View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16378_low_118 (Length: 210)
Name: NF16378_low_118
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_118 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 2744813 - 2744859
Alignment:
| Q |
146 |
catgaaaatagataaaggaaatcgtgaacacatgaaaaacatttgtg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2744813 |
catgaaaatagataaaggaaatcgtgaacacatgaaaaaaatttgtg |
2744859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 2741891 - 2741926
Alignment:
| Q |
16 |
aatatacatactttgttccattttattgcatacctc |
51 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
2741891 |
aatatacatactttgttccattttattgcatacctc |
2741926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University