View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16378_low_2 (Length: 1221)
Name: NF16378_low_2
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 515; Significance: 0; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 16 - 545
Target Start/End: Complemental strand, 53425492 - 53424960
Alignment:
| Q |
16 |
caaggtattacgctgatcctgatgagtacgatga---aacggagaacacggtaagggatagaaatggacatgggacccacacagcttcaacggctgcagg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53425492 |
caaggtattacgctgatcctgatgagtacgatgatgaaacggagaacacggtaagggatagaaatggacatgggacccacacagcttcaacggctgcagg |
53425393 |
T |
|
| Q |
113 |
gaactttgtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctctcct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53425392 |
gaactttgtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctctcct |
53425293 |
T |
|
| Q |
213 |
ggctgttctggctctggcatgcttgctgcattcgacgatgccatttatgatggagttgatgtactttcactctcaattggtccatattcgtctagccgac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53425292 |
ggctgttctggctctggcatgcttgctgcattcgacgatgccatttatgatggagttgatgtactttcactctcaattggtccatattcgtctagccgac |
53425193 |
T |
|
| Q |
313 |
ccaacttaacaactgacccgattgcaatcggagcgttccacgcagtggagcgtggtatagtggtggtttgcagtgctgggaatgaaggatcagagagaaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53425192 |
ccaacttaacaactgacccgattgcaatcggagcgttccacgcagtggagcgtggtatagtggtggtttgcagtgctgggaatgaaggatcagagagaaa |
53425093 |
T |
|
| Q |
413 |
tacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatc |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53425092 |
tacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatc |
53424993 |
T |
|
| Q |
513 |
aaggtacaatctatagcgctctgcgggatatca |
545 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
53424992 |
aaggtacaatctatagcgctctgcggtatatca |
53424960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 585 - 1126
Target Start/End: Complemental strand, 53424920 - 53424378
Alignment:
| Q |
585 |
ctcatgtttgataattgttattgttaagggtcaagccataaatttcacccctctttcaaaatctccccattatccactggtaaccggcgaggctgtcaag |
684 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53424920 |
ctcatgtttgataattgttattgttaagggtcaagccataaatttcacccctctttcaaaatctccccattatccactggtaaccggcgaggctgtcaag |
53424821 |
T |
|
| Q |
685 |
acaactactgcagatttagctgaagcaaggtacgtaagcatgcataaccataacaataaattaacttaaacttgtttgctgggcataattaatcnnnnnn |
784 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
53424820 |
acaactactgcagatttagctgaagcaaggtacgtaagcatgcataaccataacaattaattaacttaaacttgtttgttgggcataattaatcaaaaaa |
53424721 |
T |
|
| Q |
785 |
n-ttattattgtttgttaaatgcaggatgtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcatagatgatgg |
883 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53424720 |
aattattattgtttgttaaatgcaggatgtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcatagatgatgg |
53424621 |
T |
|
| Q |
884 |
ttacacaatctatgacaagattaaaatggtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattatgat |
983 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53424620 |
ttacacaatctatgacaagattaaaatggcgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattatgac |
53424521 |
T |
|
| Q |
984 |
ttcccagcaaccgtggtaagaacaaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagttttttaatttaatttacgg |
1083 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53424520 |
ttcccagcaaccgtggtaagaacaagagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagttttttaatttaatttacgg |
53424421 |
T |
|
| Q |
1084 |
tatatcaagaagattaatggatatacaccatcaatataaagtt |
1126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53424420 |
tatatcaagaagattaatggatatacaccatcaatataaagtt |
53424378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 57 - 532
Target Start/End: Complemental strand, 53309438 - 53308963
Alignment:
| Q |
57 |
aacacggtaagggatagaaatggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcaggga |
156 |
Q |
| |
|
|||||||||||||||| | |||||||||| ||||| ||||| || || || |||||||| | ||||||||||||||||| |||| ||| || | ||||| |
|
|
| T |
53309438 |
aacacggtaagggatacatatggacatggtacccatacagcatcgacagcagcagggaatgtcgtgagtggtgcatcatactatggtcttgcagaaggga |
53309339 |
T |
|
| Q |
157 |
cagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcgacgatgccat |
256 |
Q |
| |
|
|||||||||||||||| |||| |||||||| || |||||||||||||| | |||| ||||| ||||||||| || ||||| || |||||| ||||||| |
|
|
| T |
53309338 |
cagcaaaaggtgggtcctctgagtcgaggttagcgatttacaaagtgtgatttccttcctgttatggctctgggatccttgcagcgttcgacaatgccat |
53309239 |
T |
|
| Q |
257 |
ttatgatggagttgatgtactttcactctcaattggtccatattcgtctagccgacccaacttaacaactgacccgattgcaatcggagcgttccacgca |
356 |
Q |
| |
|
|| |||||||| ||||| ||| || |||| |||| || |||| | | |||||| |||| || || ||||| |||| |||||||| ||||| || |
|
|
| T |
53309238 |
tttcgatggagtagatgtgcttgcaatctcgcttggagcacattcatttttccgaccagacttgacgacagacccaattgtgatcggagcattccatgct |
53309139 |
T |
|
| Q |
357 |
gtggagcgtggtatagtggtggtttgcagtgctgggaatgaaggatcagagagaaa-tacagttattaatgatgctccttggatgttgactgttgcagcc |
455 |
Q |
| |
|
||||||| ||| |||||||| |||||| |||||||||||| ||| || | | ||| ||||||| ||||||| ||||||||||| || ||||||| |||| |
|
|
| T |
53309138 |
gtggagcatggcatagtggttgtttgctctgctgggaatgatggacca-acacaaagtacagttgttaatgacgctccttggatattaactgttgtagcc |
53309040 |
T |
|
| Q |
456 |
accactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaaggtacaatctatagcgct |
532 |
Q |
| |
|
|| || |||||| ||||| | |||||||| ||||||| |||||| ||||||||| ||||||||| |||| |||| |
|
|
| T |
53309039 |
actaccatcgattgtgatatgcagtccaacgttgttttaggtagtggcaaagttattgaggtacaatttataacgct |
53308963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 76 - 522
Target Start/End: Complemental strand, 53432570 - 53432124
Alignment:
| Q |
76 |
atggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcc |
175 |
Q |
| |
|
|||| ||||| ||||||||||| || || || || ||||| ||||||||||||||||||| | || ||| ||||||||||| ||||||| ||||| || |
|
|
| T |
53432570 |
atggtcatggaacccacacagcatcgaccgcggctgggaatgttgtgagtggtgcatcatactttggtcttgcggcagggacgacaaaaggcgggtcccc |
53432471 |
T |
|
| Q |
176 |
tgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcgacgatgccatttatgatggagttgatgta |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||| | || || ||||| | ||| ||||| |||||||| ||||| |||| ||||||||||||||| |
|
|
| T |
53432470 |
tgaatcgaggttggcaatttacaaagtgtgcaatatgttttgctcaggctcggccatccttgcggcattcgatgatgcaatttctgatggagttgatgtg |
53432371 |
T |
|
| Q |
276 |
ctttcactctcaattggtccatattcgtctagccgacccaacttaacaactgacccgattgcaatcggagcgttccacgcagtggagcgtggtatagtgg |
375 |
Q |
| |
|
||||||||||| ||||| | || | | ||| |||| | ||| ||| ||||||||| ||||||||||| || |||||||| || || |||| |
|
|
| T |
53432370 |
ctttcactctctcttggtgggggtccggatcccgaacctgacttgaaaaccgacgtgattgcaataggagcgttccatgccgtggagcgcggcatcgtgg |
53432271 |
T |
|
| Q |
376 |
tggtttgcagtgctgggaatgaaggatcagagagaaatacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatct |
475 |
Q |
| |
|
|||||||| ||| ||||||| ||| | ||||||| |||| ||| |||||||||||||||||| || || |||| ||||| ||||| || ||||| | |
|
|
| T |
53432270 |
tggtttgcgctgccgggaatgctggaccggagagaagtacacttactaatgatgctccttggatattaaccgttggtgccacaactattgaccgtgaatt |
53432171 |
T |
|
| Q |
476 |
tcagtccaatattgttttgggtagtaacaaagttatcaaggtacaat |
522 |
Q |
| |
|
||||||||| |||| ||||||| ||| |||||||||||||||||| |
|
|
| T |
53432170 |
tcagtccaacgttgtcttgggtaataaagaagttatcaaggtacaat |
53432124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 813 - 1056
Target Start/End: Complemental strand, 53431843 - 53431594
Alignment:
| Q |
813 |
tgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcata---gatgatggttacacaatctatgacaagattaaaa |
909 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||||||||||||||||||||| |||||||| ||| ||||||| |||| ||| | || |||| ||||||| |
|
|
| T |
53431843 |
tgtcacccaaattcattaaataagaaaaaagtcaaaggaaagattgtcatttgtgatggaataagtgatgatgattactcaaccaataacaaaattaaaa |
53431744 |
T |
|
| Q |
910 |
tggtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattat---gatttcccagcaaccgtggtaagaac |
1006 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||| || |||| | | | | |||| || ||||||||||| ||||||||| | |
|
|
| T |
53431743 |
cggtgcaagggatgggtggattaggtcttgttcatattactgaccaggatggagctatgatacgtagttatggagacttcccagcaacagtggtaagatc |
53431644 |
T |
|
| Q |
1007 |
aaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcat |
1056 |
Q |
| |
|
|||||||| ||||||| |||||||||| | |||||||||||||||||||| |
|
|
| T |
53431643 |
aaaagatgttgccacactcctccaatacgccaattcaacaaggtatgcat |
53431594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 1117 - 1213
Target Start/End: Complemental strand, 53424158 - 53424062
Alignment:
| Q |
1117 |
atataaagttattttacactcacattcaatcagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttcatctctctc |
1213 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53424158 |
atataaagttattttacactcacattcaattagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttcatctctctc |
53424062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 120 - 520
Target Start/End: Original strand, 48372155 - 48372558
Alignment:
| Q |
120 |
gtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgt---gctctcctggct |
216 |
Q |
| |
|
||||||||||||||||| |||| |||||||| ||||| |||||||||||| || ||||||||||||||||| ||||||||||||| || | ||| | |
|
|
| T |
48372155 |
gtgagtggtgcatcatactatggtctcgcggaagggatagcaaaaggtggttcccctgaatcgaggttggcgatttacaaagtgtgcagcaatattggtt |
48372254 |
T |
|
| Q |
217 |
gttctggctctggcatgcttgctgcattcgacgatgccatttatgatggagttgatgtactttcactctcaattggtccatattcgtctagccgacccaa |
316 |
Q |
| |
|
| |||||||||| ||| ||||| || || |||||||| |||| ||||||||||||||| ||||| ||||| ||||| | || | || ||| | |
|
|
| T |
48372255 |
gctctggctctgccatacttgcggcgtttgacgatgcaatttctgatggagttgatgtgctttcgctctcccttggtaggggtccgagttcccaacctga |
48372354 |
T |
|
| Q |
317 |
cttaacaactgacccgattgcaatcggagcgttccacgcagtggagcgtggtatagtggtggtttgcagtgctgggaatgaaggatcagagagaaataca |
416 |
Q |
| |
|
||| | ||| ||| ||||||||| ||||||||||| || |||||| || || |||||||||||| ||||||||| || ||||| || ||| |
|
|
| T |
48372355 |
cttgaaaaccgacgtgattgcaattggagcgttccatgccatggagcacggcatcgtggtggtttgctccgctgggaattctggtccagagctaagtact |
48372454 |
T |
|
| Q |
417 |
gttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaagg |
516 |
Q |
| |
|
||| |||||||||| |||||||| || || ||||| ||||||||||| || ||||| ||||||||||| |||| ||||||| |||||||||| |||||| |
|
|
| T |
48372455 |
gttgttaatgatgcaccttggatattaacggttgctgccaccactattgaccgtgactttcagtccaatgttgtcttgggtaataacaaagttgtcaagg |
48372554 |
T |
|
| Q |
517 |
taca |
520 |
Q |
| |
|
|||| |
|
|
| T |
48372555 |
taca |
48372558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 812 - 1070
Target Start/End: Original strand, 48373873 - 48374134
Alignment:
| Q |
812 |
gtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcatagatgatggttacacaatctatgacaagattaaaatg |
911 |
Q |
| |
|
|||||| |||| ||||||||||| ||| ||||| ||||||| |||||||| || ||||| |||||| || ||| ||| | |||| || |||| | | |
|
|
| T |
48373873 |
gtgtcatccaagttcattagataagaaaaaagttgaaggaaatattgtcatctgcgatggggtagatggtgattattcaaccgatgaaaaaattaggacg |
48373972 |
T |
|
| Q |
912 |
gtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattatg---atttcccagcaaccgtggtaagaacaa |
1008 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||| || |||| | ||||| | ||||| | ||||||||||| ||||||||| ||| |
|
|
| T |
48373973 |
gtgcaagaggcgggtggattaggtcttgttcatattactgaccaggatggagctgtggcaaatatttatgcagacttcccagcaacagtggtaagatcaa |
48374072 |
T |
|
| Q |
1009 |
aagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagtttttta |
1070 |
Q |
| |
|
|||||| || |||| ||||| |||||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
48374073 |
aagatgttgtcacactcctcaaatatgtcaattcaacgaggtaagcattttaaaggttttta |
48374134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 76 - 286
Target Start/End: Complemental strand, 26097946 - 26097736
Alignment:
| Q |
76 |
atggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcc |
175 |
Q |
| |
|
|||| ||||| ||||||||||| ||||| || || |||||| | ||||||||||||||||| | || ||| || ||||| || ||||||||||| || || |
|
|
| T |
26097946 |
atgggcatggaacccacacagcgtcaaccgcggcggggaacgtcgtgagtggtgcatcatactttggtcttgcagcaggaacggcaaaaggtggatcccc |
26097847 |
T |
|
| Q |
176 |
tgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcgacgatgccatttatgatggagttgatgta |
275 |
Q |
| |
|
| ||| |||||| ||||||||||||||||| ||| || |||||||||| ||| ||||| || ||||||||||| |||| ||| ||||||||| || |
|
|
| T |
26097846 |
cggatcaaggttgtcaatttacaaagtgtgcaactttggttgctctggctctgccatccttgcggctttcgacgatgcaatttctgacggagttgatata |
26097747 |
T |
|
| Q |
276 |
ctttcactctc |
286 |
Q |
| |
|
|||||| |||| |
|
|
| T |
26097746 |
ctttcagtctc |
26097736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 611 - 717
Target Start/End: Original strand, 48373647 - 48373753
Alignment:
| Q |
611 |
agggtcaagccataaatttcacccctctttcaaaatctccccattatccactggtaaccggcgaggctgtcaagacaactactgcagatttagctgaagc |
710 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| || |||||||| || |||| || || ||| |||||||||||||| || ||| ||||||| |
|
|
| T |
48373647 |
agggtcaagccataaatttctcccctctttcaaaatctgccgattatccattgataactggaaagtctgctaagacaactactgctgacttaactgaagc |
48373746 |
T |
|
| Q |
711 |
aaggtac |
717 |
Q |
| |
|
||||||| |
|
|
| T |
48373747 |
aaggtac |
48373753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 336 - 520
Target Start/End: Complemental strand, 26097686 - 26097502
Alignment:
| Q |
336 |
gcaatcggagcgttccacgcagtggagcgtggtatagtggtggtttgcagtgctgggaatgaaggatcagagagaaatacagttattaatgatgctcctt |
435 |
Q |
| |
|
||||| ||||| ||||| || || ||||| || || |||||| ||||| |||||||||| ||| | ||| || ||||||| ||||||| ||||||| |
|
|
| T |
26097686 |
gcaattggagctttccatgctgtagagcgcggcattgtggtgatttgctctgctgggaattctggaccggagcaaagtacagttgttaatgacgctcctt |
26097587 |
T |
|
| Q |
436 |
ggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaaggtaca |
520 |
Q |
| |
|
|||| | || ||||| ||||| || || |||||||| ||||||||||| |||| ||||||| |||||||||| |||||||||| |
|
|
| T |
26097586 |
ggatactaacggttgctgccactaccattgatcgtgactttcagtccaatgttgtcttgggtaataacaaagttgtcaaggtaca |
26097502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 53321155 - 53321068
Alignment:
| Q |
122 |
gagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctct |
209 |
Q |
| |
|
||||||||||||||| || | ||| || ||||||| ||||||| ||||||||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
53321155 |
gagtggtgcatcatactacggtcttgcaaaagggacatcaaaaggggggtctcctcaatcaaggttggcgatttacaaagtgtgctct |
53321068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 819 - 870
Target Start/End: Complemental strand, 26096577 - 26096526
Alignment:
| Q |
819 |
ccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatg |
870 |
Q |
| |
|
|||| ||||||||| | ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26096577 |
ccaagttcattagacaagaaaaaagtcaaaggaaagattgtcatatgtgatg |
26096526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 413 - 527
Target Start/End: Complemental strand, 53320858 - 53320744
Alignment:
| Q |
413 |
tacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatc |
512 |
Q |
| |
|
||||||| |||||||||||| ||||| || || |||| |||||| || || || |||||||| ||||| ||| |||| ||||||| | |||||| ||| |
|
|
| T |
53320858 |
tacagtttctaatgatgctccctggatattaaccgttggagccacaacaattgaccgtgatctccagtctaatgttgtcttgggtaatggcaaagtgatc |
53320759 |
T |
|
| Q |
513 |
aaggtacaatctata |
527 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
53320758 |
aaggtacaaactata |
53320744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1021 - 1066
Target Start/End: Complemental strand, 53308955 - 53308910
Alignment:
| Q |
1021 |
caatcctccaatatgtcaattcaacaaggtatgcattttaaagttt |
1066 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
53308955 |
caatactccaatatgtcaattcaacaaggtaagcattataaagttt |
53308910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University