View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_low_32 (Length: 452)
Name: NF16378_low_32
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_32 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 180 - 435
Target Start/End: Original strand, 42956742 - 42956995
Alignment:
| Q |
180 |
ttcaaggagaccaatagttcagcttccgtgatggtaactcggtaatgcatccagctttatttcccaaataagaatagactcctagagtctctgaagcaca |
279 |
Q |
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| T |
42956742 |
ttcaaggagaccaatagttcagcttccgtgatggtaactcggtaatgcatccagctttatttcccaaataagaatagactcatagagtctctaaagcaca |
42956841 |
T |
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| Q |
280 |
tatcataacccatgattgaattgttgttaaacaaggcacaatcaacattatatttaactactgtgtcagggttgggtccatccacaagactgagatgtac |
379 |
Q |
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| T |
42956842 |
tatcataacccatgattgaattgttgttaaacaaggcacaatcaacattatatttaactactgtgtcagggttgggtccatccacaagac--agatgtac |
42956939 |
T |
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| Q |
380 |
cgcgaattggaagttttgttctttgcatacaactctattcatttaaagcatccttt |
435 |
Q |
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| T |
42956940 |
cgcgaattggaagttttgttctttgcatacaactctattcatttaaagcatccttt |
42956995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 42956613 - 42956746
Alignment:
| Q |
7 |
gtgagatgaaatggcaccacataatttcgattattaatcaagtgacgtttacattgggacataatgtcccctaattcgctatgtggcatatcgggcagag |
106 |
Q |
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| T |
42956613 |
gtgaaatgaaatggcaccacataatttcgattattaatcaagtgacgtttacattgggacataatgtcccctaattcgctatgtggcatatcgggcagag |
42956712 |
T |
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| Q |
107 |
agggcatctgccacaagcttgcaattagtttcaa |
140 |
Q |
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| T |
42956713 |
agggcatctgccacaagcttgcaattagtttcaa |
42956746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 162 - 336
Target Start/End: Complemental strand, 7386201 - 7386026
Alignment:
| Q |
162 |
tatagctactttaatggcttcaaggagaccaatag-ttcagcttccgtgatggtaactcggtaatgcatccagctttatttcccaaataagaatagactc |
260 |
Q |
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||||||| ||| ||||| || ||||| ||||||| |||||||||| | ||||||||| ||||||| ||| || ||||||||||||| ||| ||| | |
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| T |
7386201 |
tatagctgttttgatggcctctaggagtccaatagcttcagcttccatagtggtaactctataatgcaaccaatttgatttcccaaataaaaattgaccc |
7386102 |
T |
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| Q |
261 |
ctagagtctctgaagcacatatcataacccatgattgaattgttgttaaacaaggcacaatcaacattatatttaa |
336 |
Q |
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| T |
7386101 |
attgagtctctaaaacacataccataacccatgagtgaattgttgttaaacaaggcacgatcaacattacatttaa |
7386026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 49508297 - 49508224
Alignment:
| Q |
264 |
gagtctctgaagcacatatcataacccatgattgaattgttgttaaacaaggcacaatcaacattatatttaac |
337 |
Q |
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| T |
49508297 |
gagtctctgaagcataaaccatagcccatgatagagttattgttaaacaacgcgcagtcaacattacatttaac |
49508224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 335
Target Start/End: Complemental strand, 5173274 - 5173177
Alignment:
| Q |
238 |
atttcccaaataagaatagactcctagagtctctgaagcacatatcataacccatgattgaattgttgttaaacaaggcacaatcaacattatattta |
335 |
Q |
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| T |
5173274 |
atttcccaaataaaaattgacccattgaatctctaaaacatataccataacccatgaatgaattgttgttaaacaaggcacagtcaacattacattta |
5173177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 337
Target Start/End: Original strand, 237015 - 237088
Alignment:
| Q |
264 |
gagtctctgaagcacatatcataacccatgattgaattgttgttaaacaaggcacaatcaacattatatttaac |
337 |
Q |
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| T |
237015 |
gagtctctgaagcataaaccatagcccatgatagagttattgttaaacaacgcgcagtcaacattacatttaac |
237088 |
T |
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