View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_low_26 (Length: 479)

Name: NF16378_low_26
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_low_26
NF16378_low_26
[»] chr8 (4 HSPs)
chr8 (186-260)||(13863801-13863875)
chr8 (163-260)||(22781766-22781864)
chr8 (1-55)||(13863573-13863628)
chr8 (211-260)||(42313947-42313996)
[»] chr4 (5 HSPs)
chr4 (179-260)||(1678430-1678511)
chr4 (1-55)||(52528877-52528931)
chr4 (1-59)||(26720573-26720632)
chr4 (213-260)||(14586853-14586900)
chr4 (186-228)||(52529105-52529147)
[»] chr5 (1 HSPs)
chr5 (181-260)||(30463760-30463838)
[»] chr7 (1 HSPs)
chr7 (189-260)||(13761791-13761861)
[»] chr1 (4 HSPs)
chr1 (1-59)||(45118257-45118316)
chr1 (120-250)||(45118420-45118551)
chr1 (181-253)||(19768677-19768750)
chr1 (189-225)||(39076227-39076263)
[»] scaffold1095 (1 HSPs)
scaffold1095 (185-258)||(524-595)
[»] chr2 (2 HSPs)
chr2 (1-59)||(2985721-2985780)
chr2 (120-250)||(2985484-2985615)
[»] scaffold0036 (1 HSPs)
scaffold0036 (182-260)||(97747-97824)
[»] chr6 (2 HSPs)
chr6 (198-260)||(20910682-20910744)
chr6 (198-260)||(20925130-20925192)
[»] scaffold0005 (1 HSPs)
scaffold0005 (213-260)||(230474-230521)
[»] chr3 (1 HSPs)
chr3 (197-260)||(52126895-52126958)


Alignment Details
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 13863801 - 13863875
Alignment:
Q  186 aatttcaaatttttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggattaga 260  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||| ||| |||||| |||||||||||    
T  13863801 aatttcaaatttttggagccaattttttaggtttagggttatggaattagggtttgtatgtttcctaggattaga 13863875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 22781766 - 22781864
Alignment:
Q  163 ctcataacgaaaaggtg-gattcaaatttcaaatttttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggattaga 260  Q
    ||||||| ||||| ||| ||||||||||| ||||||  |||||||||| |||||| ||| |||| ||||||||||| ||||||||||| ||||||||||    
T  22781766 ctcataatgaaaatgtgagattcaaatttgaaatttcgggagccaattttttaggtttaaggttgtggaattagggtttgcatgtttgttaggattaga 22781864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13863573 - 13863628
Alignment:
Q  1 tgggaaggaaaggtgggttgggaaattgagaagggg-aaaaaatgacaatagagaa 55  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||||||||| |||||    
T  13863573 tgggaaggaaacgtggattgggaaattgagaaggggaaaaaaatgacaattgagaa 13863628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 42313947 - 42313996
Alignment:
Q  211 tttaggattagggttatggaattaggggttgcatgtttgctaggattaga 260  Q
    |||||||||||||||| | |||||||| |||||||||||| |||||||||    
T  42313947 tttaggattagggttaggcaattagggtttgcatgtttgccaggattaga 42313996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 179 - 260
Target Start/End: Original strand, 1678430 - 1678511
Alignment:
Q  179 ggattcaaatttcaaatttttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggattaga 260  Q
    ||||||||||||||||||||  ||||||||| |||||| ||| |||| ||||||||||| ||||||||||||||||||||||    
T  1678430 ggattcaaatttcaaattttgagagccaattttttaggtttaaggttgtggaattagggtttgcatgtttgctaggattaga 1678511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 52528877 - 52528931
Alignment:
Q  1 tgggaaggaaaggtgggttgggaaattgagaaggggaaaaaatgacaatagagaa 55  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  52528877 tgggaaggaaacgtggattgggaaattgagaaggggaaaaaatgacaatagagaa 52528931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 26720632 - 26720573
Alignment:
Q  1 tgggaaggaaaggtgggttgggaaattgagaaggggaa-aaaatgacaatagagaaggat 59  Q
    ||||||||||| |||| ||||||||||||||||||||| |||||||||| | ||||||||    
T  26720632 tgggaaggaaacgtggattgggaaattgagaaggggaaaaaaatgacaacaaagaaggat 26720573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 14586853 - 14586900
Alignment:
Q  213 taggattagggttatggaattaggggttgcatgtttgctaggattaga 260  Q
    |||| ||||||||||| |||||||  ||||||||||||||||||||||    
T  14586853 taggtttagggttatgcaattaggatttgcatgtttgctaggattaga 14586900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 52529105 - 52529147
Alignment:
Q  186 aatttcaaatttttggagccaattatttaggattagggttatg 228  Q
    |||||||||||||||||| ||||| |||||| |||||||||||    
T  52529105 aatttcaaatttttggagtcaattttttaggtttagggttatg 52529147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 181 - 260
Target Start/End: Complemental strand, 30463838 - 30463760
Alignment:
Q  181 attcaaatttcaaatttttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggattaga 260  Q
    |||||||||||||||||  |||||||||| |||||| ||||| || ||||||||||| ||||||||||||||||||||||    
T  30463838 attcaaatttcaaatttg-ggagccaattttttaggtttaggattgtggaattagggtttgcatgtttgctaggattaga 30463760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 13761861 - 13761791
Alignment:
Q  189 ttcaaatttttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggattaga 260  Q
    |||||||||||| ||||| || |||||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  13761861 ttcaaatttttgaagccattt-tttaggattaggtttatgcaattagggtttgcatgtttgctaggattaga 13761791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 45118257 - 45118316
Alignment:
Q  1 tgggaaggaaaggtgggttgggaaattgagaaggggaaaaaa-tgacaatagagaaggat 59  Q
    ||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||    
T  45118257 tgggaaggaaacgtggattgggaaattgagaaggggaaaaaagtgacaatagagaaggat 45118316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 250
Target Start/End: Original strand, 45118420 - 45118551
Alignment:
Q  120 caatgttaggagacagtgtaatataccattgggaattggcgagctcataacgaaaaggtgg-attcaaatttcaaatttttggagcc-aattatttagga 217  Q
    ||||||||| ||| |||| |||  | ||||||||||  || ||||||||| ||||| |||| ||| ||||||||||| ||||||||| || | ||||||     
T  45118420 caatgttagaagatagtggaatgcatcattgggaatacgcaagctcataatgaaaatgtgggatttaaatttcaaatatttggagccaaaatttttaggt 45118519  T
Q  218 ttagggttatggaattaggggttgcatgtttgc 250  Q
    |||||||| |||||||||||   ||||||||||    
T  45118520 ttagggtt-tggaattagggtaagcatgtttgc 45118551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 253
Target Start/End: Complemental strand, 19768750 - 19768677
Alignment:
Q  181 attcaaatttcaaatttttggagcca-attatttaggattagggttatggaattaggggttgcatgtttgctag 253  Q
    |||||||||||||||||||| |||||  || |||||||||||| ||  | |||||||| |||||| ||||||||    
T  19768750 attcaaatttcaaatttttgaagccattttttttaggattaggatttggcaattagggtttgcatatttgctag 19768677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 39076227 - 39076263
Alignment:
Q  189 ttcaaatttttggagccaattatttaggattagggtt 225  Q
    |||||||||||||||||| || |||||||||||||||    
T  39076227 ttcaaatttttggagccatttttttaggattagggtt 39076263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1095 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1095
Description:

Target: scaffold1095; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 524 - 595
Alignment:
Q  185 aaatttcaaatttttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggatta 258  Q
    ||||||||||||||  ||||||||| |||| ||||||||||||  |||||||| ||||||||||||||||||||    
T  524 aaatttcaaatttt--gagccaattttttaagattagggttatacaattagggtttgcatgtttgctaggatta 595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 2985780 - 2985721
Alignment:
Q  1 tgggaaggaaaggtgggttgggaaattgagaaggggaaaaaa-tgacaatagagaaggat 59  Q
    |||||||||||  ||| ||||||||||||||||||||||||| |||||||||||||||||    
T  2985780 tgggaaggaaacatggattgggaaattgagaaggggaaaaaagtgacaatagagaaggat 2985721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 250
Target Start/End: Complemental strand, 2985615 - 2985484
Alignment:
Q  120 caatgttaggagacagtgtaatataccattgggaattggcgagctcataacgaaaaggtgg-attcaaatttcaaatttttggagcc-aattatttagga 217  Q
    ||||||||| ||| |||| |||  | ||||||||||  || ||||||||| ||||| |||| ||| ||||||||||| ||||||||| || | ||||||     
T  2985615 caatgttagaagatagtggaatgcatcattgggaatacgcaagctcataatgaaaatgtgggatttaaatttcaaatatttggagccaaaatttttaggt 2985516  T
Q  218 ttagggttatggaattaggggttgcatgtttgc 250  Q
    |||||||| |||||||||||   ||||||||||    
T  2985515 ttagggtt-tggaattagggtaagcatgtttgc 2985484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 97824 - 97747
Alignment:
Q  182 ttcaaatttcaaatttttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggattaga 260  Q
    ||||||||||||||||| ||  |||||| |||||| ||| ||||||| |||||||| ||||||||||| ||||||||||    
T  97824 ttcaaatttcaaatttt-ggctccaattttttaggtttacggttatgcaattagggtttgcatgtttgttaggattaga 97747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 20910682 - 20910744
Alignment:
Q  198 ttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggattaga 260  Q
    ||||||||| || |||||||||||||||| | ||| | || ||||||||||||||||||||||    
T  20910682 ttggagccatttttttaggattagggttaggcaatgaaggtttgcatgtttgctaggattaga 20910744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 20925130 - 20925192
Alignment:
Q  198 ttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggattaga 260  Q
    ||||||||| || |||||||||||||||| | ||| | || ||||||||||||||||||||||    
T  20925130 ttggagccatttttttaggattagggttaggcaatgaaggtttgcatgtttgctaggattaga 20925192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 230521 - 230474
Alignment:
Q  213 taggattagggttatggaattaggggttgcatgtttgctaggattaga 260  Q
    |||| ||||||||||| |||||||  ||||||||||||||||||||||    
T  230521 taggtttagggttatgcaattaggatttgcatgtttgctaggattaga 230474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 52126958 - 52126895
Alignment:
Q  197 tttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggattaga 260  Q
    |||||||||||  | ||||||||||||||| | ||||||||   ||||||||||||||||||||    
T  52126958 tttggagccaaaaacttaggattagggttaagaaattagggtaagcatgtttgctaggattaga 52126895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University