View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_low_35 (Length: 423)

Name: NF16378_low_35
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_low_35
NF16378_low_35
[»] chr2 (67 HSPs)
chr2 (4-423)||(39192477-39192896)
chr2 (4-423)||(39198157-39198576)
chr2 (158-355)||(39222269-39222466)
chr2 (200-355)||(39390502-39390657)
chr2 (204-355)||(39390292-39390443)
chr2 (200-361)||(39221681-39221842)
chr2 (219-353)||(39451731-39451865)
chr2 (286-423)||(39222754-39222891)
chr2 (129-353)||(39222114-39222338)
chr2 (98-307)||(39136774-39136983)
chr2 (129-353)||(39221904-39222128)
chr2 (159-310)||(39390127-39390278)
chr2 (129-318)||(39415728-39415917)
chr2 (4-179)||(39389586-39389761)
chr2 (200-334)||(39415460-39415594)
chr2 (242-344)||(39603204-39603306)
chr2 (210-343)||(39602962-39603095)
chr2 (208-355)||(38793218-38793365)
chr2 (213-348)||(39137300-39137435)
chr2 (208-348)||(39458728-39458868)
chr2 (200-319)||(39389698-39389817)
chr2 (208-418)||(39397891-39398101)
chr2 (157-313)||(39415607-39415763)
chr2 (208-307)||(38792713-38792812)
chr2 (289-423)||(39161714-39161848)
chr2 (289-423)||(39207346-39207480)
chr2 (300-402)||(39215515-39215617)
chr2 (286-423)||(39389174-39389311)
chr2 (40-224)||(39221248-39221432)
chr2 (241-334)||(39222562-39222655)
chr2 (208-272)||(38792575-38792639)
chr2 (211-346)||(39473860-39473995)
chr2 (40-289)||(39390778-39391027)
chr2 (295-402)||(39137760-39137867)
chr2 (200-311)||(39192841-39192952)
chr2 (200-311)||(39198521-39198632)
chr2 (216-326)||(38792973-38793083)
chr2 (305-399)||(39369996-39370090)
chr2 (241-335)||(39458593-39458687)
chr2 (208-277)||(38792454-38792523)
chr2 (208-421)||(39468130-39468343)
chr2 (271-358)||(39221353-39221440)
chr2 (327-402)||(39473467-39473542)
chr2 (200-353)||(39390630-39390783)
chr2 (208-281)||(39451468-39451541)
chr2 (15-149)||(39390456-39390590)
chr2 (200-279)||(39391031-39391110)
chr2 (255-353)||(39221820-39221918)
chr2 (200-302)||(39415996-39416098)
chr2 (201-313)||(39136625-39136737)
chr2 (334-401)||(39414841-39414908)
chr2 (200-298)||(39415112-39415210)
chr2 (301-352)||(44895631-44895682)
chr2 (295-353)||(39137718-39137776)
chr2 (15-61)||(39390334-39390380)
chr2 (95-149)||(39458699-39458753)
chr2 (201-290)||(39137003-39137092)
chr2 (4-61)||(39222241-39222298)
chr2 (95-176)||(39222458-39222539)
chr2 (213-365)||(39398511-39398663)
chr2 (211-319)||(39451219-39451327)
chr2 (268-365)||(39467623-39467720)
chr2 (157-349)||(39467848-39468040)
chr2 (237-317)||(39390792-39390872)
chr2 (210-349)||(39398191-39398330)
chr2 (193-353)||(39415183-39415343)
chr2 (300-360)||(39459135-39459195)
[»] chr7 (4 HSPs)
chr7 (15-348)||(19807052-19807385)
chr7 (201-313)||(19806986-19807098)
chr7 (295-402)||(19807710-19807817)
chr7 (300-353)||(19807673-19807726)
[»] chr5 (7 HSPs)
chr5 (200-362)||(17059214-17059376)
chr5 (4-298)||(33560370-33560664)
chr5 (288-420)||(33560885-33561017)
chr5 (200-344)||(33560314-33560458)
chr5 (210-289)||(33560198-33560277)
chr5 (283-348)||(33560523-33560588)
chr5 (15-51)||(17059281-17059317)
[»] chr6 (1 HSPs)
chr6 (294-421)||(16113176-16113303)
[»] chr3 (1 HSPs)
chr3 (301-364)||(51574951-51575014)


Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 67)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 4 - 423
Target Start/End: Complemental strand, 39192896 - 39192477
Alignment:
Q  4 caaaggagaaggaatttgaaggccgagtgcaggagctggaatctaaaaggaagcatttagtaagcatgaggaaggagctaaaattaacagtgaggccatt 103  Q
    |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| |||||||||||    
T  39192896 caaaagagacggaattggaaggccgagtgcaggagctggaatctaaaaggaagcatatagtaggcatgaggaaggagctaaaataaactgtgaggccatt 39192797  T
Q  104 gataggacaagttaacgaattttactctaaagagaagcaacttgatagccaactgaaggagcttgaatctaaaaagaagctatttgagtgccaagagaag 203  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||    
T  39192796 gataggacaagttaaggaattttactctaaagagaagcaacttgatagccaactgaaggagctggaatctaaaaagaagctatttgaatgccaagtgaag 39192697  T
Q  204 gagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaa 303  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||    
T  39192696 gagtttgagtcaaaagagaagcatcatgaagtccaagtgaaggagcgtgaatcaaaagagagagaattcgaaggccaagtgaaggaacttgaatctagaa 39192597  T
Q  304 agaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttcaaagc 403  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39192596 agaagcattttaaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagc 39192497  T
Q  404 aaaggcgaaggagctcaact 423  Q
    ||||| ||||||||||||||    
T  39192496 aaaggtgaaggagctcaact 39192477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 4 - 423
Target Start/End: Complemental strand, 39198576 - 39198157
Alignment:
Q  4 caaaggagaaggaatttgaaggccgagtgcaggagctggaatctaaaaggaagcatttagtaagcatgaggaaggagctaaaattaacagtgaggccatt 103  Q
    |||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| |||||||||||    
T  39198576 caaaagagacggaattggaaggccgagtgcaggagctggaatctaaaaggaagcatatagtaggcatgaggaaggagctaaaatcaactgtgaggccatt 39198477  T
Q  104 gataggacaagttaacgaattttactctaaagagaagcaacttgatagccaactgaaggagcttgaatctaaaaagaagctatttgagtgccaagagaag 203  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||    
T  39198476 gataggacaagttaaggaattttactctaaagagaagcaacttgatagccaactgaaggagctggaatctaaaaagaagctatttgaatgccaagtgaag 39198377  T
Q  204 gagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaa 303  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||    
T  39198376 gagtttgagtcaaaagagaagcatcatgaagtccaagtgaaggagcgtgaatcaaaagagagagaattcgaaggccaagtgaaggaacttgaatctagaa 39198277  T
Q  304 agaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttcaaagc 403  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39198276 agaagcattttaaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagc 39198177  T
Q  404 aaaggcgaaggagctcaact 423  Q
    ||||| ||||||||||||||    
T  39198176 aaaggtgaaggagctcaact 39198157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 158 - 355
Target Start/End: Original strand, 39222269 - 39222466
Alignment:
Q  158 gaaggagcttgaatctaaaaagaagctatttgagtgccaagagaaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatca 257  Q
    |||| |||| |||||||||| |||||  || ||  |||||  ||||||||||||||| ||||||||||||| ||||| ||| |||||||||||| |||||    
T  39222269 gaagcagctggaatctaaaaggaagcatttcgaaagccaaatgaaggagtttgagtctaaagagaagcaacttgaaggccaagtgaaggagcataaatca 39222368  T
Q  258 aaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaatt 355  Q
    |||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  39222369 aaagagagaggattcgaaggccaactgaaggaactggaatccaaaaagaagcattttgaaaatcaagtggaggagttcaaatcaaaagagaggcaatt 39222466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 200 - 355
Target Start/End: Complemental strand, 39390657 - 39390502
Alignment:
Q  200 gaaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatct 299  Q
    ||||||||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39390657 gaaggagtttgagtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaatcaaaagagagagaatttgaaggccaaatgaaggaactggaatct 39390558  T
Q  300 aaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaatt 355  Q
    |||| ||||||||||||||| |||||||||||| ||||| || |||||| ||||||    
T  39390557 aaaaggaagcattttgaaagccaagtggaggagctcaaaacagaagagaggcaatt 39390502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 204 - 355
Target Start/End: Complemental strand, 39390443 - 39390292
Alignment:
Q  204 gagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaa 303  Q
    ||||||| ||||||||||||||||||||||  ||  ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39390443 gagtttgggtcaaaagagaagcaacatgaaagccgagtgaaggagcatggatcaaaagagagagaatttgaaggccaaatgaaggaactggaatctaaaa 39390344  T
Q  304 agaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaatt 355  Q
     ||||||||||||||| |||||||||||| ||||| |||||| |||||||||    
T  39390343 ggaagcattttgaaagccaagtggaggagctcaaaacaaaagtgaagcaatt 39390292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 200 - 361
Target Start/End: Original strand, 39221681 - 39221842
Alignment:
Q  200 gaaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatct 299  Q
    ||||||||||||||||||||||||||||||||||| |  |||||||||||||| |||||||||||||||||||||||||||| |||||||  |||||||     
T  39221681 gaaggagtttgagtcaaaagagaagcaacatgaaggctgggtgaaggagcatggatcaaaagagagagaatttgaaggccaaatgaaggatttggaatca 39221780  T
Q  300 aaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaagg 361  Q
      || ||||||||||||||| |||||||| ||| |||| |||||||||| |||||| |||||    
T  39221781 ggaaggaagcattttgaaagccaagtggacgagctcaagtcaaaagagaggcaatttgaagg 39221842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 219 - 353
Target Start/End: Original strand, 39451731 - 39451865
Alignment:
Q  219 gagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaagcattttgaaa 318  Q
    |||| ||||||||| | || ||||| ||||||||||||||||| |||||||||||||||| || ||||||| ||||||||||||||||||||||||||||    
T  39451731 gagaggcaacatgagggccgggtgatggagcatgaatcaaaagtgagagaatttgaaggcaaagtgaaggatctggaatctaaaaagaagcattttgaaa 39451830  T
Q  319 gtcaagtggaggagttcaaatcaaaagagaagcaa 353  Q
    | |||||||||||| ||||||||||||||| ||||    
T  39451831 gccaagtggaggagctcaaatcaaaagagaggcaa 39451865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 286 - 423
Target Start/End: Original strand, 39222754 - 39222891
Alignment:
Q  286 aggaactggaatctaaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagttaaa 385  Q
    ||||||| ||||| |||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||| |||| |||||||| | ||||||||| | |    
T  39222754 aggaactcgaatcaaaaaagaagcatttcgaaagccaagtcgaggagtttaaatcaaaagagaagcaatttgaagaacgatggaataaacttgagtcaga 39222853  T
Q  386 agagaataagttcaaagcaaaggcgaaggagctcaact 423  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  39222854 agagaataagttcaaagcaaaggtgaaggagctcaact 39222891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 129 - 353
Target Start/End: Original strand, 39222114 - 39222338
Alignment:
Q  129 tctaaagagaagcaacttgatagccaactgaaggagcttgaatctaaaaagaagctatttgagtgccaagagaaggagtttgagtcaaaagagaagcaac 228  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||  |||||| |||||||||  |||||||||| || ||||    
T  39222114 tctaaagagaagcaacttgatagccaagtgaaggagctggaatctaaaaagaagctgtttgaaagccaagtgaaggagttaaagtcaaaagataaccaac 39222213  T
Q  229 atgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaagcattttgaaagtcaagtgga 328  Q
     || || |||  ||| | ||  | ||||||||||||| ||||||||||||||   |||| | ||||||||||||| ||||||||| ||||| ||| || |    
T  39222214 ttgtaggccaattgaggaagtttaaatcaaaagagagggaatttgaaggccaggcgaagcagctggaatctaaaaggaagcatttcgaaagccaaatgaa 39222313  T
Q  329 ggagttcaaatcaaaagagaagcaa 353  Q
    ||||||  | || ||||||||||||    
T  39222314 ggagtttgagtctaaagagaagcaa 39222338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 98 - 307
Target Start/End: Original strand, 39136774 - 39136983
Alignment:
Q  98 gccattgataggacaagttaacgaattttactctaaagagaagcaacttgatagccaactgaaggagcttgaatctaaaaagaagctatttgagtgccaa 197  Q
    |||||||| ||||||| |||| ||| ||  ||||||||||||||||||  || ||||| |||||||||| |||||||||||||| |  ||||||  || |    
T  39136774 gccattgaaaggacaaattaaggaacttgcctctaaagagaagcaactgaatggccaagtgaaggagctggaatctaaaaagaaccagtttgagaaccga 39136873  T
Q  198 gagaaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaat 297  Q
       |||||| ||||||||||||||||||| ||||||| || |||||||||||||| |||||||||||||||||||||| ||||| ||| ||| | | |||    
T  39136874 atcaaggagcttgagtcaaaagagaagcagcatgaaggccgggtgaaggagcatgcatcaaaagagagagaatttgaaagccaagtgatggagcagcaat 39136973  T
Q  298 ctaaaaagaa 307  Q
     |||||||||    
T  39136974 ttaaaaagaa 39136983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 129 - 353
Target Start/End: Original strand, 39221904 - 39222128
Alignment:
Q  129 tctaaagagaagcaacttgatagccaactgaaggagcttgaatctaaaaagaagctatttgagtgccaagagaaggagtttgagtcaaaagagaagcaac 228  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||  |||||| |||||||||  |||||||||| || ||||    
T  39221904 tctaaagagaagcaacttgatagccaagtgaaggagctggaatctaaaaagaagctgtttgaaagccaagtgaaggagttaaagtcaaaagataaccaac 39222003  T
Q  229 atgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaagcattttgaaagtcaagtgga 328  Q
     || || |||  ||| | ||  | |||||||||||||  |||||||||||||   |||| | ||||||||||||| ||||||||| ||||| ||| || |    
T  39222004 ttgtaggccaattgaggaagtttaaatcaaaagagaggcaatttgaaggccaggcgaagcagctggaatctaaaaggaagcatttcgaaagccaaatgaa 39222103  T
Q  329 ggagttcaaatcaaaagagaagcaa 353  Q
    ||||||  | || ||||||||||||    
T  39222104 ggagtttgagtctaaagagaagcaa 39222128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 159 - 310
Target Start/End: Complemental strand, 39390278 - 39390127
Alignment:
Q  159 aaggagcttgaatctaaaaagaagctatttgagtgccaagagaaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaa 258  Q
    ||||| ||||| |||| | ||| || |||||| ||||  | |||||| |||||||||||||||||||||||||||  ||  ||||||||||||||||| |    
T  39390278 aaggaacttgagtctagagagatgcaatttgattgccgtgtgaaggattttgagtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaatcca 39390179  T
Q  259 aagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaagca 310  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  39390178 aagagagagattttgaaggccaaatgaaggaactggaatctaaaaagaagca 39390127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 129 - 318
Target Start/End: Complemental strand, 39415917 - 39415728
Alignment:
Q  129 tctaaagagaagcaacttgatagccaactgaaggagcttgaatctaaaaagaagctatttgagtgccaagagaaggagtttgagtcaaaagagaagcaac 228  Q
    ||||||||||||||||| ||| ||||| | ||||| || ||||||||||||||||  |||||   || |   |||||| |||| |||||||||||||| |    
T  39415917 tctaaagagaagcaactcgatggccaagtaaaggaactggaatctaaaaagaagcagtttgaaaaccgaatcaaggagcttgaatcaaaagagaagcagc 39415818  T
Q  229 atgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaagcattttgaaa 318  Q
    |||||| || |||||| ||||||| |||||||||||||||||||||||||||  ||||||| ||| |||||||||||||||  |||||||    
T  39415817 atgaaggccgggtgaatgagcatgcatcaaaagagagagaatttgaaggccaggtgaaggagctgaaatctaaaaagaagctgtttgaaa 39415728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 179
Target Start/End: Complemental strand, 39389761 - 39389586
Alignment:
Q  4 caaaggagaaggaatttgaaggccgagtgcaggagctggaatctaaaaggaagcatttagtaagcatgaggaaggagctaaaattaacagtgaggccatt 103  Q
    |||||||||||||||||||||| | || | |||||||||||||||||| ||||||||| | |||||||| |  |||||| |||| || | |||||| |||    
T  39389761 caaaggagaaggaatttgaaggtcaagcgaaggagctggaatctaaaaagaagcatttcgaaagcatgatggtggagctcaaatcaaaattgaggctatt 39389662  T
Q  104 gataggacaagttaacgaattttactctaaagagaagcaacttgatagccaactgaaggagcttgaatctaaaaag 179  Q
    || || |||| || | |||||| |||| |||||||||||||||||| ||||| |||||||| | ||||||||||||    
T  39389661 gaaagtacaatttcaggaatttgactccaaagagaagcaacttgatggccaagtgaaggaggtggaatctaaaaag 39389586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 200 - 334
Target Start/End: Complemental strand, 39415594 - 39415460
Alignment:
Q  200 gaaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatct 299  Q
    ||||||| ||||| |||||||||||||||||||||  || |||||||||  |||||||||||||||||||||| || ||||| ||| ||| |||||||||    
T  39415594 gaaggagcttgaggcaaaagagaagcaacatgaaggtcaagtgaaggagtgtgaatcaaaagagagagaatttaaaagccaagtgagggagctggaatct 39415495  T
Q  300 aaaaagaagcattttgaaagtcaagtggaggagtt 334  Q
    ||||||||||| |||||||| |||||  |||||||    
T  39415494 aaaaagaagcaatttgaaagacaagtaaaggagtt 39415460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 242 - 344
Target Start/End: Original strand, 39603204 - 39603306
Alignment:
Q  242 gaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaagcattttgaaagtcaagtggaggagttcaaatca 341  Q
    ||||||||||||||||||||||||||||||||||   |||  |||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  39603204 gaaggagcatgaatcaaaagagagagaatttgaaattcaagcgaaggagctggaatctaaaaagaagcattttgaaagccaagtggaggagttcacatca 39603303  T
Q  342 aaa 344  Q
    |||    
T  39603304 aaa 39603306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 210 - 343
Target Start/End: Original strand, 39602962 - 39603095
Alignment:
Q  210 gagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaagc 309  Q
    |||||| |||||||| ||||||||   | | |||||||||||||||||||||| ||||| |||||||||||| ||| ||| |||||||||||||||||||    
T  39602962 gagtcagaagagaagaaacatgaaagtcggttgaaggagcatgaatcaaaagaaagagagtttgaaggccaagtgacggagctggaatctaaaaagaagc 39603061  T
Q  310 attttgaaagtcaagtggaggagttcaaatcaaa 343  Q
    |||||||||| || ||||||||| ||| ||||||    
T  39603062 attttgaaagccatgtggaggagctcacatcaaa 39603095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 208 - 355
Target Start/End: Original strand, 38793218 - 38793365
Alignment:
Q  208 ttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaa 307  Q
    |||||| ||||||||||||||||||||  | ||||||||||||||||| |||||  ||||||||||||||  || || |||| ||||| ||||||||||     
T  38793218 ttgagttaaaagagaagcaacatgaaggtcgggtgaaggagcatgaattaaaagctagagaatttgaaggtaaagtggaggagctggagtctaaaaagat 38793317  T
Q  308 gcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaatt 355  Q
    |||||||||||| || || |||||| ||||||| ||||||| ||||||    
T  38793318 gcattttgaaagccaggtagaggagctcaaatccaaagagatgcaatt 38793365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 213 - 348
Target Start/End: Original strand, 39137300 - 39137435
Alignment:
Q  213 tcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaagcatt 312  Q
    ||||||||||| |||||||||| || ||||| ||||||||||||||||| ||||||||||||||   || ||| ||| || |||||||||| |||||| |    
T  39137300 tcaaaagagaaacaacatgaaggccgggtgatggagcatgaatcaaaagtgagagaatttgaagttaaaatgatggatctagaatctaaaatgaagcagt 39137399  T
Q  313 ttgaaagtcaagtggaggagttcaaatcaaaagaga 348  Q
    ||||||| |||||||||||| | |||||||||||||    
T  39137400 ttgaaagccaagtggaggagcttaaatcaaaagaga 39137435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 208 - 348
Target Start/End: Original strand, 39458728 - 39458868
Alignment:
Q  208 ttgagtcaaaagagaagcaacatgaagtcc-aggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaaga 306  Q
    ||||||| ||||||||||||| ||| | || ||| |||| | |||||||||||| |||||||||| ||||||||  ||||||| || |||||||||||||    
T  39458728 ttgagtctaaagagaagcaacttgatggccgaggggaagta-catgaatcaaaaaagagagaattcgaaggccatgtgaaggagctcgaatctaaaaaga 39458826  T
Q  307 agcattttgaaagtcaagtggaggagttcaaatcaaaagaga 348  Q
    |   |||||||||||||||||||||| |||||||||||||||    
T  39458827 attgttttgaaagtcaagtggaggagctcaaatcaaaagaga 39458868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 39389817 - 39389698
Alignment:
Q  200 gaaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatct 299  Q
    ||||||| |||||||||||| |||||||| ||||| |||  || |||||||||||||||| ||||  ||||||||||| |||  |||||| |||||||||    
T  39389817 gaaggagcttgagtcaaaagggaagcaacttgaagaccaattgcaggagcatgaatcaaaggagaaggaatttgaaggtcaagcgaaggagctggaatct 39389718  T
Q  300 aaaaagaagcattttgaaag 319  Q
    |||||||||||||| |||||    
T  39389717 aaaaagaagcatttcgaaag 39389698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 208 - 418
Target Start/End: Complemental strand, 39398101 - 39397891
Alignment:
Q  208 ttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaa 307  Q
    |||| ||||| |||||||||||||||| ||  ||||||||||||||||  ||||| | |||| | ||||| | | | ||||| || ||||   |||| ||    
T  39398101 ttgattcaaatgagaagcaacatgaagcccgagtgaaggagcatgaattgaaagaaaaagaactcgaaggtcgagttaaggagctcgaattacaaaataa 39398002  T
Q  308 gcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttcaaagcaaag 407  Q
    ||| |||||||| ||||| ||||| |||||||||||||| |||||| | |||| ||| ||||   ||||||||| |||||||||| ||||||||| ||||    
T  39398001 gcactttgaaagccaagttgaggatttcaaatcaaaagataagcaaattgaagaacggtggaaaaaacttgagtcaaaagagaatcagttcaaagtaaag 39397902  T
Q  408 gcgaaggagct 418  Q
    | | |||||||    
T  39397901 gtgcaggagct 39397891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 157 - 313
Target Start/End: Complemental strand, 39415763 - 39415607
Alignment:
Q  157 tgaaggagcttgaatctaaaaagaagctatttgagtgccaagagaaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatc 256  Q
    ||||||||||  |||||||||||||||| |||||   |||||  |||||||| |||||||||||  ||||||  | || |||  ||||||||  | ||||    
T  39415763 tgaaggagctgaaatctaaaaagaagctgtttgaaatccaagtcaaggagttagagtcaaaagaacagcaactcgtagaccaaatgaaggagtttaaatc 39415664  T
Q  257 aaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaagcattt 313  Q
    ||||||||| ||||||||||||||| |||||||||||| ||| ||| ||||||||||    
T  39415663 aaaagagagggaatttgaaggccaaatgaaggaactggcatcaaaacagaagcattt 39415607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 38792713 - 38792812
Alignment:
Q  208 ttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaa 307  Q
    ||||||| ||||| |||||| |||||| || |||||||||||| |||||||||||||||||||||||||| ||| ||||||| | |||||||||| ||||    
T  38792713 ttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggaccaggaatctaaacagaa 38792812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 423
Target Start/End: Original strand, 39161714 - 39161848
Alignment:
Q  289 aactggaatctaaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagttaaaaga 388  Q
    |||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||||||| |||| ||||| |||||||| |||| |||||| |||   |||||    
T  39161714 aactcgaatcaaaaaataagcattttgaaagacaagttgaggacttcaaatcaaaacagaaacaatttgaaggacggtggaatgaactggagacgaaaga 39161813  T
Q  389 gaataagttcaaagcaaaggcgaaggagctcaact 423  Q
    | ||||| |||||| ||| | ||||||||||||||    
T  39161814 gtataagctcaaagtaaatgagaaggagctcaact 39161848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 423
Target Start/End: Complemental strand, 39207480 - 39207346
Alignment:
Q  289 aactggaatctaaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagttaaaaga 388  Q
    |||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||||||| |||| ||||| |||||||| |||| |||||| |||   |||||    
T  39207480 aactcgaatcaaaaaataagcattttgaaagacaagttgaggacttcaaatcaaaacagaaacaatttgaaggacggtggaatgaactggagacgaaaga 39207381  T
Q  389 gaataagttcaaagcaaaggcgaaggagctcaact 423  Q
    | ||||| |||||| ||| | ||||||||||||||    
T  39207380 gtataagctcaaagtaaatgagaaggagctcaact 39207346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 300 - 402
Target Start/End: Original strand, 39215515 - 39215617
Alignment:
Q  300 aaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttca 399  Q
    ||||||||||| |||||||| ||||| |||   ||  ||||||||||||||||||| |||||||| ||||  ||||||||||||||||||||||||||||    
T  39215515 aaaaagaagcaatttgaaagacaagttgagagctttgaatcaaaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttca 39215614  T
Q  400 aag 402  Q
    |||    
T  39215615 aag 39215617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 286 - 423
Target Start/End: Complemental strand, 39389311 - 39389174
Alignment:
Q  286 aggaactggaatctaaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagttaaa 385  Q
    ||||||| |||||  ||||| |||||||  |||| ||||| ||||| ||||||||||||||| ||| |||  || |||||||||  ||||| ||||| ||    
T  39389311 aggaactcgaatcacaaaaggagcatttgaaaagccaagttgaggacttcaaatcaaaagagcagcgatttaaaagacgatggaacgaactggagttgaa 39389212  T
Q  386 agagaataagttcaaagcaaaggcgaaggagctcaact 423  Q
    |||| |||||||||||| ||||| ||||||||||||||    
T  39389211 agagtataagttcaaagtaaaggtgaaggagctcaact 39389174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 224
Target Start/End: Original strand, 39221248 - 39221432
Alignment:
Q  40 tggaatctaaaaggaagcatttagtaagcatgaggaaggagctaaaattaacagtgaggccattgataggacaagttaacgaattttactctaaagagaa 139  Q
    |||||||||||| ||||||||| | |||||||| | ||||||| |||| ||   ||||  |||||| |||||| ||| | ||| || |||| ||||||||    
T  39221248 tggaatctaaaaagaagcatttcgaaagcatgatggaggagctcaaatcaagcatgagttcattgaaaggacaggttgaggaacttgactccaaagagaa 39221347  T
Q  140 gcaacttgatagccaactgaaggagcttgaatctaaaaagaagctatttgagtgccaagagaaggagtttgagtcaaaagagaag 224  Q
    |||||||||| ||||| |||||||||| |||||| ||||||| |  |||||  | || | |||||||||||| |||||| |||||    
T  39221348 gcaacttgatggccaagtgaaggagctggaatctcaaaagaatcactttgaaagtcaggtgaaggagtttgaatcaaaaaagaag 39221432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 39222562 - 39222655
Alignment:
Q  241 tgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaagcattttgaaagtcaagtggaggagtt 334  Q
    |||||||||||||||||||||||||||||||||||   ||| ||||||| ||| ||||||||||||||||  ||||||| |||||  |||||||    
T  39222562 tgaaggagcatgaatcaaaagagagagaatttgaaattcaagtgaaggagctgcaatctaaaaagaagcaggttgaaagccaagttaaggagtt 39222655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 38792575 - 38792639
Alignment:
Q  208 ttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaattt 272  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||    
T  38792575 ttgagtcgaaagagaagcaacatgaaggccaggtggaggagcatgaatcaaaaaagagagaattt 38792639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 211 - 346
Target Start/End: Complemental strand, 39473995 - 39473860
Alignment:
Q  211 agtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaagca 310  Q
    |||||||||||||||| | ||| | ||  ||| |||||||| |||||||| |||||||||||||| ||||  ||||||  || ||||||||||||||| |    
T  39473995 agtcaaaagagaagcagcttgatggccgagtggaggagcataaatcaaaacagagagaatttgaaagccaggtgaaggggctagaatctaaaaagaagaa 39473896  T
Q  311 ttttgaaagtcaagtggaggagttcaaatcaaaaga 346  Q
    ||| ||||  |||||||||||  |||||||| ||||    
T  39473895 tttagaaatgcaagtggaggatctcaaatcagaaga 39473860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 289
Target Start/End: Complemental strand, 39391027 - 39390778
Alignment:
Q  40 tggaatctaaaaggaagcatttagtaagcatgaggaaggagctaaaattaacagtgaggccattgataggacaagttaacgaattttactctaaagagaa 139  Q
    |||||||||||| ||||||||| | | |||||| | ||||||| |||| || | ||||| | |||| || ||||||| | ||| || |||||||||||||    
T  39391027 tggaatctaaaaagaagcatttcgaaggcatgatggaggagctcaaatcaagaatgaggtctttgaaagaacaagttgaggaacttgactctaaagagaa 39390928  T
Q  140 gcaacttgatagccaactgaaggagcttgaatctaaaaagaagcta-tttgagtgccaagagaaggagtttgagtcaaaagagaagcaacatgaagtcca 238  Q
    ||||||||||   ||| | || ||||| |||||||||||| | ||| |||||    || | |||||||||||||||||||||||  |||| ||||| ||     
T  39390927 gcaacttgatcatcaaattaaagagctagaatctaaaaagga-ctactttgaaaaacaggtgaaggagtttgagtcaaaagagagtcaacttgaaggccg 39390829  T
Q  239 ggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaagga 289  Q
     ||||||||   |||||||||| |||  ||||||||||   ||||||||||    
T  39390828 agtgaaggaatttgaatcaaaaaagaaggaatttgaagatgaactgaagga 39390778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 295 - 402
Target Start/End: Original strand, 39137760 - 39137867
Alignment:
Q  295 aatctaaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataa 394  Q
    |||| ||| |||||||  ||||||| ||||| ||||| | ||||||||||||||||||| | |||| ||| ||||  ||||| |||| ||||||||||||    
T  39137760 aatcaaaagagaagcaacttgaaagccaagtcgaggattacaaatcaaaagagaagcaaattgaagaacggtggaaagaactcgagtcaaaagagaataa 39137859  T
Q  395 gttcaaag 402  Q
    ||||||||    
T  39137860 gttcaaag 39137867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 39192952 - 39192841
Alignment:
Q  200 gaaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatct 299  Q
    ||||||| |||||||||| |||| |||||||||||  | ||||||| ||  ||||||||||||||  ||||| ||||||| | || |||| |||||||||    
T  39192952 gaaggagcttgagtcaaacgagatgcaacatgaaggtcgggtgaagaagtttgaatcaaaagagacggaattggaaggccgagtgcaggagctggaatct 39192853  T
Q  300 aaaaagaagcat 311  Q
    |||| |||||||    
T  39192852 aaaaggaagcat 39192841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 39198632 - 39198521
Alignment:
Q  200 gaaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatct 299  Q
    ||||||| |||||||||| |||| |||||||||||  | ||||||| ||  ||||||||||||||  ||||| ||||||| | || |||| |||||||||    
T  39198632 gaaggagcttgagtcaaacgagatgcaacatgaaggtcgggtgaagaagtttgaatcaaaagagacggaattggaaggccgagtgcaggagctggaatct 39198533  T
Q  300 aaaaagaagcat 311  Q
    |||| |||||||    
T  39198532 aaaaggaagcat 39198521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 326
Target Start/End: Original strand, 38792973 - 38793083
Alignment:
Q  216 aaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaagcattttg 315  Q
    |||||||| ||| |||||| || | ||||||||||||| |||||  || ||||||||||||| ||| ||||||| || |||||||| |||||||| ||||    
T  38792973 aaagagaaccaaaatgaagaccggatgaaggagcatgactcaaagaagcgagaatttgaaggtcaagtgaaggagctagaatctaagaagaagcactttg 38793072  T
Q  316 aaagtcaagtg 326  Q
    | || ||||||    
T  38793073 acagccaagtg 38793083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 399
Target Start/End: Original strand, 39369996 - 39370090
Alignment:
Q  305 gaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttca 399  Q
    |||||| |||||||  ||||| ||| | |||||||| ||||| |||||||| |||||||| ||||  |||||||||||||||||||| |||||||    
T  39369996 gaagcaatttgaaacccaagtcgagcacttcaaatcgaaagaaaagcaatttgaaggacggtggaaagaacttgagttaaaagagaacaagttca 39370090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 241 - 335
Target Start/End: Original strand, 39458593 - 39458687
Alignment:
Q  241 tgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaagcattttgaaagtcaagtggaggagttc 335  Q
    ||||||||| ||| |||||| ||||||| |||||||  ||  ||||||| ||||||||| ||||||||  ||||||||| |||||||||||||||    
T  39458593 tgaaggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagttc 39458687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 38792454 - 38792523
Alignment:
Q  208 ttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaagg 277  Q
    |||||| |||||||||||| |||||||  | ||||||||||||||||||||||  |||||||||||||||    
T  38792454 ttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaagg 38792523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 421
Target Start/End: Original strand, 39468130 - 39468343
Alignment:
Q  208 ttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaa 307  Q
    |||| ||||||| |||||||||||||| ||  |||||||||||||| | |||||  |  | | | ||||| | | | ||||| || ||||| ||||||||    
T  39468130 ttgattcaaaagtgaagcaacatgaagcccgagtgaaggagcatgacttaaaagcaaaggtactcgaaggtcgagttaaggagctcgaatcaaaaaagaa 39468229  T
Q  308 gcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttcaaagcaaag 407  Q
      ||||||| |||||||| ||||| |||||||||||||| |||||||| || | ||| || |  ||| |  ||| ||||||||||  |||||||| ||||    
T  39468230 atattttgacagtcaagttgaggatttcaaatcaaaagataagcaatttgatgaacggtgtaaagaattgaagtcaaaagagaatcggttcaaagtaaag 39468329  T
Q  408 gcgaaggagctcaa 421  Q
    | ||||||| ||||    
T  39468330 gtgaaggagttcaa 39468343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 358
Target Start/End: Original strand, 39221353 - 39221440
Alignment:
Q  271 ttgaaggccaactgaaggaactggaatctaaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattaga 358  Q
    |||| |||||| ||||||| ||||||||| ||||||| || ||||||||||| ||| |||||||  |||||||| ||||| |||||||    
T  39221353 ttgatggccaagtgaaggagctggaatctcaaaagaatcactttgaaagtcaggtgaaggagtttgaatcaaaaaagaaggaattaga 39221440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 402
Target Start/End: Complemental strand, 39473542 - 39473467
Alignment:
Q  327 gaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttcaaag 402  Q
    ||||| |||||||||| || ||||||||| |||| ||||||||  ||||| |||| ||||||||||||||||||||    
T  39473542 gaggaattcaaatcaatagcgaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaag 39473467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 353
Target Start/End: Complemental strand, 39390783 - 39390630
Alignment:
Q  200 gaaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatct 299  Q
    ||||||||||||||||||||| ||  ||  || || | | || ||||||  ||||||||||||||  ||||||||| ||||| ||| |||  ||  |||     
T  39390783 gaaggagtttgagtcaaaagataacaaatttgtaggcaaagtaaaggagtttgaatcaaaagagaaggaatttgaatgccaaatgatggatttgctatca 39390684  T
Q  300 aaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaa 353  Q
    ||| |||||||||||||||| ||| || |||||||  | |||||||||||||||    
T  39390683 aaacagaagcattttgaaagccaaatgaaggagtttgagtcaaaagagaagcaa 39390630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 39451468 - 39451541
Alignment:
Q  208 ttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaa 281  Q
    |||| ||||| |||||||||| ||||  || | |||||||||||||||||||||| ||||| ||||||||||||    
T  39451468 ttgactcaaatgagaagcaacttgaaagccggttgaaggagcatgaatcaaaagaaagagagtttgaaggccaa 39451541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 39390590 - 39390456
Alignment:
Q  15 gaatttgaaggccgagtgcaggagctggaatctaaaaggaagcatttagtaag-catgaggaaggagctaaaattaacagtgaggccattgataggacaa 113  Q
    ||||||||||||| | || |||| ||||||||||||||||||||||| | ||| || | || ||||||| |||  |  || ||||| ||||| |||||||    
T  39390590 gaatttgaaggccaaatgaaggaactggaatctaaaaggaagcattttgaaagccaagtgg-aggagctcaaaacagaagagaggcaattgaaaggacaa 39390492  T
Q  114 gttaacgaattttactctaaagagaagcaacttgat 149  Q
    ||||| ||| || | ||||||||||||||| |||||    
T  39390491 gttaaggaacttgagtctaaagagaagcaatttgat 39390456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 279
Target Start/End: Complemental strand, 39391110 - 39391031
Alignment:
Q  200 gaaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggcc 279  Q
    ||||||| ||||||| |||||||| |||| ||||| |||  ||||||||||||||| ||| ||||  |||||||||||||    
T  39391110 gaaggagcttgagtccaaagagaaacaacttgaaggccaattgaaggagcatgaattaaaggagaaggaatttgaaggcc 39391031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 353
Target Start/End: Original strand, 39221820 - 39221918
Alignment:
Q  255 tcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaa 353  Q
    |||||||||||  |||||||||||||   |||| | ||||||||||||| ||||||||| ||||| ||| || |||||||  | || ||||||||||||    
T  39221820 tcaaaagagaggcaatttgaaggccaggcgaagcagctggaatctaaaaggaagcatttcgaaagccaaatgaaggagtttgagtctaaagagaagcaa 39221918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 302
Target Start/End: Complemental strand, 39416098 - 39415996
Alignment:
Q  200 gaaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatct 299  Q
    ||||||| ||||||| || |||||||||| || || |||  ||||||||||||||||  |||| | ||||||||||| || | |||| || |||||||||    
T  39416098 gaaggagcttgagtctaatgagaagcaacttggaggccaattgaaggagcatgaatccgaagaaaaagaatttgaagaccgagtgaatgagctggaatct 39415999  T
Q  300 aaa 302  Q
    |||    
T  39415998 aaa 39415996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 313
Target Start/End: Original strand, 39136625 - 39136737
Alignment:
Q  201 aaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatcta 300  Q
    |||||| ||||||| ||||||| ||||| ||||| ||   |||||||||||||||   |||| | ||||||||||||||   |||| || ||||||||||    
T  39136625 aaggagcttgagtcgaaagagaggcaacttgaaggccgattgaaggagcatgaattggaagaaaaagaatttgaaggccggatgaatgagctggaatcta 39136724  T
Q  301 aaaagaagcattt 313  Q
    || ||| ||||||    
T  39136725 aagagaggcattt 39136737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 401
Target Start/End: Complemental strand, 39414908 - 39414841
Alignment:
Q  334 tcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataagttcaaa 401  Q
    |||||||||||||||||||||| |||| ||||||||  |||||  ||  ||| |||||||||||||||    
T  39414908 tcaaatcaaaagagaagcaatttgaagaacgatggaaagaactcaagacaaatgagaataagttcaaa 39414841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 298
Target Start/End: Complemental strand, 39415210 - 39415112
Alignment:
Q  200 gaaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaattt-gaaggccaactgaaggaactggaatc 298  Q
    ||||||| |||||||||||||||||||||||||||  |  ||||||||||  |||||| || ||| || |||| ||| ||||||||||||| || |||||    
T  39415210 gaaggagcttgagtcaaaagagaagcaacatgaaggtcgagtgaaggagctggaatcagaaaaga-agcatttcgaaagccaactgaaggagcttgaatc 39415112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #53
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 352
Target Start/End: Complemental strand, 44895682 - 44895631
Alignment:
Q  301 aaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagca 352  Q
    ||||||||| ||||||||| ||||| ||||  ||||||||||||||||||||    
T  44895682 aaaagaagcgttttgaaagccaagttgaggccttcaaatcaaaagagaagca 44895631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #54
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 39137718 - 39137776
Alignment:
Q  295 aatctaaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaa 353  Q
    |||| ||||||||||| || ||||  ||||| ||||| |||||||||||||||||||||    
T  39137718 aatcaaaaaagaagcaattcgaaaaccaagttgaggatttcaaatcaaaagagaagcaa 39137776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #55
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 39390380 - 39390334
Alignment:
Q  15 gaatttgaaggccgagtgcaggagctggaatctaaaaggaagcattt 61  Q
    ||||||||||||| | || |||| |||||||||||||||||||||||    
T  39390380 gaatttgaaggccaaatgaaggaactggaatctaaaaggaagcattt 39390334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #56
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 39458699 - 39458753
Alignment:
Q  95 gaggccattgataggacaagttaacgaattttactctaaagagaagcaacttgat 149  Q
    ||||| ||||| |||||||||||| ||| || | |||||||||||||||||||||    
T  39458699 gaggcaattgaaaggacaagttaaggaacttgagtctaaagagaagcaacttgat 39458753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 39137003 - 39137092
Alignment:
Q  201 aaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaa 290  Q
    |||| ||| ||||||||||| || |||| || || |||  ||||||||  | ||||||||||||  ||||||||||||||| ||||||||    
T  39137003 aaggcgttagagtcaaaagaaaaccaacttgtagaccaaatgaaggagtttaaatcaaaagagatggaatttgaaggccaaatgaaggaa 39137092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #58
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 39222241 - 39222298
Alignment:
Q  4 caaaggagaaggaatttgaaggccgagtgcaggagctggaatctaaaaggaagcattt 61  Q
    |||| |||| ||||||||||||||  | | || |||||||||||||||||||||||||    
T  39222241 caaaagagagggaatttgaaggccaggcgaagcagctggaatctaaaaggaagcattt 39222298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #59
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 39222458 - 39222539
Alignment:
Q  95 gaggccattgataggacaagttaacgaattttactctaaagagaagcaacttgatagccaactgaaggagcttgaatctaaa 176  Q
    ||||| ||||| |||||| ||||| ||| || | |||||||||||| || ||||| ||| | |||||||| |||||||||||    
T  39222458 gaggcaattgaaaggacaggttaaggaaattgagtctaaagagaagaaatttgatggccgagtgaaggagtttgaatctaaa 39222539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #60
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 365
Target Start/End: Complemental strand, 39398663 - 39398511
Alignment:
Q  213 tcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaag-agagagaatttgaaggccaactgaaggaactggaatctaaaaagaagcat 311  Q
    |||||||||| ||||| |||||||| || ||| |||  | ||||||||  ||||| ||||||||||||||  |||||| || | ||| ||| ||||||||    
T  39398663 tcaaaagagatgcaacttgaagtccgggagaatgagtttaaatcaaaactagaga-aatttgaaggccaagagaaggagcttgtatcaaaacagaagcat 39398565  T
Q  312 tttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacga 365  Q
    |||||||  | | || |||||||  | ||||| |||||||| ||| ||||||||    
T  39398564 tttgaaatccgattgaaggagttagagtcaaaggagaagcacttacaaggacga 39398511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #61
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 319
Target Start/End: Original strand, 39451219 - 39451327
Alignment:
Q  211 agtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaat-ttgaaggccaactgaaggaactggaatctaaaaagaagc 309  Q
    |||||||| ||| ||||| ||||| || |  |||||||  ||||||||||||| |||||  ||||||||||| | ||||| ||||||| ||||||| |||    
T  39451219 agtcaaaaaagatgcaacttgaaggccggaagaaggagtttgaatcaaaagag-gagaaagttgaaggccaaatcaaggagctggaatttaaaaaggagc 39451317  T
Q  310 attttgaaag 319  Q
    | ||||||||    
T  39451318 actttgaaag 39451327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #62
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 365
Target Start/End: Original strand, 39467623 - 39467720
Alignment:
Q  268 aatttgaaggccaactgaaggaactggaatctaaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacga 365  Q
    ||||||||||||||  |||||| || | ||| ||| |||||||||||||||| | | || |||||||  | ||||| ||||| || ||||||||||||    
T  39467623 aatttgaaggccaagagaaggagcttgtatcaaaacagaagcattttgaaagccgattgaaggagttagagtcaaaggagaatcacttagaaggacga 39467720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #63
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 349
Target Start/End: Original strand, 39467848 - 39468040
Alignment:
Q  157 tgaaggagcttgaatctaaaaagaagctatttgagtgccaagagaaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatc 256  Q
    |||||||||||||||| |||||||||| | ||||  | |  |  | |||| | ||||||||||||| ||| | ||||| || |  |||||||  ||||||    
T  39467848 tgaaggagcttgaatcaaaaaagaagcaagttgaaggacgggcaatggagctagagtcaaaagagatgcagcttgaaggccggaagaaggagtttgaatc 39467947  T
Q  257 aaaagagagagaa-tttgaaggccaactgaaggaactggaatctaaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaa 349  Q
    ||||||| ||||| |||||||||||  ||||||| ||||||| ||||||  ||||  || |||| ||| || |||||||  | |||||||||||    
T  39467948 aaaagag-gagaaatttgaaggccagatgaaggagctggaatttaaaaaacagcacattcaaagccaattgaaggagttggagtcaaaagagaa 39468040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #64
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 39390872 - 39390792
Alignment:
Q  237 caggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaagcattttgaa 317  Q
    ||||||||||||  ||| |||||||||||  || ||||||||| | |||||||| | ||||| ||||||||| | ||||||    
T  39390872 caggtgaaggagtttgagtcaaaagagagtcaacttgaaggccgagtgaaggaatttgaatcaaaaaagaaggaatttgaa 39390792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #65
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 349
Target Start/End: Complemental strand, 39398330 - 39398191
Alignment:
Q  210 gagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaa-tttgaaggccaactgaaggaactggaatctaaaaagaag 308  Q
    ||||||||||||| ||||| ||||| || |  |||||||  ||| ||||||||| ||||| |||||||||||  ||||||| | ||||| |||||   ||    
T  39398330 gagtcaaaagagatgcaacttgaaggccggaagaaggagtttgagtcaaaagag-gagaaatttgaaggccagatgaaggagcgggaatttaaaatacag 39398232  T
Q  309 cattttgaaagtcaagtggaggagttcaaatcaaaagagaa 349  Q
    || |||||||| ||| || |||||||  | |||||||||||    
T  39398231 cactttgaaagccaattgaaggagttagagtcaaaagagaa 39398191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #66
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 353
Target Start/End: Complemental strand, 39415343 - 39415183
Alignment:
Q  193 gccaagagaaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaact 292  Q
    |||||| ||| ||| ||||||| ||||  |||||| |||||||||   |||||||||||||||  || ||||||||| || |||| ||| |||| ||  |    
T  39415343 gccaagtgaaagagcttgagtcgaaagcaaagcaagatgaagtccgattgaaggagcatgaattgaacgagagagaacttaaaggtcaagtgaatgattt 39415244  T
Q  293 ggaatctaaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaa 353  Q
    || ||| |||  ||| ||||||||||| | | || ||||| |  | |||||||||||||||    
T  39415243 ggtatcaaaactgaatcattttgaaagccgaatgaaggagcttgagtcaaaagagaagcaa 39415183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #67
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 39459135 - 39459195
Alignment:
Q  300 aaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaag 360  Q
    ||||||||||| |||||||| ||  | ||||| ||||||| ||||||||||||||| ||||    
T  39459135 aaaaagaagcaatttgaaagccagtttgaggacttcaaattaaaagagaagcaatttgaag 39459195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 15 - 348
Target Start/End: Original strand, 19807052 - 19807385
Alignment:
Q  15 gaatttgaaggccgagtgcaggagctggaatctaaaaggaagcatttagtaagcatgaggaaggagctaaaattaacagtgaggccattgataggacaag 114  Q
    |||||||||||||||||| | |||||||||||||||  || ||||||   ||||  |  | ||||||| ||   || | ||| |||||||| |||||||     
T  19807052 gaatttgaaggccgagtgaatgagctggaatctaaagagaggcatttcaaaagcgaggtggaggagctcaatacaaaattgatgccattgaaaggacaac 19807151  T
Q  115 ttaacgaattttactctaaagagaagcaacttgatagccaactgaaggagcttgaatctaaaaagaagctatttgagtgccaagagaaggagtttgagtc 214  Q
    |||| ||  ||  ||||||||||||||||||  || ||||| |||||||||| ||||||||||||| ||  |||||   || |   |||||| |||||||    
T  19807152 ttaaggagcttgcctctaaagagaagcaactcaatggccaagtgaaggagctggaatctaaaaagaggcagtttgaaaaccgaatcaaggagcttgagtc 19807251  T
Q  215 aaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatctaaaaagaagcatttt 314  Q
    |||||||||||| ||||||| || | |||||||||||| |||||||||||||||||||||| ||||| ||| ||| | | |||||||||||||||  |||    
T  19807252 aaaagagaagcagcatgaaggccggatgaaggagcatgcatcaaaagagagagaatttgaaagccaaatgatggagcagcaatctaaaaagaagctgttt 19807351  T
Q  315 gaaagtcaagtggaggagttcaaatcaaaagaga 348  Q
    ||||| |||||||||||| | |||||||||||||    
T  19807352 gaaagccaagtggaggagcttaaatcaaaagaga 19807385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 313
Target Start/End: Original strand, 19806986 - 19807098
Alignment:
Q  201 aaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatcta 300  Q
    |||||| ||||||| ||||||| ||||| ||||| ||   ||||||||||||||||| ||||   |||||||||||||| | |||| || ||||||||||    
T  19806986 aaggagcttgagtcgaaagagaggcaacttgaaggccgattgaaggagcatgaatcagaagaacaagaatttgaaggccgagtgaatgagctggaatcta 19807085  T
Q  301 aaaagaagcattt 313  Q
    || ||| ||||||    
T  19807086 aagagaggcattt 19807098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 402
Target Start/End: Original strand, 19807710 - 19807817
Alignment:
Q  295 aatctaaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaataa 394  Q
    |||| ||| |||||||  ||||||| ||||| ||||| | ||||||||||||||| ||| | |||| | | ||||  ||||| |||| ||||||||||||    
T  19807710 aatcaaaagagaagcaacttgaaagccaagtcgaggaatacaaatcaaaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataa 19807809  T
Q  395 gttcaaag 402  Q
    ||||||||    
T  19807810 gttcaaag 19807817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 19807673 - 19807726
Alignment:
Q  300 aaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaa 353  Q
    ||||||||||| || ||||  ||||| ||||| |||||||||||||||||||||    
T  19807673 aaaaagaagcaattcgaaaaccaagttgaggacttcaaatcaaaagagaagcaa 19807726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 200 - 362
Target Start/End: Original strand, 17059214 - 17059376
Alignment:
Q  200 gaaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatct 299  Q
    ||||||| |||  ||||||||||| ||||||||||  | ||||| ||||||  ||||||||||||| ||||||||||||| | ||||||| |||||||||    
T  17059214 gaaggagcttgcatcaaaagagaaacaacatgaagcactggtgatggagcacaaatcaaaagagagtgaatttgaaggcctagtgaaggagctggaatct 17059313  T
Q  300 aaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaagga 362  Q
    ||||| ||| ||||||| |  |||||||||||| ||||||||||||||| |||||| ||||||    
T  17059314 aaaaaaaaggattttgatatccaagtggaggagctcaaatcaaaagagaggcaattggaagga 17059376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 298
Target Start/End: Original strand, 33560370 - 33560664
Alignment:
Q  4 caaaggagaaggaatttgaaggccgagtgcaggagctggaatctaaaaggaagcatttagtaagcatgaggaaggagctaaaattaacagtgaggccatt 103  Q
    ||||||||||||||||||||||| | ||| ||||| |||||| ||||  ||||||||| | |||||||  | ||||||| |||| || | ||||| | ||    
T  33560370 caaaggagaaggaatttgaaggctgtgtgaaggagatggaatataaagcgaagcatttcgaaagcatggtggaggagctcaaatcaaaattgaggtcgtt 33560469  T
Q  104 gataggacaagttaacgaattttactctaaagagaagcaacttgatagccaactgaaggagcttgaatctaaaaagaagctatttgagtgccaagagaag 203  Q
    || || |||| || | ||| || | ||||||||||||||||||||| | ||  |||||||||| |||||||||||||| |  |||||  | ||||  |||    
T  33560470 gaaagaacaacttcaagaacttgattctaaagagaagcaacttgatggtcaggtgaaggagctggaatctaaaaagaaccactttgaaagacaagttaag 33560569  T
Q  204 gagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatc 298  Q
    |||||||||||||||||||  |||| || || |||  ||||||||  | ||| |||| |||  |||||||||||||||||||||||  |||||||    
T  33560570 gagtttgagtcaaaagagagtcaacttgtaggccaactgaaggagtttaaattaaaaaagaaggaatttgaaggccaactgaaggagttggaatc 33560664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 420
Target Start/End: Original strand, 33560885 - 33561017
Alignment:
Q  288 gaactggaatctaaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagttaaaag 387  Q
    ||||| ||||| ||| |||||||||||| ||| ||||| ||||| |||||||||||| |||| |||||  | | |||||||| |||||| ||||  ||||    
T  33560885 gaactcgaatcaaaagagaagcattttgcaagacaagttgaggacttcaaatcaaaacagaaccaatttcaggtacgatggaatgaactggagtcgaaag 33560984  T
Q  388 agaataagttcaaagcaaaggcgaaggagctca 420  Q
    || | |||||| | | ||||| |||||||||||    
T  33560985 agtacaagttcgatgaaaaggtgaaggagctca 33561017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 344
Target Start/End: Original strand, 33560314 - 33560458
Alignment:
Q  200 gaaggagtttgagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaaggaactggaatct 299  Q
    ||||||| || |||||||||||||||||| ||||| ||   |||| |||||||| ||||| ||||  ||||||||||||    |||||||  |||||| |    
T  33560314 gaaggagcttcagtcaaaagagaagcaacttgaaggccgattgaatgagcatgagtcaaaggagaaggaatttgaaggctgtgtgaaggagatggaatat 33560413  T
Q  300 aaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaa 344  Q
    |||  ||||||||| |||||    ||||||||| |||||||||||    
T  33560414 aaagcgaagcatttcgaaagcatggtggaggagctcaaatcaaaa 33560458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 289
Target Start/End: Original strand, 33560198 - 33560277
Alignment:
Q  210 gagtcaaaagagaagcaacatgaagtccaggtgaaggagcatgaatcaaaagagagagaatttgaaggccaactgaagga 289  Q
    ||||||||||||| ||||||||||| || ||||||||||  ||||||||||||||  || ||||||  |||| |||||||    
T  33560198 gagtcaaaagagatgcaacatgaaggccgggtgaaggagtttgaatcaaaagagaaggattttgaaaaccaaatgaagga 33560277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 348
Target Start/End: Original strand, 33560523 - 33560588
Alignment:
Q  283 tgaaggaactggaatctaaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagaga 348  Q
    ||||||| ||||||||||||||||| || |||||||| |||||  |||||||  | ||||||||||    
T  33560523 tgaaggagctggaatctaaaaagaaccactttgaaagacaagttaaggagtttgagtcaaaagaga 33560588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 17059281 - 17059317
Alignment:
Q  15 gaatttgaaggccgagtgcaggagctggaatctaaaa 51  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  17059281 gaatttgaaggcctagtgaaggagctggaatctaaaa 17059317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 421
Target Start/End: Original strand, 16113176 - 16113303
Alignment:
Q  294 gaatctaaaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagttaaaagagaata 393  Q
    ||||| ||||| |||||||| ||||| ||||| ||| | ||||||||||| || |||||||| |||| ||| ||||  ||||| || | ||||||||||     
T  16113176 gaatcaaaaaataagcatttggaaagccaagttgagtatttcaaatcaaacgataagcaatttgaagaacggtggaaagaactcgaatcaaaagagaatc 16113275  T
Q  394 agttcaaagcaaaggcgaaggagctcaa 421  Q
    ||||||||| ||||| ||||||||||||    
T  16113276 agttcaaagtaaaggagaaggagctcaa 16113303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 364
Target Start/End: Original strand, 51574951 - 51575014
Alignment:
Q  301 aaaagaagcattttgaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacg 364  Q
    ||||||||||||||||||| |||||| ||||  |||||||||||||||| ||||| ||||||||    
T  51574951 aaaagaagcattttgaaagccaagtgaaggaactcaaatcaaaagagaaacaatttgaaggacg 51575014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University