View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_low_20 (Length: 518)
Name: NF16378_low_20
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Complemental strand, 53673528 - 53673044
Alignment:
| Q |
18 |
atatatcaggtaaagcaggaaattcacttgactggccaataagatacaaaatagctattggagttgcaaggggactccattatcttcataaatgttgcaa |
117 |
Q |
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| T |
53673528 |
atatatcaggtaaagcaggaaattcacttgactggccaataagatacaaaatagctattggagttgcaaggggactccattatcttcataaatgttgcaa |
53673429 |
T |
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| Q |
118 |
acacagaataattcatcgtgacattaaagcctccaatgttcttcttggtcctgattatgaaccacaggtagatactatagaacagcaagcaatgttctga |
217 |
Q |
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| T |
53673428 |
acacagaataattcatcgtgacattaaagcctccaatgttcttcttggtcctgattatgaaccacaggtagatactatagaacagcaagcaatgttctaa |
53673329 |
T |
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| Q |
218 |
taacattgattgattttataccaaattcaattcacacaactaatagttttaaattattactttttgttgcatatattagattactgattttggactagca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53673328 |
taacattgattgattttataccaaattcaattcacacaactaatagttttaaattattactttttgttgcatatattagattactgattttggactagca |
53673229 |
T |
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| Q |
318 |
aagtggcttcctaacaaatggactcaccatgctgtaatcccagttgagggaacatttggatatttagcaccagaggtctttatgcatggtattgtggatg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53673228 |
aagtggcttcctaacaaatggactcaccatgctgtaatccctgttgagggaacatttggatatttagcaccagaggtctttatgcatggtattgtggatg |
53673129 |
T |
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| Q |
418 |
agaaaactgatatttttgcatttggtgttcttcttcttgagattgtaactggaagaagacctgttgattcatcaaagcaaaacat |
502 |
Q |
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| T |
53673128 |
agaaaactgatatatttgcatttggtgttcttcttcttgagattgtaactggaagaagacctgttgattcatcaaagcaaaacat |
53673044 |
T |
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