View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16378_low_107 (Length: 227)
Name: NF16378_low_107
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_107 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 4845567 - 4845761
Alignment:
| Q |
16 |
caaaatcatatttaagcatggcttcaacacataattagtaacataaaagcatacataatttttgtttagaaggaaagtagtgatttaataagcatcactc |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4845567 |
caaaatcatatttaaggatggcttcaacacataattagtaacataaatgcatacataatttttgtttagaaggaaagtagtgatttaataagcatcactc |
4845666 |
T |
|
| Q |
116 |
ataccatagtagttgtcacacaactctttttgttcccggcaaacttccaaaataaaaattgttatattacatatcatatagattaagagtaatat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4845667 |
ataccatagtagttgtcacacaactctttttgttcccggcaaacttccaaaataaaaattgttatattacatatcatatagattaagagtaatat |
4845761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 167
Target Start/End: Original strand, 4800398 - 4800486
Alignment:
| Q |
79 |
gtttagaaggaaagtagtgatttaataagcatcactcataccatagtagttgtcacacaactctttttgttcccggcaaacttccaaaa |
167 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || |||||| ||||| |
|
|
| T |
4800398 |
gtttaggaggaaagtagtgatttaataagcatcactcataccatagtagttgtaacagaactctttttgttcctggaaaactttcaaaa |
4800486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 4800275 - 4800342
Alignment:
| Q |
16 |
caaaatcatatttaagca-tggcttcaacacataattagtaacataaaagcatacataatttttgttt |
82 |
Q |
| |
|
||||||||| |||||| | ||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
4800275 |
caaaatcatctttaaggaatggcttcaacacataattagtaaaataaatgcatacataatttttgttt |
4800342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 193
Target Start/End: Original strand, 4772225 - 4772316
Alignment:
| Q |
104 |
taagcatcactcataccatagtagttgtcacacaactcttt--ttgttcccggcaaacttccaaaataaaaattgttatattacatatcata |
193 |
Q |
| |
|
|||||||||||||||| | |||||||| ||||||||||||| |||||| | | |||||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
4772225 |
taagcatcactcatactaaagtagttggcacacaactcttttcttgttcacagaaaactttcaaaatacaaattactatattacatatcata |
4772316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 193
Target Start/End: Original strand, 4790042 - 4790128
Alignment:
| Q |
104 |
taagcatcactcataccatagtagttgtcacacaactctttttgttcccggcaaacttccaaaataaaaattgttatattacatatcata |
193 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||| | | | || |||||| ||||||| | ||| ||||||||||||||||| |
|
|
| T |
4790042 |
taagcatcactcatat-atagtagttggcacacaactctttcttt--ctggtaaactttcaaaatacatattattatattacatatcata |
4790128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University