View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16378_low_18 (Length: 533)
Name: NF16378_low_18
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_18 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Original strand, 20019783 - 20020288
Alignment:
| Q |
18 |
agtaaaagcagatggagttaggccatcatatttttcaaccttgattctattattatctcattcctcacttgatttcgattgctgcaaccaatcatagtat |
117 |
Q |
| |
|
||||||| ||| || |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
20019783 |
agtaaaaccaggtgtagttaggccatcggatttttcaaccttgattctattattatctccttcctcacttgatttcaattgctgccaccaatcatagtat |
20019882 |
T |
|
| Q |
118 |
ctagaagtaacatttggttgtcgataacactattgaatgagcaaacctatatctattgggattggctcgtcataaatcatccaaggatccttcttacaaa |
217 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
20019883 |
ctagaagtaacatttggttgtctagaacacaattgaatgagcaaatctatatctattgggattggctcgtcataaatcatccacggatccttcttacaaa |
20019982 |
T |
|
| Q |
218 |
gaaaaacctcaccaggaatatcttgatccataccaaattgcattgcgacacgatgagggaaatacttctctttacatcccataccaaccaactcacaaac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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|
| T |
20019983 |
gaaaaacctcaccaggaatatcttgatccataccaaattgcattgcgacacgatgaggaaagtacttctctttacatcccataccaaccaactcacaaac |
20020082 |
T |
|
| Q |
318 |
cctcaaacatcgagaaaacgactctaactctttatctaaacaaggattaccacatctccacatatccttttcattatagacctcaatgcatggtaaattc |
417 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
20020083 |
cctcaaacatcgaaaaaacgactctaactctttatctaaacaaggattaccacatctccacatatccttttcattatagacctcaatacatggtgaattc |
20020182 |
T |
|
| Q |
418 |
tcatatggttgccacaaaaacccatctccaaaacctccacaatccatgaactttttcaagattttagttttcatcatttctattccacctcgtctagcca |
517 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
20020183 |
tcatatggttgccacaaaaatccatctccaaaacctgcacaatccatgacctttttcaagattttagttttcatcatttctattccaccccatctagcca |
20020282 |
T |
|
| Q |
518 |
cctttg |
523 |
Q |
| |
|
|||||| |
|
|
| T |
20020283 |
cctttg |
20020288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 30 - 523
Target Start/End: Complemental strand, 19968486 - 19967990
Alignment:
| Q |
30 |
tggagttaggccatcatatttttcaaccttgattctattattatctcattcctcacttgatttcgattgctgcaaccaatcatagtatctagaagtaaca |
129 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
19968486 |
tggagttaggccatcagatttttcaaccttgattctattattatctccttcctcacttgatttcgattgctgccaccaatcatagtatctagaagtaaca |
19968387 |
T |
|
| Q |
130 |
tttggttgtcgataacactattgaatgagcaaacctatatc---tattgggattggctcgtcataaatcatccaaggatccttcttacaaagaaaaacct |
226 |
Q |
| |
|
|||||||||| | ||||| |||||| ||||||| ||||||| ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19968386 |
tttggttgtctagaacacaattgaaagagcaaatctatatccactattgtgatcggctcgttataaatcatccaaggatccttcttacaaagaaaaacct |
19968287 |
T |
|
| Q |
227 |
caccaggaatatcttgatccataccaaattgcattgcgacacgatgagggaaatacttctctttacatcccataccaaccaactcacaaaccctcaaaca |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19968286 |
caccaggaatatcttgatccataccaaattgcattgcgacacgatgagggaagtacttctctttacatcccataccaaccaactcacaaaccctcaaaca |
19968187 |
T |
|
| Q |
327 |
tcgagaaaacgactctaactctttatctaaacaaggattaccacatctccacatatccttttcattatagacctcaatgcatggtaaattctcatatggt |
426 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19968186 |
tcgagaaaacgacactaactcttcatctaaacaaggattatcacatctccacatatccttttcattatagacctcaatgcatggtgaattctcatatggt |
19968087 |
T |
|
| Q |
427 |
tgccacaaaaacccatctccaaaacctccacaatccatgaactttttcaagattttagttttcatcatttctattccacctcgtctagccacctttg |
523 |
Q |
| |
|
||||||||||| |||| | |||||||| ||||||||| | |||||||||| | ||| ||||| |||| || |||||| | |||||| ||||||| |
|
|
| T |
19968086 |
tgccacaaaaatccattttcaaaacctgcacaatccaagtcctttttcaagttcttatttttcggtatttttactccaccccatctagctacctttg |
19967990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 108 - 499
Target Start/End: Original strand, 19743240 - 19743634
Alignment:
| Q |
108 |
atcatagtatctagaagtaacatttggttgtcgataacactattgaatgagcaaacctatatc---tattgggattggctcgtcataaatcatccaagga |
204 |
Q |
| |
|
||||||| |||||||||||||||||||||||| | ||||| |||||||||||||| ||| ||| ||||| ||| ||||||| |||||||||||||||| |
|
|
| T |
19743240 |
atcatagcatctagaagtaacatttggttgtctagaacacaattgaatgagcaaatctaaatccaatattgtgatcggctcgttataaatcatccaagga |
19743339 |
T |
|
| Q |
205 |
tccttcttacaaagaaaaacctcaccaggaatatcttgatccataccaaattgcattgcgacacgatgagggaaatacttctctttacatcccataccaa |
304 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
19743340 |
tccttcttacagagaaaaacctcaccaggaatatcttgatccataccaaattgcattgcgacacgatgatggaagtacttctctttacatcccataccaa |
19743439 |
T |
|
| Q |
305 |
ccaactcacaaaccctcaaacatcgagaaaacgactctaactctttatctaaacaaggattaccacatctccacatatccttttcattatagacctcaat |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19743440 |
ccaactcacaaaccctcaaacatcgagaaaacgactctaactctttatctaaacaaggattaccacatctccacatatccttttcattatagacctcaat |
19743539 |
T |
|
| Q |
405 |
gcatggtaaattctcatatggttgccacaaaaacccatctccaaaacctccacaatccatgaactttttcaagattttagttttcatcatttcta |
499 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19743540 |
acatggtgaattctcatatggttgccacaaaaatccatctccaaaacctgcacaatccatgacctttttcaagattttagttttcatcatttcta |
19743634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 523
Target Start/End: Original strand, 14855786 - 14856260
Alignment:
| Q |
18 |
agtaaaagcagatggagttaggccatcatatttttcaaccttgattctattattatctcattcctcacttgatttcgattgctgcaaccaatcatagtat |
117 |
Q |
| |
|
||||||| ||| |||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14855786 |
agtaaaaccaggtggagttaggccatcagagttttcaaccttgattctattattatctccttcctcacttgatttcgattgctgccaccaatcatagtat |
14855885 |
T |
|
| Q |
118 |
ctagaagtaacatttggttgtcgataacactattgaatgagcaaacctatatcta---ttgggattggctcgtcataaatcatccaaggatccttcttac |
214 |
Q |
| |
|
|||||| ||| |||||||||||||| ||||||||| ||| ||| |||| || |||||||||||||||||||||||||| |
|
|
| T |
14855886 |
ctagaa---------------------cacaattgaatgagcaaatctatatctagtattgcgatcggcttgttataaatcatccaaggatccttcttac |
14855964 |
T |
|
| Q |
215 |
aaagaaaaacctcaccaggaatatcttgatccataccaaattgcattgcgacacgatgagggaaatacttctctttacatcccatacca--accaactca |
312 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| |
|
|
| T |
14855965 |
a----------------ggaatatcttgatccataccaaattgcattgcgacacgatgagggaagtacttctctttacattccataccaacaccaactca |
14856048 |
T |
|
| Q |
313 |
caaaccctcaaacatcgagaaaacgactctaactctttatctaaacaaggattaccacatctccacatatccttttcattat-agacctcaatgcatggt |
411 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||||||| ||||||||||||| || || |||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
14856049 |
caaactttcaaacatcaagaaaacgacgctaactcttcatctaaacaaggactatcatatctccacatatccttttcattataaaacctcaatgcatggt |
14856148 |
T |
|
| Q |
412 |
aaattctcatatggttgccacaaaaacccatctccaaaacctccacaatccatgaactttttcaagattttagttttcatcatttctattccacctcgtc |
511 |
Q |
| |
|
||||||| ||||| | |||| ||| ||| ||| ||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| | || |
|
|
| T |
14856149 |
gaattctcgtatggctttcacagaaattcattattaaatcctgcacaatccatgacctttttcaagactttagttttcatcatttctattccaccccatc |
14856248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 51 - 493
Target Start/End: Complemental strand, 19963760 - 19963327
Alignment:
| Q |
51 |
ttcaaccttgattctattattatctcattcctcacttgatttcgattgctgcaaccaatcatagtatctagaagtaacatttggttgtcgataacactat |
150 |
Q |
| |
|
|||||| || |||||||| ||||||| ||| || |||||| | ||||||| | ||||||||||||||||| | |||||| ||| |||| | ||||| | |
|
|
| T |
19963760 |
ttcaacttttattctattgttatctccttcatcccttgatattgattgcttccaccaatcatagtatctaaaggtaacacttgcctgtctagaacacaac |
19963661 |
T |
|
| Q |
151 |
tgaatgagcaaacctatat---ctattgggattggctcgtcataaatcatccaaggatccttcttacaaagaaaaacctcaccaggaatatcttgatcca |
247 |
Q |
| |
|
||||||| |||| | ||| |||||| || ||||| || |||| | ||||||||||| |||||||| ||| ||||| ||||||||| |||||||||| |
|
|
| T |
19963660 |
tgaatgaacaaatttttatccgctattgagactggcttgttataatttatccaaggatctttcttacatagagcaaccttaccaggaatgtcttgatcca |
19963561 |
T |
|
| Q |
248 |
taccaaattgcattgcgacacgatgagggaaatacttctctttacatcccataccaaccaactcacaaaccctcaaacatcgagaaaacgactctaactc |
347 |
Q |
| |
|
|||||||||||| || |||||||| ||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
19963560 |
aaccaaattgcatagcaacacgatgcgggaagtacttctctttgcatcccatgccaacaaactcacataccctcaaacatcgagaaaa------------ |
19963473 |
T |
|
| Q |
348 |
tttatctaaacaaggattaccacatctccacatatccttttcattatagacctcaatgcatggtaaattctcatatggttgccacaaaaacccatctcca |
447 |
Q |
| |
|
|| |||||| ||||||||| ||||| || ||| ||| ||||||| |||||| |||||||| ||| |||||||||| |||| ||||||||| |||| || | |
|
|
| T |
19963472 |
ttcatctaagcaaggattatcacatttcaacaaatctttttcatcatagacatcaatgcacggtgaattctcataaggtttccacaaaaatccatttcta |
19963373 |
T |
|
| Q |
448 |
aaacctccacaatccatgaactttttcaagattttagttttcatca |
493 |
Q |
| |
|
|| ||| ||||||||| | || ||||||| ||||| ||||||||| |
|
|
| T |
19963372 |
aatcctgcacaatccaagtcctctttcaagtttttatttttcatca |
19963327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 20026601 - 20027073
Alignment:
| Q |
18 |
agtaaaagcagatggagttaggccatcatatttttcaaccttgattctattattatctcattcctcacttgatttcgattgctgcaaccaatcatagtat |
117 |
Q |
| |
|
||||||| ||| ||| |||||||||| | ||| |||||| || |||||| | |||| || ||| || || ||| | ||||||| | |||||||||||||| |
|
|
| T |
20026601 |
agtaaaaccaggtggtgttaggccataagattcttcaacttttattctactgttatttccttcatccctagatattgattgcttccaccaatcatagtat |
20026700 |
T |
|
| Q |
118 |
ctagaagtaacatttggttgtcgataacactattgaatgagcaaacctatatc---tattgggattggctcgtcataaatcatccaaggatccttcttac |
214 |
Q |
| |
|
|||||||||||| |||| |||| | ||||| | ||||||| |||| | |||| ||||| || ||||| || |||| | ||||||||||| ||||||| |
|
|
| T |
20026701 |
ctagaagtaacacttggctgtctagaacacaactgaatgaacaaatttttatccgctattgagactggcttgttataatttatccaaggatctttcttac |
20026800 |
T |
|
| Q |
215 |
aaagaaaaacctcaccaggaatatcttgatccataccaaattgcattgcgacacgatgagggaaatacttctctttacatcccataccaaccaactcaca |
314 |
Q |
| |
|
| ||| ||||| ||||||||| |||||||||| |||||||||||| || |||||||| ||||| ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
20026801 |
atagagcaaccttaccaggaatgtcttgatccaaaccaaattgcatagcaacacgatgcgggaagtacttctctttgcatcccataccaacaaactcaca |
20026900 |
T |
|
| Q |
315 |
aaccctcaaacatcgagaaaacgactctaactctttatctaaacaaggattaccacatctccacatatcc--ttttcattatagacctcaatgcatggta |
412 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| ||| || ||| | | || ||||||||||||||||||||||| ||| |
|
|
| T |
20026901 |
taccctcaaacatcgagaaaacgatagcaactcttcatctaagcaatc-------caagtcctctt-tcaagttttcattatagacctcaatgcacggtg |
20026992 |
T |
|
| Q |
413 |
aattctcatatggttgccacaaaaacccatctccaaaacctccacaatccatgaactttttcaagattttagttttcatca |
493 |
Q |
| |
|
|||||||||| |||| ||||||||| |||| || ||| ||| ||||||||| | || ||||||| ||||| ||||||||| |
|
|
| T |
20026993 |
aattctcataaggtttccacaaaaatccatttctaaatcctgcacaatccaagtcctctttcaagtttttatttttcatca |
20027073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 19743192 - 19743241
Alignment:
| Q |
18 |
agtaaaagcagatggagttaggccatcatatttttcaaccttgattctat |
67 |
Q |
| |
|
||||||| ||| | |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19743192 |
agtaaaatcaggtagagttaggccatcagatttttcaaccttgattctat |
19743241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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