View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_low_14 (Length: 556)
Name: NF16378_low_14
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 14 - 539
Target Start/End: Original strand, 28273277 - 28273807
Alignment:
| Q |
14 |
tcatcaacttcaacacttgctagatttcatttttatatttggtatcattgtgttggattctgaatgtaagtttcggagttttaacattcaaaaattccat |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28273277 |
tcataaacttcaacacttgctagatttcatttttatatttagcatcattgtgttggattctgaatgtaagtttcggagttttaacattcgaaaattccat |
28273376 |
T |
|
| Q |
114 |
tgacttgcagatgctagtttatgaatttatgtcgaatggcacactaagggaccacctttctggtacatcatgtgtttcatttttctaatttacttaattt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28273377 |
tgacttgcagatgctagtttatgaatttatgtcgaatggcacactaagggaccacctttctggtacatcatgtgtttcatttttctaatttacttaattt |
28273476 |
T |
|
| Q |
214 |
gttacacannnnnnnagttattgcattttactggttaataacaaaagagcttaaatatataa----gaatgttttatttt-atatctctaacacaccttc |
308 |
Q |
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| T |
28273477 |
gttacacatttttttagttattgcattttactgattaataacaaaagagcttatatatatatatatgaatgttttatttttatatctctaacacaccttc |
28273576 |
T |
|
| Q |
309 |
tcacacaagacctttttacattttggacatggacaatgatatttggatattgttatttctttcttgcttctcacagtgtccctaattctttattacagtt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28273577 |
tcacacaagacctttttacattttggacatggacaatgatatttggatattgttatttctttcttgcttctcacagtgtccctaattctttgttacagtt |
28273676 |
T |
|
| Q |
409 |
acatcaaacaaacctttgagttttgctatgagattgaagatagcattagagtcagctaaaggtctcatgtatctacacacagaagccgatcctccaatat |
508 |
Q |
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| T |
28273677 |
acatcaaacaaacctttgacctttgctatgagattgaagatagcattagagtcagctaaaggtctcatgtatctacacacagaagccgatcctccaatat |
28273776 |
T |
|
| Q |
509 |
ttcaccgagatgttaaatccagcaacatatt |
539 |
Q |
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| T |
28273777 |
ttcaccgagatgttaaatccagcaacatatt |
28273807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 436 - 539
Target Start/End: Original strand, 28288765 - 28288868
Alignment:
| Q |
436 |
atgagattgaagatagcattagagtcagctaaaggtctcatgtatctacacacagaagccgatcctccaatatttcaccgagatgttaaatccagcaaca |
535 |
Q |
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|||||||||||||| ||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||||| || || ||||| || ||||||||| |
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| T |
28288765 |
atgagattgaagattgcattagggtcggctaaaggtctcatgtatctgcacaatgaagccgatcctccaatattccatcgtgatgtcaaggccagcaaca |
28288864 |
T |
|
| Q |
536 |
tatt |
539 |
Q |
| |
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|||| |
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|
| T |
28288865 |
tatt |
28288868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 28288593 - 28288661
Alignment:
| Q |
121 |
cagatgctagtttatgaatttatgtcgaatggcacactaagggaccacctttctggtacatcatgtgtt |
189 |
Q |
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| T |
28288593 |
cagatgctggtttatgaatatatgccaaatggcacactaagggatcacctttctggtacatcatatgtt |
28288661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 427 - 539
Target Start/End: Complemental strand, 32190308 - 32190196
Alignment:
| Q |
427 |
agttttgctatgagattgaagatagcattagagtcagctaaaggtctcatgtatctacacacagaagccgatcctccaatatttcaccgagatgttaaat |
526 |
Q |
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|||||||| |||||||||||||| || ||| ||||||||||||||| | ||||||||||||||||| |||||||||||||| ||| ||||||| ||| |
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| T |
32190308 |
agttttgccatgagattgaagattgctctagggtcagctaaaggtcttgtctatctacacacagaagctgatcctccaatattccacagagatgtcaaag |
32190209 |
T |
|
| Q |
527 |
ccagcaacatatt |
539 |
Q |
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| T |
32190208 |
ctagcaacatatt |
32190196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 32190791 - 32190728
Alignment:
| Q |
118 |
ttgcagatgctagtttatgaatttatgtcgaatggcacactaagggaccacctttctggtacat |
181 |
Q |
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||||||||||| |||||||||| ||| | ||||| ||||||||||| ||| |||||||||||| |
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| T |
32190791 |
ttgcagatgctggtttatgaatacatgccaaatggaacactaagggatcacatttctggtacat |
32190728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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