View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_low_116 (Length: 216)
Name: NF16378_low_116
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_116 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 47582578 - 47582758
Alignment:
| Q |
19 |
atctagcaaaagatatatcttctgtaagaacttgggagaacaagaattgaaatcaccaataatcttttcctgtccctctaatgaaaatataattagttca |
118 |
Q |
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| T |
47582578 |
atctagcaaaagatatatcttctgtaagaacttgggagaacaagaattgaaatcaccaataatcttttcctgtccctctaatgaaaatataattagttca |
47582677 |
T |
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| Q |
119 |
tcaatattttatcaattaggagagggtgttagcttttcgtgaaaaaagtttctgctaggtgttatgtttctactttctgtg |
199 |
Q |
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| T |
47582678 |
tcaatattttatcaattaggagagggtgttagcttttcgtgaaaaaagtttctgctagatgttatgtttctactttctgtg |
47582758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 47570785 - 47570847
Alignment:
| Q |
66 |
tgaaatcaccaataatcttttcctgtccctctaatgaaaatataattagttcatcaatatttta |
129 |
Q |
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| T |
47570785 |
tgaaatcaccaataatcttttcctatccctctaatgaaaa-ataaatagttaaacaatatttta |
47570847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 47573217 - 47573269
Alignment:
| Q |
101 |
gaaaatataattagttcatcaatattttatcaattaggagagggtgttagcttt |
154 |
Q |
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| T |
47573217 |
gaaaatataagtagttcatcaatattttaagaactaggagagggt-ttagcttt |
47573269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 47566249 - 47566304
Alignment:
| Q |
73 |
accaataatcttttcctgtccctctaatgaaaatataattagttcatcaatatttta |
129 |
Q |
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| T |
47566249 |
accaataatcttttcttatccctcaaatgaaaa-ataaatagttaatcaatatttta |
47566304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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