View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_low_115 (Length: 217)
Name: NF16378_low_115
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_115 |
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| [»] scaffold0352 (2 HSPs) |
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Alignment Details
Target: scaffold0352 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 16595 - 16487
Alignment:
| Q |
1 |
caatcaaccaaaaccttcatcactgattctttctctgcattccttctctcaattccaatctcacgtccctctccttcgtgtactcattcatgatggtgag |
100 |
Q |
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| T |
16595 |
caatcaaccaaaaccttcatcactaattctttctctgcattccttctcttaattccgatctcacgtccctctccttcgtgtactcattcatgatggtgag |
16496 |
T |
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| Q |
101 |
gctttgatt |
109 |
Q |
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||||||||| |
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| T |
16495 |
gctttgatt |
16487 |
T |
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Target: scaffold0352; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 107 - 206
Target Start/End: Complemental strand, 16463 - 16364
Alignment:
| Q |
107 |
attattcaaagcagatctctaatccttcttgagaaggaaaaataatacacctgcaactgtagtcaattgaaaacaggtttctttaaattctttgctcacc |
206 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
16463 |
attattcaaagcagatctcaaatccttcttgagaaggaaaaacaatacacctgcaactgtagtcaattgaaaacaggttcctttaaattttttgctcacc |
16364 |
T |
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