View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_low_25 (Length: 482)
Name: NF16378_low_25
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 17 - 473
Target Start/End: Complemental strand, 40097685 - 40097228
Alignment:
| Q |
17 |
gaaacatgcagcattgaataaaagtacaaactttagtaccaaaaaacacaagatatatataacttgaacgtacctgaggagtgctacgaggatagtgaat |
116 |
Q |
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| T |
40097685 |
gaaacatgcagcattgaacaaaagtacaaactttagtaccaaaaaacacaagatatatataacttgaacgtacctgaggagtgctacgaggataatgaat |
40097586 |
T |
|
| Q |
117 |
tgaaccagagaagaggattttatgatggccgttaatgactaacgaggttctgtcgtaggtaacattgccaccatggaccgtgcaaagagacacggttaag |
216 |
Q |
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| T |
40097585 |
tgaaccagagaagaggattttatgatggccgttaatgactaacgaggttctgtcgtaggtaacattggcaccatggaccgtgcaaagagacacggttaag |
40097486 |
T |
|
| Q |
217 |
attagtgcatgtaataaaaaacgccaccactctcccatggttttgatttcaccaac-aaagtaaagaatgtttctgaaactcgttttctttttcaagttt |
315 |
Q |
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| T |
40097485 |
attagtgcatgtaataaaaaacgccaccactctcccatggttttgatttcaccaacaaaagtaaagaatgtttctgaaactcgttttctttttcaagttt |
40097386 |
T |
|
| Q |
316 |
ttgctagagagagattactcactctggctcagtattgtgtctgtgaattgtgattgtaaacaacctttttatattgagttggcggtatagggatttggtt |
415 |
Q |
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| T |
40097385 |
ttgctagagagagataactcactctggctcagttttgtgtctgtgaattgtgattgtaaacaacctttttatattgagttggcggtatagggatttggtt |
40097286 |
T |
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| Q |
416 |
ttgctgctgtagcaaaataccacagtttcaagcagttttcaatcttggccgttcatct |
473 |
Q |
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| T |
40097285 |
ttgctgatgtagcaaaataccacagtttcaagcagttttcaatcttggccgttcatct |
40097228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 473
Target Start/End: Complemental strand, 10739065 - 10739005
Alignment:
| Q |
413 |
gttttgctgctgtagcaaaataccacagtttcaagcagttttcaatcttggccgttcatct |
473 |
Q |
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| T |
10739065 |
gttttgcagctgtagcaaaatatcatggtttcacgcagttttcgatctcggtcgttcatct |
10739005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 22016598 - 22016635
Alignment:
| Q |
88 |
acctgaggagtgctacgaggatagtgaattgaaccaga |
125 |
Q |
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| T |
22016598 |
acctgaggagtgctacgaggataatgaatggaaccaga |
22016635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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