View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_low_11 (Length: 570)
Name: NF16378_low_11
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_11 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 66 - 570
Target Start/End: Original strand, 38644434 - 38644938
Alignment:
| Q |
66 |
tctttaaaatgtaaccataatcaaccaaaaccaaaatgtagacaatgttgttcaccaagtagacaaaacattaggaggcaccaagtaaaaaatgtgattg |
165 |
Q |
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| T |
38644434 |
tctttaaaatgtaaccataatcaaccaaaaccaaaatgtagacaatgttgttcaccaagtagacaaaacattaggaggcaccaagtaaaaaatgtgattg |
38644533 |
T |
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| Q |
166 |
aaagggctttaaatagatatgatttcaatgtgggatatatgaacaaaccttattttgtgtctccattccctactgttgctctacaaacagaactttcttg |
265 |
Q |
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| T |
38644534 |
aaagggctttaaatagatatgatttcaatgtgggatatatgaacaaaccttattttgtgtctccattccctaatgttgctctacaaacagaactttcttg |
38644633 |
T |
|
| Q |
266 |
aggatataaagttcctaagttcacatggttttctagtgaatatggggagtccatagtagaacacgtggctaggcat-cnnnnnnngtgcagggatatatc |
364 |
Q |
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| T |
38644634 |
a-gatataaagttcctaagttcacatagttttctagtgaatatggggagtccatagtagaacacgtggctaggcataaaaaaaaagtgcagggatatatc |
38644732 |
T |
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| Q |
365 |
aaatgatgaaattttgaaattgaaatatttccctagttcattacattaaccaatgattcctttacttggtttactatctttccacccaatttgttcctaa |
464 |
Q |
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| T |
38644733 |
aaatgatgaaattttgaaattgaaatatttccctagttcattacattaaccaatgattcttttacttggtttactatctttccacccaatttgttcctaa |
38644832 |
T |
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| Q |
465 |
attggtggcagttaaaaaccatctttcatgagaagttctttaagggagaaattgaagtgaatgtcattgatttggccaagattcgaagaaaatatgaaga |
564 |
Q |
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| T |
38644833 |
attggcggcagttaaaaaccatctttcatgagaagttctttaagggagaaattgaagtgaatgtcattgatttggccaagattcgaagaaaatatgaaga |
38644932 |
T |
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| Q |
565 |
ttcatt |
570 |
Q |
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| T |
38644933 |
ttcatt |
38644938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 38661295 - 38661121
Alignment:
| Q |
23 |
aggaaaattagaatcggcaaactattcgagtttcaagaatagatctttaaaatgtaaccataatcaaccaaaaccaaaatgtagacaatgttgttcacca |
122 |
Q |
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| T |
38661295 |
aggaaaatttgaatccaccaactattcgaatttcaagaatagatacttgaaatgtgaacataatcaaccaaaatcaaaatg-agacaatgttgtccagca |
38661197 |
T |
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| Q |
123 |
agtagacaaaacattaggaggcaccaagtaaaaaatgtgattgaaagggctttaaatagatatgatttcaatgtggg |
199 |
Q |
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| T |
38661196 |
agtagacaaaacactggg-ggcaccaagtaaaaaatgcgatcgaaatggcttaaaatagacatgatttcaatgtggg |
38661121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 212 - 341
Target Start/End: Complemental strand, 38660069 - 38659941
Alignment:
| Q |
212 |
accttattttgtgtctccattccctactgttgctctacaaacagaactttcttgaggatataaagttcctaagttcacatggttttctagtgaatatggg |
311 |
Q |
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|||||||||||||||||||||||||| ||||| |||| || | ||||||||||||||||| |||||| | |||||||| | ||||||||||||||| |
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| T |
38660069 |
accttattttgtgtctccattccctaatgttgttctataagccgaactttcttgaggatacaaagtttcaaagttcacttagttttctagtgaata-ccc |
38659971 |
T |
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| Q |
312 |
gagtccatagtagaacacgtggctaggcat |
341 |
Q |
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| T |
38659970 |
cagtccatagtagaacacgtggctaggcat |
38659941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 62 - 223
Target Start/End: Complemental strand, 27800825 - 27800662
Alignment:
| Q |
62 |
tagatctttaaaatgtaaccataatcaaccaaaaccaaaatgtagacaatgttgttcaccaa-gtagacaaaacatt-aggaggcaccaagtaaaaaatg |
159 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||| |||| |||||| ||||||||||||| || |||||||||| ||| || |
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| T |
27800825 |
tagatctttaaaatgtaaccataatcaaatgaaatcaaaatgtagacaacattgtccaccaatttagacaaaacattgggggggcaccaagtcaaagata |
27800726 |
T |
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| Q |
160 |
tgattgaaagggctttaaatagatatgatttcaatgtgggatatatgaacaaaccttattttgt |
223 |
Q |
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| T |
27800725 |
gggccgaaaaagctataaacaaacatgatttcaatgtgggatatgtgaacaaaacttattttgt |
27800662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 502 - 570
Target Start/End: Complemental strand, 38657132 - 38657064
Alignment:
| Q |
502 |
ctttaagggagaaattgaagtgaatgtcattgatttggccaagattcgaagaaaatatgaagattcatt |
570 |
Q |
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| T |
38657132 |
ctttaagggagaaatggaagcgaatgtcaatgatttggccaagattcaatgaaaatatgatgaatcatt |
38657064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 355 - 393
Target Start/End: Complemental strand, 38658466 - 38658428
Alignment:
| Q |
355 |
gggatatatcaaatgatgaaattttgaaattgaaatatt |
393 |
Q |
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| T |
38658466 |
gggatatatcaaatgatgaaattttgaaattgaaatatt |
38658428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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