View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_low_112 (Length: 221)

Name: NF16378_low_112
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_low_112
NF16378_low_112
[»] chr3 (14 HSPs)
chr3 (20-208)||(11772668-11772856)
chr3 (133-208)||(11778555-11778630)
chr3 (83-162)||(9853337-9853417)
chr3 (83-170)||(9842392-9842480)
chr3 (45-109)||(10264627-10264691)
chr3 (68-114)||(10130843-10130889)
chr3 (68-114)||(10372126-10372172)
chr3 (71-128)||(10093190-10093247)
chr3 (71-128)||(10200072-10200129)
chr3 (91-129)||(10130689-10130727)
chr3 (91-129)||(10372288-10372326)
chr3 (71-104)||(10134711-10134744)
chr3 (126-201)||(10093259-10093335)
chr3 (126-201)||(10200141-10200217)
[»] chr4 (1 HSPs)
chr4 (74-128)||(17848916-17848970)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 11772668 - 11772856
Alignment:
Q  20 tgtatgtttccttcctaataacctgctgcatgatcccgttagacaaggtagaatgcagtaggatttgtaatattcttaatttgtagctttaagtgaatgt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11772668 tgtatgtttccttcctaataacctgctgcatgatcccgttagacaaagtagaatgcattaggatttgtaatattcttaatttgtagctttaagtgaatgt 11772767  T
Q  120 tcatatgatactgtttcaaattttctgtttcactgctttgttagcatgtgcgatataaagcatagataaacggaacaagtagtataatc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  11772768 tcatatgatactgtttcaaattttctgtttcactgctttgttagcatgtgtaatataaagcatagataaacggaacaagtagtataatc 11772856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 11778630 - 11778555
Alignment:
Q  133 tttcaaattttctgtttcactgctttgttagcatgtgcgatataaagcatagataaacggaacaagtagtataatc 208  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  11778630 tttcaaattttctgtttcactgctttgttagcatgtgtaatataaagcatagataaacggaacaagtagtataatc 11778555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 9853337 - 9853417
Alignment:
Q  83 tttgtaatattcttaatttgtagctttaag-tgaatgttcatatgatactgtttcaaattttctgtttcactgctttgtta 162  Q
    ||||||||||||||||||||| |||||||  |||||| | |||||||||||||| |||| ||||||| || ||||||||||    
T  9853337 tttgtaatattcttaatttgttgctttaaactgaatgctaatatgatactgtttgaaatcttctgttccattgctttgtta 9853417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 9842392 - 9842480
Alignment:
Q  83 tttgtaatattcttaatttgtagcttt-aagtgaatgttcatatgatactgtttcaaattttctgtttcactgctttgttagcatgtgc 170  Q
    ||||||||||||||||||||| ||||| || | |||| | |||||||||||||| |||| ||||||| |  |||||||||| |||||||    
T  9842392 tttgtaatattcttaatttgttgctttaaactaaatgctaatatgatactgtttgaaatcttctgttccgttgctttgttatcatgtgc 9842480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 10264627 - 10264691
Alignment:
Q  45 ctgcatgatcccgttagacaaggtagaatgcagtaggatttgtaatattcttaatttgtagcttt 109  Q
    |||||||||||  | |||||| ||| |||| ||||||||||||||||||||||||||||| ||||    
T  10264627 ctgcatgatccgatcagacaaagtacaatgtagtaggatttgtaatattcttaatttgtaacttt 10264691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 10130843 - 10130889
Alignment:
Q  68 tagaatgcagtaggatttgtaatattcttaatttgtagctttaagtg 114  Q
    |||||||| ||||| ||||||||||||||||||||||||||| ||||    
T  10130843 tagaatgcggtagggtttgtaatattcttaatttgtagcttttagtg 10130889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 10372172 - 10372126
Alignment:
Q  68 tagaatgcagtaggatttgtaatattcttaatttgtagctttaagtg 114  Q
    |||||||| ||||| ||||||||||||||||||||||||||| ||||    
T  10372172 tagaatgcggtagggtttgtaatattcttaatttgtagcttttagtg 10372126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 10093190 - 10093247
Alignment:
Q  71 aatgcagtaggatttgtaatattcttaatttgtagctttaagtgaatgttcatatgat 128  Q
    ||||||||||| ||||||||||||||  ||||||||||||||  |||| |||||||||    
T  10093190 aatgcagtagggtttgtaatattcttgctttgtagctttaagcaaatgctcatatgat 10093247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 10200072 - 10200129
Alignment:
Q  71 aatgcagtaggatttgtaatattcttaatttgtagctttaagtgaatgttcatatgat 128  Q
    ||||||||||| ||||||||||||||  ||||||||||||||  |||| |||||||||    
T  10200072 aatgcagtagggtttgtaatattcttgctttgtagctttaagcaaatgctcatatgat 10200129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 10130689 - 10130727
Alignment:
Q  91 attcttaatttgtagctttaagtgaatgttcatatgata 129  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  10130689 attcttaatttgtaactttaagtgaatgctcatatgata 10130727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 10372326 - 10372288
Alignment:
Q  91 attcttaatttgtagctttaagtgaatgttcatatgata 129  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  10372326 attcttaatttgtaactttaagtgaatgctcatatgata 10372288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 10134711 - 10134744
Alignment:
Q  71 aatgcagtaggatttgtaatattcttaatttgta 104  Q
    ||||||||||| ||||||||||||||||||||||    
T  10134711 aatgcagtagggtttgtaatattcttaatttgta 10134744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 10093259 - 10093335
Alignment:
Q  126 gatactgtttcaaattttctgtttcactgctttgttagcatgtgcgat-ataaagcatagataaacggaacaagtag 201  Q
    |||||||||| |||| ||||||| |||||||||||||| |||||  |  || ||||||| ||||| |||||||||||    
T  10093259 gatactgtttgaaatattctgttccactgctttgttagtatgtggaaacatgaagcataaataaatggaacaagtag 10093335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 10200141 - 10200217
Alignment:
Q  126 gatactgtttcaaattttctgtttcactgctttgttagcatgtgcgat-ataaagcatagataaacggaacaagtag 201  Q
    |||||||||| |||| ||||||| |||||||||||||| |||||  |  || ||||||| ||||| |||||||||||    
T  10200141 gatactgtttgaaatattctgttccactgctttgttagtatgtggaaacatgaagcataaataaatggaacaagtag 10200217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 17848970 - 17848916
Alignment:
Q  74 gcagtaggatttgtaatattcttaatttgtagctttaagtgaatgttcatatgat 128  Q
    |||||| | ||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  17848970 gcagtaagctttgtaatattctgaatttgtagctgtaaatgaatgttcatatgat 17848916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University