View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_low_34 (Length: 424)

Name: NF16378_low_34
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_low_34
NF16378_low_34
[»] chr3 (2 HSPs)
chr3 (1-409)||(38396693-38397101)
chr3 (66-143)||(249344-249421)
[»] chr8 (3 HSPs)
chr8 (1-184)||(34830865-34831048)
chr8 (1-126)||(12811961-12812086)
chr8 (356-405)||(34830643-34830692)
[»] chr7 (2 HSPs)
chr7 (1-174)||(5229947-5230120)
chr7 (18-129)||(28470181-28470292)
[»] chr6 (2 HSPs)
chr6 (1-173)||(5652866-5653038)
chr6 (1-126)||(22611476-22611601)
[»] chr5 (1 HSPs)
chr5 (11-171)||(20543481-20543641)
[»] chr4 (3 HSPs)
chr4 (20-144)||(45671396-45671520)
chr4 (5-132)||(45690263-45690390)
chr4 (41-167)||(42506600-42506726)
[»] chr2 (2 HSPs)
chr2 (66-141)||(5546381-5546456)
chr2 (17-164)||(25524815-25524962)
[»] chr1 (1 HSPs)
chr1 (32-143)||(46039607-46039718)


Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 38396693 - 38397101
Alignment:
Q  1 aagaggaagagtagagttgaagagaattgagaacaagatcaacagacaagttacctttgcaaaacgaagaaatggtcttttgaaaaaagcttatgaactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38396693 aagaggaagagtagagttgaagagaattgagaacaagatcaacagacaagttacctttgcaaaacgaagaaatggtcttttgaaaaaagcttatgaactt 38396792  T
Q  101 tctgttctttgtgatgcagaggttgctctcatcgtcttctccaatagaggaaaactctatgagttttgcagcacttcaaggtataataaatacgtattca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38396793 tctgttctttgtgatgcagaggttgctctcatcgtcttctccaatagaggaaaactctatgagttttgcagcacttcaaggtataataaatacgtattca 38396892  T
Q  201 ttcaaatgagaatgattaataattaagtctaactgaacatatatagttaaagaacgttattaataaacatctctactaaatgcttttgattcttgttaca 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  38396893 ttcaaatgagaatgattaataattaagtctaacttaacatatatagttaaagaacattattaataaacatctctactaaatgcttttgattcttgttaca 38396992  T
Q  301 aggtttgtgtatctattttgttgtttattatatgaaaaaactgaatttctttttccactgtttgagtttttgccttttgtgtgaatgtcttggcgtttat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38396993 aggtttgtgtatctattttgttgtttattatatgaaaaaactgaatttctttttccactgtttgagtttttgccttttgtgtgaatgtcttggcgtttat 38397092  T
Q  401 agaaggttg 409  Q
    |||||||||    
T  38397093 agaaggttg 38397101  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 249421 - 249344
Alignment:
Q  66 gaagaaatggtcttttgaaaaaagcttatgaactttctgttctttgtgatgcagaggttgctctcatcgtcttctcca 143  Q
    |||| ||||| ||| |||| |||||||||||||| || ||| | |||||||| || ||||||||||| ||||||||||    
T  249421 gaaggaatggacttctgaagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctcca 249344  T

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Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 34831048 - 34830865
Alignment:
Q  1 aagaggaagagtagagttgaagagaattgagaacaagatcaacagacaagttacctttgcaaaacgaagaaatggtcttttgaaaaaagcttatgaactt 100  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||| || |||||||||||||||||||||||||||    
T  34831048 aagaggaagagttgagttgaagagaattgagaacaaaatcaacagacaagttaccttcgctaaacgaaggaacggtcttttgaaaaaagcttatgaactt 34830949  T
Q  101 tctgttctttgtgatgcagaggttgctctcatcgtcttctccaatagaggaaaactctatgagttttgcagcacttcaaggtat 184  Q
    ||||||||||||||||| || |||||||| ||| |||||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  34830948 tctgttctttgtgatgctgaagttgctcttatcatcttctccaacagaggaaaactctatgagttttgtagcagttcaaggtat 34830865  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 12812086 - 12811961
Alignment:
Q  1 aagaggaagagtagagttgaagagaattgagaacaagatcaacagacaagttacctttgcaaaacgaagaaatggtcttttgaaaaaagcttatgaactt 100  Q
    |||||||||||| || ||||||||||| |||||||| || ||| | || || || ||  ||||| ||||||||||| |  | || ||||||||||||||     
T  12812086 aagaggaagagttgaattgaagagaatagagaacaaaataaaccggcaggtaactttctcaaaaagaagaaatggtttgctcaagaaagcttatgaactg 12811987  T
Q  101 tctgttctttgtgatgcagaggttgc 126  Q
    |||||||| |||||||| || |||||    
T  12811986 tctgttctctgtgatgctgaagttgc 12811961  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 34830692 - 34830643
Alignment:
Q  356 cactgtttgagtttttgccttttgtgtgaatgtcttggcgtttatagaag 405  Q
    |||||||||||||||| || ||| ||||||||||| ||||||||||||||    
T  34830692 cactgtttgagttttttccgtttctgtgaatgtctcggcgtttatagaag 34830643  T

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Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 5229947 - 5230120
Alignment:
Q  1 aagaggaagagtagagttgaagagaattgagaacaagatcaacagacaagttacctttgcaaaacgaagaaatggtcttttgaaaaaagcttatgaactt 100  Q
    |||||||||||| ||||||||||| || ||||||||||| |||||||||||||| ||||| ||  |||||||||||||| | || |||||||||||||||    
T  5229947 aagaggaagagttgagttgaagaggatagagaacaagataaacagacaagttacatttgctaagagaagaaatggtcttcttaagaaagcttatgaactt 5230046  T
Q  101 tctgttctttgtgatgcagaggttgctctcatcgtcttctccaatagaggaaaactctatgagttttgcagcac 174  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||| | | ||||| || ||||| ||||| |||||    
T  5230047 tctgttctttgtgatgctgaggttgctcttatcatcttctccactcgtggaaagctttatgaattttgtagcac 5230120  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 28470181 - 28470292
Alignment:
Q  18 tgaagagaattgagaacaagatcaacagacaagttacctttgcaaaacgaagaaatggtcttttgaaaaaagcttatgaactttctgttctttgtgatgc 117  Q
    ||||||| || || ||||| |||||| | |||||||| ||  ||||| ||||||||||| |  |||||||||| |||||||| || ||||| ||||||||    
T  28470181 tgaagaggatagaaaacaaaatcaaccggcaagttactttctcaaaaagaagaaatggtttgctgaaaaaagcctatgaactctcagttctatgtgatgc 28470280  T
Q  118 agaggttgctct 129  Q
     ||| |||||||    
T  28470281 tgagattgctct 28470292  T

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Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 5652866 - 5653038
Alignment:
Q  1 aagaggaagagtagagttgaagagaattgagaacaagatcaacagacaagttacctttgcaaaacgaagaaatggtcttttgaaaaaagcttatgaactt 100  Q
    |||||||||||| || ||||| || || ||||| ||||| ||||||||||| || ||||||||  |||||||||| ||| | || |||||||||||| |     
T  5652866 aagaggaagagtggaattgaaaaggatagagaataagataaacagacaagtaacatttgcaaagagaagaaatggacttcttaagaaagcttatgaatta 5652965  T
Q  101 tctgttctttgtgatgcagaggttgctctcatcgtcttctccaatagaggaaaactctatgagttttgcagca 173  Q
    ||||||||||||||||| || |||||||| ||  |||||||||||||||| || || ||||||||||| ||||    
T  5652966 tctgttctttgtgatgctgaagttgctcttattatcttctccaatagaggcaagctttatgagttttgtagca 5653038  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 22611476 - 22611601
Alignment:
Q  1 aagaggaagagtagagttgaagagaattgagaacaagatcaacagacaagttacctttgcaaaacgaagaaatggtcttttgaaaaaagcttatgaactt 100  Q
    |||||||||||||| |||| ||||||| ||||| |||||||| || ||||| || ||  ||||  |||||| |||  | ||||| ||||| | ||| |||    
T  22611476 aagaggaagagtagtgttggagagaatagagaataagatcaataggcaagtaacattctcaaagagaagaagtggattgttgaagaaagcctttgagctt 22611575  T
Q  101 tctgttctttgtgatgcagaggttgc 126  Q
    | |||||| |||||||| || |||||    
T  22611576 tgtgttctatgtgatgctgaagttgc 22611601  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 171
Target Start/End: Complemental strand, 20543641 - 20543481
Alignment:
Q  11 gtagagttgaagagaattgagaacaagatcaacagacaagttacctttgcaaaacgaagaaatggtcttttgaaaaaagcttatgaactttctgttcttt 110  Q
    |||||| | ||||| ||||||||||| || ||  | |||||||| ||||||||  ||||||||||  |  |||| || ||||||||||| ||| | ||||    
T  20543641 gtagagctaaagaggattgagaacaaaataaatcgtcaagttacatttgcaaagagaagaaatggaatgctgaagaaggcttatgaactctctctccttt 20543542  T
Q  111 gtgatgcagaggttgctctcatcgtcttctccaatagaggaaaactctatgagttttgcag 171  Q
    ||||||| ||||||||||||||  | ||||| |   | |||||||||||||||||||||||    
T  20543541 gtgatgctgaggttgctctcattattttctctagccgtggaaaactctatgagttttgcag 20543481  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 45671396 - 45671520
Alignment:
Q  20 aagagaattgagaacaagatcaacagacaagttacctttgcaaaacgaagaaatggtcttttgaaaaaagcttatgaactttctgttctttgtgatgcag 119  Q
    |||||||| ||||||||  | || |||||||| || ||||| ||  ||||||||||| |  | || || |||||||||||||| |||||||||||||| |    
T  45671396 aagagaatagagaacaaagttaatagacaagtcacatttgctaagagaagaaatggtgtactcaagaaggcttatgaactttcagttctttgtgatgctg 45671495  T
Q  120 aggttgctctcatcgtcttctccaa 144  Q
    | |||||||| ||| ||||||||||    
T  45671496 aagttgctcttatcatcttctccaa 45671520  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 45690263 - 45690390
Alignment:
Q  5 ggaagagtagagttgaagagaattgagaacaagatcaacagacaagttacctttgcaaaacgaagaaatggtcttttgaaaaaagcttatgaactttctg 104  Q
    ||||||||  |||||||||| ||||||||||||||||| |||||||| || ||| ||||  ||||   |||| | ||||| |||||  | ||  | ||||    
T  45690263 ggaagagtgcagttgaagaggattgagaacaagatcaatagacaagtcactttttcaaagagaaggtctggtttgttgaagaaagcacaagagatctctg 45690362  T
Q  105 ttctttgtgatgcagaggttgctctcat 132  Q
    ||||||||||||| || |||||||||||    
T  45690363 ttctttgtgatgctgaagttgctctcat 45690390  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 167
Target Start/End: Complemental strand, 42506726 - 42506600
Alignment:
Q  41 aacagacaagttacctttgcaaaacgaagaaatggtcttttgaaaaaagcttatgaactttctgttctttgtgatgcagaggttgctctcatcgtcttct 140  Q
    ||||||||||| || ||  ||||  |||||||||| ||  | ||||| || | ||||||||| || ||||||||||| || || || |||||||||||||    
T  42506726 aacagacaagtaactttctcaaagagaagaaatggactgcttaaaaaggcctttgaactttcagtgctttgtgatgctgaagtcgcactcatcgtcttct 42506627  T
Q  141 ccaatagaggaaaactctatgagtttt 167  Q
    | |  | ||| ||||||||||||||||    
T  42506626 ctaccacagggaaactctatgagtttt 42506600  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 5546381 - 5546456
Alignment:
Q  66 gaagaaatggtcttttgaaaaaagcttatgaactttctgttctttgtgatgcagaggttgctctcatcgtcttctc 141  Q
    ||||||||||| | ||||| ||||| |||||| | |||||||||||||||||||| |||||||| || ||||||||    
T  5546381 gaagaaatggtttgttgaagaaagcatatgaattatctgttctttgtgatgcagaagttgctcttatagtcttctc 5546456  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 25524815 - 25524962
Alignment:
Q  17 ttgaagagaattgagaacaagatcaacagacaagttacctttgcaaaacgaagaaatggtcttttgaaaaaagcttatgaactttctgttctttgtgatg 116  Q
    |||||||  ||||||||||||||||| || ||||| || ||| ||||  |||||  |||| |  | || |||||| ||||  | ||||| ||||||||||    
T  25524815 ttgaagaagattgagaacaagatcaataggcaagtaactttttcaaagagaagatctggtttactcaagaaagctcatgagatctctgtgctttgtgatg 25524914  T
Q  117 cagaggttgctctcatcgtcttctccaatagaggaaaactctatgagt 164  Q
    | || |||||||| || ||||||||||| | |||||| ||||||||||    
T  25524915 ctgaagttgctcttattgtcttctccaacaaaggaaagctctatgagt 25524962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 46039718 - 46039607
Alignment:
Q  32 aacaagatcaacagacaagttacctttgcaaaacgaagaaatggtcttttgaaaaaagcttatgaactttctgttctttgtgatgcagaggttgctctca 131  Q
    ||||||||||| |||||||| || ||| ||||  |||||| |||| | ||||| ||||||| ||||||||||||  | |||||||| || |||||||| |    
T  46039718 aacaagatcaatagacaagtaacattttcaaagagaagaagtggtttgttgaagaaagcttttgaactttctgtgttatgtgatgctgaagttgctctta 46039619  T
Q  132 tcgtcttctcca 143  Q
    || |||||||||    
T  46039618 tcatcttctcca 46039607  T

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