View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_low_100 (Length: 242)
Name: NF16378_low_100
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_100 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 45374112 - 45373888
Alignment:
| Q |
1 |
catctaatgcagctcacatagttttcaaactttatgaaaatatgttgccaaatcttgtgtcaaaaatcattgagtttaagttaacttatcgagaatgcaa |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45374112 |
catctaatgcaactcacatagttttcaaactttatgaaaatatgttgccaaatcttgtgtcaaaaatcattaagtttaagttaacttatcgagaatgcaa |
45374013 |
T |
|
| Q |
101 |
cttgcaagttgcaactggtaaattttatcctcagaatagtttgcaaactttgcataatgcttactatactttcaataattgttaattagtacatgctatg |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45374012 |
cttgcaagttgcaactggtaaattttatcctcataatagtttgcaaactttgcataatgcttactatactttcaataattgttaattagtacatgctatg |
45373913 |
T |
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| Q |
201 |
tacttcgtctactaatcgctttcat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
45373912 |
tacttcgtctactaatcgctttcat |
45373888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 45389282 - 45389068
Alignment:
| Q |
1 |
catctaatgcagctcacatagttttcaaactttatgaaaatatgttgccaaatcttgtgtcaaaaatcattgagtttaagttaacttatcgagaatgcaa |
100 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||| ||||||||||||||||| |
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| T |
45389282 |
catcaaatgcagccaacatagttttcaaactttatgaaaatatgttgccaaatcttgtgtcaa---ttattgagcttaagttgacttatcgagaatgcaa |
45389186 |
T |
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| Q |
101 |
cttgcaagttgcaactggtaaattttatcctcagaatagtttgcaaactttgcataatgcttactatactttcaataattgttaattagtacatgctatg |
200 |
Q |
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|||||||||||||||| |||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45389185 |
cttgcaagttgcaactagtaaattttagcctcacaatag---------tttgctcaatgcttactatactttcaataattgttaattagtacacgctatg |
45389095 |
T |
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| Q |
201 |
tacttcgtctactaatcgctttcatct |
227 |
Q |
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|||| |||||| ||||||||||||||| |
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| T |
45389094 |
tactccgtctattaatcgctttcatct |
45389068 |
T |
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