatattaagtgttttacactcaggaaagcaggactaggaa |
32635303 |
T |
|
| Q |
1579 |
ataatttatctaaggtgataaaagggtcatcttcacgattctgtggactcgaaagcgaaatatgatcggcaaagttttctggaagatccacaagacaatc |
1678 |
Q |
| |
|
|| ||||| |||| |||| ||| |||| ||||| ||| ||| | ||| |||| | ||| || |||||||||||| |||||||||||||||| ||| |
|
|
| T |
32635302 |
gtattttatgtaagatgatggaagagtcacgttcacctttcagtgaattcgcaagccagatacaattggcaaagttttcaggaagatccacaagactatc |
32635203 |
T |
|
| Q |
1679 |
actgattggaaagacaaaccgtttaaggttttgtttatgcaatattgacgatggaagttcattccgatcccactctgataaacacaaatccaaaccatca |
1778 |
Q |
| |
|
|||||| ||| | | ||| || ||| |||| | ||||||||||||| ||||||| || ||| | | |||| | |||| |||| |||| |||| |
|
|
| T |
32635202 |
actgataggagataaaaaatattcaagattttttgtatgcaatattgatgatggaaatttatttgcaccgaactcaggcaaactcaaaaacaaattatca |
32635103 |
T |
|
| Q |
1779 |
acggatgaaaatgtgactgagaactctttgagattgatgcaatccctagcttccaatttccggagcgctggtgaacaagtgttactcgaaaggctcttaa |
1878 |
Q |
| |
|
|| || ||||||||||| |||||||||| |||||||||||||| | | || | ||||| ||||| |||||||||||||||||||| |||| |||||||| |
|
|
| T |
32635102 |
actgaagaaaatgtgacggagaactcttggagattgatgcaattcatggcattcaattcacggagggctggtgaacaagtgttactggaaatgctcttaa |
32635003 |
T |
|
| Q |
1879 |
gcgatgtacactcgaatacatttaaaacttcaagcttttggagaaggaaaattgatgaatcaacttcaggcatgctttcacaataacgaagtattacatg |
1978 |
Q |
| |
|
||||| | || | || ||||| ||||||||||||||||| ||||||||| |||||||||||||||| |||| |||| | |||| |||||| |
|
|
| T |
32635002 |
gcgatatgcatccatctatgattaaactttcaagcttttggagaaagaaaattgacgaatcaacttcaggcaagcttaaacaaccattaagtcttacata |
32634903 |
T |
|
| Q |
1979 |
ttttagatttggggaacccgacacatttggacactctatcagctttttggagccaccgaggtcaagtatctctaaatttggcaaatcctataacaatata |
2078 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||||||| || |||||||||| |
|
|
| T |
32634902 |
ttttagattcagggaaccagatacatttggacactctatcagctttttcgagttgcttaggtcaagtatctccaaatttggcaaattctgtaacaatata |
32634803 |
T |
|
| Q |
2079 |
caattggtcaaacaagttagtgcattttcttaaat |
2113 |
Q |
| |
|
|||||| ||||||| ||||| | ||||||||||| |
|
|
| T |
32634802 |
caattgttcaaacacattagtacgttttcttaaat |
32634768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 163; E-Value: 4e-86
Query Start/End: Original strand, 743 - 1174
Target Start/End: Complemental strand, 32636164 - 32635733
Alignment:
| Q |
743 |
ttcttcaataaagaatctaaatgtaagctttggattgcaactagtgctgttcacatcattaatggattttatttcttcaactgctgccattatctgcttg |
842 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| || | | || |||||||||||||| ||||| |||||||||||||| |||||||||| ||| |
|
|
| T |
32636164 |
ttcttcaataaagaatctaaaagtaagctttggattgtaatt---gatgatcacatcattaatgaattttgtttcttcaactgcttccattatctgtttg |
32636068 |
T |
|
| Q |
843 |
caacttgcttgatcataccaagaaaccaaatgatccgatatcatgtggattgatggatcgaaacgcaataacca-act----gaagaaatttgctcttgt |
937 |
Q |
| |
|
|||||| | |||||||||| |||||| ||||| || |||||||||||||| | || | | ||| || ||| | |||| || | |||||| |
|
|
| T |
32636067 |
caacttcgtggatcataccacaaaaccacatgatgtgacatcatgtggattgaagcattaataa--aatcacaggacttgtggtagaagttggatcttgt |
32635970 |
T |
|
| Q |
938 |
gaaacttgttatatagattctttcacctgaactattgtccaaatagcactcacatccaaaatctacatcatatcccatatggccttgagaaagaaccaag |
1037 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
32635969 |
gaaacttgttatatagatcctttcacctgaactattgtccaagtagcactcacatccaaaatctacaccatatcccatatggcctggagaaagaaccaag |
32635870 |
T |
|
| Q |
1038 |
tagtacgaaaatccctgtaaattagacggaagctcaagagtgacacaaacttgtgtagaagagtaatggaaccaattttccatgccaggcatagcaggta |
1137 |
Q |
| |
|
||||| | ||| ||| ||||||| |||||||||||||| ||| ||||||||||||||| || ||| ||||||| ||| ||||||||||||||||||| |
|
|
| T |
32635869 |
tagtaggcaaaacccaacaaattaggaggaagctcaagagtaacagaaacttgtgtagaagggtgatgaaaccaatattctatgccaggcatagcaggta |
32635770 |
T |
|
| Q |
1138 |
aaaagtaccaaataatttcatcatcatcatataaaga |
1174 |
Q |
| |
|
| |||||||||||||| ||| |||| ||||||||| |
|
|
| T |
32635769 |
agaagtaccaaataataccattgtcataatataaaga |
32635733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 109; E-Value: 6e-54
Query Start/End: Original strand, 937 - 1137
Target Start/End: Original strand, 5604740 - 5604940
Alignment:
| Q |
937 |
tgaaacttgttatatagattctttcacctgaactattgtccaaatagcactcacatccaaaatctacatcatatcccatatggccttgagaaagaaccaa |
1036 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||| ||||| | ||||||||||||||| |||||||| | ||||||||||||||||||||||| | |
|
|
| T |
5604740 |
tgaaacttgttatacatattctttcacctgaactattttccaagttgcactcacatccaaatcctacatcaaaacccatatggccttgagaaagaacaac |
5604839 |
T |
|
| Q |
1037 |
gtagtacgaaaatccctgtaaattagacggaagctcaagagtgacacaaacttgtgtagaagagtaatggaaccaattttccatgccaggcatagcaggt |
1136 |
Q |
| |
|
|||||| | ||| ||| |||||||| |||||||||||||| ||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5604840 |
gtagtaggcaaaacccaacaaattagaaggaagctcaagagtcacagaaacttcagtagaagggtaatggaaccaattttccatgccaggcatagcaggt |
5604939 |
T |
|
| Q |
1137 |
a |
1137 |
Q |
| |
|
| |
|
|
| T |
5604940 |
a |
5604940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 109; E-Value: 6e-54
Query Start/End: Original strand, 937 - 1137
Target Start/End: Complemental strand, 5630630 - 5630430
Alignment:
| Q |
937 |
tgaaacttgttatatagattctttcacctgaactattgtccaaatagcactcacatccaaaatctacatcatatcccatatggccttgagaaagaaccaa |
1036 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||| ||||| | ||||||||||||||| |||||||| | ||||||||||||||||||||||| | |
|
|
| T |
5630630 |
tgaaacttgttatacatattctttcacctgaactattttccaagttgcactcacatccaaatcctacatcaaaacccatatggccttgagaaagaacaac |
5630531 |
T |
|
| Q |
1037 |
gtagtacgaaaatccctgtaaattagacggaagctcaagagtgacacaaacttgtgtagaagagtaatggaaccaattttccatgccaggcatagcaggt |
1136 |
Q |
| |
|
|||||| | ||| ||| |||||||| |||||||||||||| ||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5630530 |
gtagtaggcaaaacccaacaaattagaaggaagctcaagagtcacagaaacttcagtagaagggtaatggaaccaattttccatgccaggcatagcaggt |
5630431 |
T |
|
| Q |
1137 |
a |
1137 |
Q |
| |
|
| |
|
|
| T |
5630430 |
a |
5630430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 107; E-Value: 1e-52
Query Start/End: Original strand, 935 - 1153
Target Start/End: Complemental strand, 5648125 - 5647907
Alignment:
| Q |
935 |
tgtgaaacttgttatatagattctttcacctgaactattgtccaaatagcactcacatccaaaatctacatcatatcccatatggccttgagaaagaacc |
1034 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||| ||||| | |||||||||| ||||| || | |||| |||| ||||||||||| |
|
|
| T |
5648125 |
tgtgaaacttgttatacagatcctttcacctgaactattgtccaagtagcatttacatccaaaacctacaccaaaatccatgatgcctggagaaagaacc |
5648026 |
T |
|
| Q |
1035 |
aagtagtacgaaaatccctgtaaattagacggaagctcaagagtgacacaaacttgtgtagaagagtaatggaaccaattttccatgccaggcatagcag |
1134 |
Q |
| |
|
|||||||| | ||| ||| |||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
5648025 |
aagtagtatgcaaaacccaacaaattagaaggaagctcaagagtgtcagaaacttgtgtagaagagtaatggaaccaattttccgttccaggcatagcag |
5647926 |
T |
|
| Q |
1135 |
gtaaaaagtaccaaataat |
1153 |
Q |
| |
|
|||| |||| | ||||||| |
|
|
| T |
5647925 |
gtaagaagttcaaaataat |
5647907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 104; E-Value: 6e-51
Query Start/End: Original strand, 952 - 1143
Target Start/End: Complemental strand, 5554089 - 5553898
Alignment:
| Q |
952 |
agattctttcacctgaactattgtccaaatagcactcacatccaaaatctacatcatatcccatatggccttgagaaagaaccaagtagtacgaaaatcc |
1051 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||| ||| ||| |||| ||| ||| | ||||| ||||||||||||||||| | ||| || |
|
|
| T |
5554089 |
agattctttcacctgaactattgtccaagtagcactcatatccgaaacctatatcagatcttatacgaccttgtgaaagaaccaagtagtaggcaaaacc |
5553990 |
T |
|
| Q |
1052 |
ctgtaaattagacggaagctcaagagtgacacaaacttgtgtagaagagtaatggaaccaattttccatgccaggcatagcaggtaaaaagt |
1143 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
5553989 |
caacaaattagaaggaagctcaagagtgacacaaacttcagtagaagagtaatggaaccaattttccatgccaggcatagctggtaagaagt |
5553898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 99; E-Value: 6e-48
Query Start/End: Original strand, 641 - 891
Target Start/End: Complemental strand, 5554400 - 5554150
Alignment:
| Q |
641 |
ttcttcttgatcatgagattcaaaaattgttgaaggaatagtttcttccttatatatccagtgaaatccacactcttttatcgatacttcatcatataga |
740 |
Q |
| |
|
|||||||| |||||| |||||| ||||| | |||| || ||||| || | ||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5554400 |
ttcttcttcatcatgtgattcagaaattatcgaagaaactgtttcctcttgataaatccagtgaaatccacactcttttatttctacttcatcatataga |
5554301 |
T |
|
| Q |
741 |
tcttcttcaataaagaatctaaatgtaagctttggattgcaactagtgctgttcacatcattaatggattttatttcttcaactgctgccattatctgct |
840 |
Q |
| |
|
||| | |||||||||| |||| ||||||||||||| | |||| ||| ||||||| ||| ||||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
5554300 |
gtttcattaataaagaatgtaaacgtaagctttggatcgtaactggtgttgttcacgtcagtaatgacttttatttgttcaactgcatccattatctgct |
5554201 |
T |
|
| Q |
841 |
tgcaacttgcttgatcataccaagaaaccaaatgatccgatatcatgtgga |
891 |
Q |
| |
|
|||||||| || |||||||||| ||||||||||||| || |||||||||| |
|
|
| T |
5554200 |
tgcaactttctggatcataccataaaaccaaatgatctgaaatcatgtgga |
5554150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 75; E-Value: 1e-33
Query Start/End: Original strand, 682 - 804
Target Start/End: Original strand, 9862116 - 9862238
Alignment:
| Q |
682 |
tttcttccttatatatccagtgaaatccacactcttttatcgatacttcatcatatagatcttcttcaataaagaatctaaatgtaagctttggattgca |
781 |
Q |
| |
|
||||||| | |||||||||| ||| |||||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
9862116 |
tttcttcttgatatatccagcgaaccccacactcttttatcgctacttcatcatatatagtttcatcaataaagaatctaaatgtaagctttggattgta |
9862215 |
T |
|
| Q |
782 |
actagtgctgttcacatcattaa |
804 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
9862216 |
actagttctgttcacatcattaa |
9862238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 54; E-Value: 4e-21
Query Start/End: Original strand, 516 - 617
Target Start/End: Complemental strand, 5554504 - 5554403
Alignment:
| Q |
516 |
atgtctagctttaatttgtttgatggaggaattgtttcttctagatcatctgattcaaaatttgttggaggaattgtttcttctcgatgattggattgaa |
615 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||| ||||||||| |||| ||||||||||||||||||| || | ||||||| ||| ||||||||||| |
|
|
| T |
5554504 |
atgtctagctttaatttctttcttggaggaattgtgtcttctagagcatccgattcaaaatttgttggagaaactatttcttcatgatcattggattgaa |
5554405 |
T |
|
| Q |
616 |
aa |
617 |
Q |
| |
|
|| |
|
|
| T |
5554404 |
aa |
5554403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 44; E-Value: 0.000000000000004
Query Start/End: Original strand, 1193 - 1284
Target Start/End: Complemental strand, 5647852 - 5647761
Alignment:
| Q |
1193 |
atccatagcatctttcaaaactgtttggtatgaatgtggttccaaatttttgcagttaaggagataaataaaacaaggattgggttcctcat |
1284 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||| ||||| || ||| |||||| |||| ||| |||||||||| ||| ||| |||| |
|
|
| T |
5647852 |
atccatagcctctttcaaaactgtctggtatgaatgtggatccaatttattgtagttaatgagaaaaagaaaacaaggaatggattcttcat |
5647761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.00000000000006
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 5579549 - 5579492
Alignment:
| Q |
116 |
atcatttgagagtgaaatatcatttatggactaatctttgaaccagcaggcaggattt |
173 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
5579549 |
atcatttgagagtaaaataccatttattgactgatctttgaaccagcaggcaggattt |
5579492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 337
Target Start/End: Complemental strand, 14418190 - 14418118
Alignment:
| Q |
265 |
ttcagctgttgcttttgccttctgtcgaaccaagcaaagtgttcatgtgctctccaccaaatccaatatgcat |
337 |
Q |
| |
|
|||||||||||||||| ||||| | ||| || ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14418190 |
ttcagctgttgcttttttcttctcttaaacaaaacaaagtgatcatgtgctctccaccaaatccaatatgcat |
14418118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.0000000000009
Query Start/End: Original strand, 408 - 467
Target Start/End: Complemental strand, 5554828 - 5554769
Alignment:
| Q |
408 |
taaactaaatttattccctaagttatcggtataatgagtgcgaggaagattatgtacctc |
467 |
Q |
| |
|
|||| |||||||| |||| |||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
5554828 |
taaattaaatttagtccccaagttatcagtataatgagtgctaggaagattatgtacctc |
5554769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 5579624 - 5579570
Alignment:
| Q |
18 |
tgtttgagtaagagtcagaggcatatagcagtaaagatattatcacaaggcatca |
72 |
Q |
| |
|
||||||| ||||| ||||||||||||| |||| ||||||| |||||||| ||||| |
|
|
| T |
5579624 |
tgtttgaataagaatcagaggcatatatcagttaagatatcatcacaagacatca |
5579570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 1184 - 2114
Target Start/End: Original strand, 11748 - 12677
Alignment:
| Q |
1184 |
ttcaattctatccatagcatctttcaaaactgtttggtatgaatgtggttccaaatttttgcagttaaggagataaataaaacaaggattgggttcctca |
1283 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||||||||| || ||||| ||| |
|
|
| T |
11748 |
ttcaatcccatccatagcatctttcaaaactgtttggtatgaatgtgaatccatgtttttgcagttaaggagcgagataaaacaaacgttaggttcatca |
11847 |
T |
|
| Q |
1284 |
tatggttcaatcgttgaactcaacactttctcaagagattcacaattcgagacaaccaaaactggaatgaactgtgaaagtgccggaatagattgaatca |
1383 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||| || |
|
|
| T |
11848 |
tatggttcacgcgttgaactcaacacttcctcaagagattcacaattccagacaaccaaaatttgaatgaactgtgaaagtgccggaatagattgaagca |
11947 |
T |
|
| Q |
1384 |
ttttacaattgtaaacatcaacacgttcaagtcggggaagatacttaatggtttcaggcaagcttctaatgtccataccatccagtgttaaagactttaa |
1483 |
Q |
| |
|
|||||||| | || |||||| || ||| ||||||||||||||| ||||||||| |||||| ||||| ||||| || ||| ||||| || ||| |
|
|
| T |
11948 |
atttacaatcatgaatatcaacgaatttgagttggggaagatacttaacggtttcaggtaagcttttaatggccatatcaaatagtattaaactctctaa |
12047 |
T |
|
| Q |
1484 |
cgacgatagtaaggagatactatctgggaattcagacaatataggaatataaataaaggttaattcttttacactctggaaggcaggactagaaaataat |
1583 |
Q |
| |
|
||||| ||||||||||| || ||||||| ||||||||| |||||||||| || |||| || | |||||||||||||||| ||||||||| ||| | | |
|
|
| T |
12048 |
tgacgacagtaaggagatgctgtctgggatttcagacaacataggaatatcaacaaagaccaagttttttacactctggaagccaggactagtaaacatt |
12147 |
T |
|
| Q |
1584 |
ttatctaaggtgataaaagggtcatcttcacgattctgtggactcgaaagcgaaatatgatcggcaaagttttctggaagatccacaagacaatcactga |
1683 |
Q |
| |
|
||||| |||||||| |||||||| | || || |||| || | || ||| ||||| |||| |||||||||| | ||||| ||||||||||||||||| |
|
|
| T |
12148 |
ttatccaaggtgatgaaagggtcttgttgacaattccgttgtttcacaagacaaatacgatctacaaagttttcagtaagattcacaagacaatcactga |
12247 |
T |
|
| Q |
1684 |
ttggaaagacaaaccgtttaaggttttgtttatgcaatattgacgatggaagttcattccgatcccactctgataaacacaaatccaaaccatcaacgga |
1783 |
Q |
| |
|
||||||||| ||| | ||| |||| | |||||||| ||| |||||||||||||||| |||||| ||| ||||| |||| | |||||||||| | | |
|
|
| T |
12248 |
ttggaaagaaaaagtttccaagattttttgcatgcaataatgatgatggaagttcattcccatcccatcctgttaaactcaaacctaaaccatcaaggta |
12347 |
T |
|
| Q |
1784 |
tgaaaatgtgactgagaactctttgagattgatgcaatccctagcttccaatttccggagcgctggtgaacaagtgttactcgaaaggctcttaagcgat |
1883 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||| | || ||||| ||||| |||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
12348 |
atcaaatgggactgagagatctttgagattgaagcaattaatcgcactcaattgacggagggctggtgaacaagtgttactggaaatgctcttaagcgac |
12447 |
T |
|
| Q |
1884 |
gtacactcgaatacatttaaaacttcaagcttttggagaaggaaaattgatgaatcaacttcaggcatgctttcacaataacgaagtattacatgtttta |
1983 |
Q |
| |
|
|||||| | | || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | | ||||| ||||| ||||| |
|
|
| T |
12448 |
gtacacccagacacgtttaaaacttcaagcttttggagatggaaaattgatgaatcaacttcaggcatgctttcacattcatcaagtagtacatatttta |
12547 |
T |
|
| Q |
1984 |
gatttggggaacccgacacatttggacactctatcagctttttggagccaccgaggtcaagtatctctaaatttggcaaatcctataacaatatacaatt |
2083 |
Q |
| |
|
|||| || ||||| ||||||||||||||||||||||| ||| |||| |||| ||||||| | |||||||||| |||| || || |||||| |||||||| |
|
|
| T |
12548 |
gattcggagaaccagacacatttggacactctatcagttttgtggaaccactcaggtcaattttctctaaattgggcacattctgtaacaaaatacaatt |
12647 |
T |
|
| Q |
2084 |
ggtcaaacaagttagtgcattttcttaaatt |
2114 |
Q |
| |
|
||| | || ||||| |||||||||||||| |
|
|
| T |
12648 |
catcaga-aaattagtacattttcttaaatt |
12677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363; HSP #2
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 337
Target Start/End: Original strand, 529 - 601
Alignment:
| Q |
265 |
ttcagctgttgcttttgccttctgtcgaaccaagcaaagtgttcatgtgctctccaccaaatccaatatgcat |
337 |
Q |
| |
|
|||||||||||||||| ||||| | ||| || ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
529 |
ttcagctgttgcttttttcttctcttaaacaaaacaaagtgatcatgtgctctccaccaaatccaatatgcat |
601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University