View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_low_111 (Length: 222)
Name: NF16378_low_111
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_111 |
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Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 8725560 - 8725491
Alignment:
| Q |
139 |
caaggaagaaaaccatagcacaaaagtaacagaagggcaaaataagtatatcatatgtatagcatctgtg |
208 |
Q |
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| T |
8725560 |
caaggaagaaaaccatagcacaaaagtaacagaagggcaaaataagtatatcatatgtatagcatctgtg |
8725491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 8725681 - 8725627
Alignment:
| Q |
19 |
aaatcaagccaataactaaaactgaaagagtgaacaacaaagggaagataagaag |
73 |
Q |
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| T |
8725681 |
aaatcaaaccaataactaaaacagaaagagtgaataacaaagggaagataagaag |
8725627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 8727563 - 8727517
Alignment:
| Q |
27 |
ccaataactaaaactgaaagagtgaacaacaaagggaagataagaag |
73 |
Q |
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| T |
8727563 |
ccaataacttaaactgaacgtatgaacaacaaagggaagataagaag |
8727517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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