View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16378_low_12 (Length: 567)
Name: NF16378_low_12
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 484; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 17 - 551
Target Start/End: Original strand, 12287209 - 12287740
Alignment:
| Q |
17 |
aatatcaaccaaacagcgtattagcggatatatccaaggaattgttttgtgctgcaagttatacaaagtcaaagtcatcaacgaaaatgtatattttgct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
12287209 |
aatatcaaccaaacagcgtattagcggatatatccaaggaattgttttgtgctgcaagttatacaaagtcaaagtcatcaacgaaaacgtatattt-gct |
12287307 |
T |
|
| Q |
117 |
ttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctcctcactttccaaatcaaaatctctaaact |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12287308 |
ttttcaaaccaaatttcaaatacactgaaactacacaccaattacactct--ctttctttccctctttctcgtcactttccaaatcaaaatctctaaact |
12287405 |
T |
|
| Q |
217 |
taagcttattatatattcacacaacttattacataacacctcaattccatcaaaacaagattgaagaacatagcaatatacattcattcttaaagtacta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12287406 |
taagcttattatatattcacacaacttattacataacacctcaattccatcaaaacaagattgaagaacatagcaatatacaatcattcttaaagtacta |
12287505 |
T |
|
| Q |
317 |
acacacatttgtgcacaacactattaaattctatacgatgggtgtagcctcacatacattagaaataacggttatatccggggaaaatattcatgtaact |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12287506 |
acacacatttgtgcacaacactattaaattctatacgatgggtgtagcctcacatacattagaaataacggttatatccggggaaaatattcatgtaatt |
12287605 |
T |
|
| Q |
417 |
gaggatgcatatgttgttgttcgaggtgagtctcttaattgttacacgacgaagacagtgaaagataacgatgattgtaggaaaaactcgagttttcttt |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12287606 |
gaggatgcatatgttgttgttcgaggtgagtctcttaattgttacacgacgaagacagtgaaagataacgatgattgtaggaaaaactcgagttttcttt |
12287705 |
T |
|
| Q |
517 |
catggaatgaaaagtttttgttgaacatgccattg |
551 |
Q |
| |
|
|||||||||| |||||||| || |||||||||||| |
|
|
| T |
12287706 |
catggaatgagaagtttttattaaacatgccattg |
12287740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 68 - 551
Target Start/End: Original strand, 12266675 - 12267164
Alignment:
| Q |
68 |
ctgcaagttatacaaagtcaaagtcatcaacgaaaatgtatattttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctt |
167 |
Q |
| |
|
|||||| | |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| | |
|
|
| T |
12266675 |
ctgcaactaatacaaagtcaaagtcttcaacgaaaacgtatattttgctttttcaaaccaaatttcaattacattgaaaccacaaaccaattacactcgt |
12266774 |
T |
|
| Q |
168 |
tctttctttccctctttctcctcactttccaaatcaaaatctctaaacttaagcttattatatattcacacaacttattacataacacctcaattccatc |
267 |
Q |
| |
|
||||| |||||||||||| |||||||||| ||||||||| | || ||||||||||||||||||| ||||||||||| ||||||||||||||||| || |
|
|
| T |
12266775 |
a-tttctctccctctttctcatcactttccatatcaaaatcccaaaccttaagcttattatatatttacacaacttataacataacacctcaattcactc |
12266873 |
T |
|
| Q |
268 |
aaaacaagattgaagaacatagcaatatacattcattcttaaagta-ctaacacaca--tttgtgcacaac-actattaaattctatacgatgggtgtag |
363 |
Q |
| |
|
| || || |||||| ||||| |||||| |||||||||||| | | |||||| | ||| | |||||| | |||||||||| ||| |||||||||| |
|
|
| T |
12266874 |
acaataaacttgaaggacataacaatatccattcattcttacaccagctaacaggaagttttattcacaactaacattaaattctctactatgggtgtag |
12266973 |
T |
|
| Q |
364 |
cctcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtgagtctcttaattgttacac |
463 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12266974 |
cctcacgcacattagaaatcacggttatatccggcgaaaatattcatgtaaccgaagatgcatacgttgtcgttcgaggtgagtctcttaattgttacac |
12267073 |
T |
|
| Q |
464 |
gacgaagacagtgaaagat---aacgatgattgtaggaaaaactcgagttttctttcatggaatgaaaagtttttgttgaacatgccattg |
551 |
Q |
| |
|
|||||||| |||||||| |||||| ||||| | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12267074 |
aacgaagacgctgaaagataacaacgataattgtggaaaaaattcgagtttcctttcatggaatgaaaagtttttgttgaacatgccattg |
12267164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 68 - 551
Target Start/End: Original strand, 12282401 - 12282890
Alignment:
| Q |
68 |
ctgcaagttatacaaagtcaaagtcatcaacgaaaatgtatattttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctt |
167 |
Q |
| |
|
|||||| | |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| | |
|
|
| T |
12282401 |
ctgcaactaatacaaagtcaaagtcttcaacgaaaacgtatattttgctttttcaaaccaaatttcaattacattgaaaccacaaaccaattacactcgt |
12282500 |
T |
|
| Q |
168 |
tctttctttccctctttctcctcactttccaaatcaaaatctctaaacttaagcttattatatattcacacaacttattacataacacctcaattccatc |
267 |
Q |
| |
|
||||| |||||||||||| |||||||||| ||||||||| | || ||||| ||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
12282501 |
a-tttctctccctctttctcatcactttccatatcaaaatcccaaaccttaaccttattatatattcacacaacttataacataacacctcaattcactc |
12282599 |
T |
|
| Q |
268 |
aaaacaagattgaagaacatagcaatatacattcattcttaaagta-ctaacacaca--tttgtgcacaac-actattaaattctatacgatgggtgtag |
363 |
Q |
| |
|
| || || |||||| ||||| |||||| |||||||||||| | | |||||| | ||| | |||||| | |||||||||| ||| |||||||||| |
|
|
| T |
12282600 |
acaataaacttgaaggacataacaatatccattcattcttacaccagctaacaggaagttttattcacaactaacattaaattctctactatgggtgtag |
12282699 |
T |
|
| Q |
364 |
cctcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtgagtctcttaattgttacac |
463 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12282700 |
cctcacgcacattagaaatcacggttatatccggcgaaaatattcatgtaaccgaagatgcatacgttgtcgttcgaggtgagtctcttaattgttacac |
12282799 |
T |
|
| Q |
464 |
gacgaagacagtgaaagat---aacgatgattgtaggaaaaactcgagttttctttcatggaatgaaaagtttttgttgaacatgccattg |
551 |
Q |
| |
|
|||||||| |||||||| |||||| ||||| | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12282800 |
aacgaagacgctgaaagataacaacgataattgtggaaaaaattcgagtttcctttcatggaatgaaaagtttttgttgaacatgccattg |
12282890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 366 - 551
Target Start/End: Original strand, 12256885 - 12257070
Alignment:
| Q |
366 |
tcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtgagtctcttaattgttacacga |
465 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12256885 |
tcacaaacattagaaattacggttatatctggtgaaaatattcatgtaacggaggatgcatacgttgttgttcgaggtgagtctcttaattgttacacaa |
12256984 |
T |
|
| Q |
466 |
cgaagacagtgaaagataacgatgattgtaggaaaaactcgagttttctttcatggaatgaaaagtttttgttgaacatgccattg |
551 |
Q |
| |
|
| || || ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12256985 |
caaaaacggtgaaagataatgataattgtgggaaaaactcgagttttctttcatggaatgagaagtttttgttgaacatgccattg |
12257070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 366 - 551
Target Start/End: Original strand, 12264277 - 12264462
Alignment:
| Q |
366 |
tcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtgagtctcttaattgttacacga |
465 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12264277 |
tcacaaacattagaaattacggttatatctggtgaaaatattcatgtaacggaggatgcatacgttgttgttcgaggtgagtctcttaattgttacacaa |
12264376 |
T |
|
| Q |
466 |
cgaagacagtgaaagataacgatgattgtaggaaaaactcgagttttctttcatggaatgaaaagtttttgttgaacatgccattg |
551 |
Q |
| |
|
| || || ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12264377 |
caaaaacggtgaaagataatgataattgtgggaaaaactcgagttttctttcatggaatgagaagtttttgttgaacatgccattg |
12264462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 366 - 551
Target Start/End: Original strand, 12270889 - 12271074
Alignment:
| Q |
366 |
tcacatacattagaaataacggttatatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtgagtctcttaattgttacacga |
465 |
Q |
| |
|
||||| ||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12270889 |
tcacaaacattagaaattacgattatatctggagaaaatattcatgtaacagaggatgcatacgttgttgttcgaggtgagtctcttaattgttacacaa |
12270988 |
T |
|
| Q |
466 |
cgaagacagtgaaagataacgatgattgtaggaaaaactcgagttttctttcatggaatgaaaagtttttgttgaacatgccattg |
551 |
Q |
| |
|
|||| || ||||||||||| ||| ||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12270989 |
cgaaaacggtgaaagataatgataattgtgggaaaaactcaagttttctttcatggaatgagaagtttttgttgaacatgccattg |
12271074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 12270659 - 12270734
Alignment:
| Q |
112 |
ttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctc |
187 |
Q |
| |
|
|||||||| |||| || | |||||||||| |||| | || |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12270659 |
ttgcttttccaaatcataattcaaatacattgaaccaaccaaccaattacactctttctttcttcccctctttctc |
12270734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 12256650 - 12256725
Alignment:
| Q |
112 |
ttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctc |
187 |
Q |
| |
|
||||||||||||| |||| | |||||||| |||| | || |||||||||||| ||||||||||| |||| |||||| |
|
|
| T |
12256650 |
ttgctttttcaaatcaaaatccaaatacattgaaccaaccaaccaattacaccctttctttcttcccctttttctc |
12256725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 12264042 - 12264117
Alignment:
| Q |
112 |
ttgctttttcaaaccaaatttcaaatacactgaaactacaaaccaattacactctttctttctttccctctttctc |
187 |
Q |
| |
|
||||||||||||| |||| | |||||||| |||| | || |||||||||||| ||||||||||| |||| |||||| |
|
|
| T |
12264042 |
ttgctttttcaaatcaaaatccaaatacattgaaccaaccaaccaattacaccctttctttcttcccctttttctc |
12264117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 7e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 291 - 551
Target Start/End: Original strand, 29197535 - 29197796
Alignment:
| Q |
291 |
aatatacattcattctt-aaagtactaacacacatttgtgcacaacactattaaattctatacgatgggtgtagcctcacatacattagaaataacggtt |
389 |
Q |
| |
|
|||||| |||||||||| ||||||| ||||| |||||||||||| || ||||| | ||| |||||| |||| |||| |||||||||||||| ||| |
|
|
| T |
29197535 |
aatatatattcattctttaaagtacacacacattcttgtgcacaacaacatcaaattttctactatgggtatagcttcacgcacattagaaataacagtt |
29197634 |
T |
|
| Q |
390 |
atatccggggaaaatattcatgtaactgaggatgcatatgttgttgttcgaggtgagtctcttaattgttacacgacgaagacagtgaaagataacgatg |
489 |
Q |
| |
|
||| |||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||| |||| || | |
|
|
| T |
29197635 |
ataaccggtgaaaatattcatataactgaggatgcatacgttgtcgttcgaggtgagtctcttaattgttacacaacgaaaacagtgaaaaataaagacg |
29197734 |
T |
|
| Q |
490 |
attgtaggaaaaactcgagttttctttcatggaatgaaaagtttttgttgaacatgccattg |
551 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29197735 |
attgtggaaaaaactcgagttttctttcatggaatgaaaagtttttgttgaacatgccattg |
29197796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 29197446 - 29197546
Alignment:
| Q |
134 |
aaatacactgaaactacaaaccaattacactctttctttctttccctctttctcctcactttccaaatcaaaatctctaaacttaagcttattatatatt |
233 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | | ||||||||||||| |||||||| |
|
|
| T |
29197446 |
aaatacaccgaaacaacaaaccaattacactctttctttctttccctctttctcaccactttccatatcaaaa-cccaaaacttaagcttaatatatatt |
29197544 |
T |
|
| Q |
234 |
ca |
235 |
Q |
| |
|
|| |
|
|
| T |
29197545 |
ca |
29197546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 29197351 - 29197413
Alignment:
| Q |
19 |
tatcaaccaaacagcgtattagcggatatatccaaggaattgttttgtgctgcaagttataca |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |
|
|
| T |
29197351 |
tatcaaccaaacagcgtattagcggatatatccacggaattgtcttgtgctgcaagtaataca |
29197413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University