View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_low_37 (Length: 415)

Name: NF16378_low_37
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_low_37
NF16378_low_37
[»] chr8 (9 HSPs)
chr8 (18-409)||(24502491-24502882)
chr8 (137-303)||(28890266-28890432)
chr8 (89-302)||(26576536-26576751)
chr8 (137-291)||(23584889-23585043)
chr8 (136-241)||(24277213-24277317)
chr8 (275-342)||(18789428-18789494)
chr8 (144-291)||(23520950-23521097)
chr8 (137-179)||(25727580-25727622)
chr8 (223-269)||(34062331-34062377)
[»] chr6 (10 HSPs)
chr6 (106-344)||(24575748-24575987)
chr6 (239-344)||(1559175-1559280)
chr6 (144-358)||(13487716-13487929)
chr6 (155-247)||(1558514-1558606)
chr6 (144-300)||(10814751-10814907)
chr6 (135-239)||(11703998-11704102)
chr6 (136-241)||(4097791-4097896)
chr6 (136-231)||(10821101-10821196)
chr6 (144-335)||(4312358-4312548)
chr6 (69-120)||(29031897-29031947)
[»] chr7 (13 HSPs)
chr7 (155-345)||(12733585-12733775)
chr7 (144-294)||(32957577-32957726)
chr7 (239-344)||(15757095-15757200)
chr7 (136-241)||(10646802-10646907)
chr7 (229-342)||(7560936-7561049)
chr7 (155-247)||(15757769-15757861)
chr7 (144-335)||(1782986-1783177)
chr7 (79-197)||(7561052-7561170)
chr7 (213-250)||(32562657-32562694)
chr7 (137-309)||(27707279-27707450)
chr7 (144-241)||(17891381-17891477)
chr7 (275-342)||(10924441-10924507)
chr7 (266-342)||(5265356-5265431)
[»] chr4 (10 HSPs)
chr4 (166-355)||(4746161-4746350)
chr4 (140-293)||(11545187-11545341)
chr4 (137-309)||(21809939-21810111)
chr4 (136-248)||(11449409-11449521)
chr4 (141-335)||(11419689-11419882)
chr4 (204-284)||(23866052-23866132)
chr4 (271-344)||(15365783-15365856)
chr4 (213-274)||(17743607-17743668)
chr4 (140-179)||(47575674-47575713)
chr4 (133-182)||(16404955-16405004)
[»] chr5 (6 HSPs)
chr5 (144-342)||(26335486-26335683)
chr5 (165-302)||(26013725-26013862)
chr5 (106-231)||(12859843-12859969)
chr5 (160-241)||(37336630-37336711)
chr5 (144-294)||(27499785-27499935)
chr5 (213-294)||(24838335-24838416)
[»] chr1 (13 HSPs)
chr1 (84-294)||(30805812-30806024)
chr1 (136-281)||(26898029-26898174)
chr1 (165-294)||(17316369-17316498)
chr1 (136-300)||(33438901-33439068)
chr1 (140-241)||(19003155-19003256)
chr1 (151-302)||(19960231-19960381)
chr1 (144-232)||(18932728-18932816)
chr1 (136-210)||(12397787-12397861)
chr1 (136-241)||(17496669-17496774)
chr1 (133-233)||(17103360-17103460)
chr1 (202-281)||(21721122-21721201)
chr1 (168-241)||(22666269-22666342)
chr1 (213-245)||(34488213-34488245)
[»] chr2 (7 HSPs)
chr2 (145-300)||(42256264-42256419)
chr2 (134-344)||(19877982-19878191)
chr2 (82-197)||(21748583-21748699)
chr2 (156-294)||(16917379-16917518)
chr2 (144-265)||(27765606-27765727)
chr2 (134-179)||(35666153-35666198)
chr2 (158-309)||(16587053-16587204)
[»] chr3 (7 HSPs)
chr3 (140-302)||(14427187-14427349)
chr3 (144-274)||(13291681-13291811)
chr3 (137-274)||(10928932-10929069)
chr3 (171-269)||(17119027-17119125)
chr3 (137-235)||(4514652-4514751)
chr3 (214-286)||(4508179-4508251)
chr3 (147-239)||(4767763-4767855)
[»] scaffold0650 (1 HSPs)
scaffold0650 (137-294)||(5865-6022)
[»] scaffold1551 (1 HSPs)
scaffold1551 (271-344)||(555-628)
[»] scaffold0514 (1 HSPs)
scaffold0514 (204-274)||(7272-7342)
[»] scaffold0329 (1 HSPs)
scaffold0329 (151-281)||(4309-4438)
[»] scaffold1190 (1 HSPs)
scaffold1190 (204-274)||(1298-1368)


Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 24502882 - 24502491
Alignment:
Q  18 tttctatccctttttctcctatatctaccaaacaaagcttcagagtctatatgagagattttggagagtgtcagcgcattaagagtcgtttgagaagctt 117  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||    
T  24502882 tttctatccctttttctcctatatctatcaaacaaagcttcagagtctatttgagagattttggagagtctcggcgcattaagagtcgtttgagaagctt 24502783  T
Q  118 caagcaagaacgtgaaatattgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  24502782 caagcaagaacgtgaaatattgcctaatatggataatgtcgttgatgggacatttgaaattccttttctgcaactagaattttctgttcattccttttgt 24502683  T
Q  218 cattaaagttctttgtttgtttctgcacatgatcataataagacaaattgtattatctgagtctgatagagacaacttcagaagagcacaaagtatgact 317  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24502682 cattaaagttctttgtttgtttctgcacatgattagaataagacaaatcatattatctgagtctgatagagacaacttcagaagagcacaaagtatgact 24502583  T
Q  318 tggattctaggtccctcagagtcttctatctctcagagtctagtgcaattctttagcttttcttgtttccaaatgctcttatatatattctt 409  Q
    ||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24502582 tggattctaggtccctcagagtcttctatctctcacagtcatgtgcaattctttagcttttcttgtttccaaatgctcttatatgtattctt 24502491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 137 - 303
Target Start/End: Original strand, 28890266 - 28890432
Alignment:
Q  137 ttgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttg 236  Q
    |||||| |||||||||||||||||||| ||||||| ||||||| ||| || ||| | |||||||||||||||||  |||||  || ||||||  ||||||    
T  28890266 ttgcctgatatggataatgtcgttgattagacattcgaaattcctttgctaaaattggaattttctgttcattctctttgttcttgaagttccatgtttg 28890365  T
Q  237 tttctgcacatgatcataataagacaaattgtattatctgagtctgatagagacaacttcagaagag 303  Q
    ||||| |||||| ||| || | |||||||||||| ||| || | |||||||||||||| || |||||    
T  28890366 tttctacacatggtcagaagaggacaaattgtatgatcagactttgatagagacaactacataagag 28890432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 89 - 302
Target Start/End: Original strand, 26576536 - 26576751
Alignment:
Q  89 cagcgcattaagagtcgtttgagaagcttcaag-caagaacgt-gaaatatt-gcctaatatggataatgtcgttgatgagacatttgaaattctttttc 185  Q
    ||||||||||||||||||| ||||||||||||  |||| |||| |  ||||| |||| ||||  ||||||||||||||| || ||||||||||| |||      
T  26576536 cagcgcattaagagtcgtt-gagaagcttcaaatcaaggacgttggtatatttgcctgatataaataatgtcgttgatgggatatttgaaattcctttgt 26576634  T
Q  186 tgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgcacatgatcataataagacaaattgtattatctgagtctgata 285  Q
    || |||| ||||| | ||||||||| ||||||| || ||||||||||||||| |||||||  ||| | || |||| |||||||| |||  ||||||||||    
T  26576635 tgcaactggaattatttgttcattctttttgtctttgaagttctttgtttgtatctgcacgagattagaagaagaaaaattgtactattggagtctgata 26576734  T
Q  286 gagacaacttcagaaga 302  Q
    |||||| || |||||||    
T  26576735 gagacagctacagaaga 26576751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 291
Target Start/End: Complemental strand, 23585043 - 23584889
Alignment:
Q  137 ttgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttg 236  Q
    ||||||||| |||||||| | ||||||  |||||||||||||  |||  |||||||||||   || ||||||||  |||||| || ||||||||||||||    
T  23585043 ttgcctaatttggataattttgttgattggacatttgaaatttctttgttgaaactagaacaatccgttcattctctttgtccttgaagttctttgtttg 23584944  T
Q  237 tttctgcacatgatcataataagacaaattgtattatctgagtctgatagagaca 291  Q
    ||| | ||| || ||| ||||||||||| |||| |||| || | |||||||||||    
T  23584943 tttatacacgtggtcagaataagacaaagtgtactatcagactttgatagagaca 23584889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 241
Target Start/End: Complemental strand, 24277317 - 24277213
Alignment:
Q  136 attgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgttt 235  Q
    ||||||| ||||||||| ||||||||||  |||||||||||||| |||  |||||||  |||| || ||||||||  |||||| || ||||| |||||||    
T  24277317 attgcctgatatggata-tgtcgttgatttgacatttgaaattcctttattgaaactgaaattatccgttcattctctttgtccttgaagttatttgttt 24277219  T
Q  236 gtttct 241  Q
    | ||||    
T  24277218 gcttct 24277213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 342
Target Start/End: Original strand, 18789428 - 18789494
Alignment:
Q  275 tgagtctgatagagacaacttcagaagagcacaaagtatgacttggattctaggtccctcagagtctt 342  Q
    ||||||||||||||||||||||||||||  ||||||| |||| ||  || | ||||||||||||||||    
T  18789428 tgagtctgatagagacaacttcagaagaagacaaagt-tgacatgacttatgggtccctcagagtctt 18789494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 291
Target Start/End: Complemental strand, 23521097 - 23520950
Alignment:
Q  144 atatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgc 243  Q
    ||||| |||||||||||||| ||||||||||||||  ||| ||| |||  ||||| ||  |||||||  |||||| || ||||| ||||| ||||| | |    
T  23521097 atatgaataatgtcgttgattagacatttgaaattactttgctgcaacatgaattatccattcattctctttgtccttgaagttttttgtctgtttttac 23520998  T
Q  244 acatgatcataataagacaaattgtattatctgagtctgatagagaca 291  Q
    || || ||| || | |||||||||||  ||| |||| | |||||||||    
T  23520997 acgtggtcaaaagatgacaaattgtacaatcagagtttaatagagaca 23520950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 25727622 - 25727580
Alignment:
Q  137 ttgcctaatatggataatgtcgttgatgagacatttgaaattc 179  Q
    |||||| ||||| |||||||||||||| |||||||||||||||    
T  25727622 ttgcctgatatgaataatgtcgttgattagacatttgaaattc 25727580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 34062377 - 34062331
Alignment:
Q  223 aagttctttgtttgtttctgcacatgatcataataagacaaattgta 269  Q
    ||||||||||||||||||||||| || ||| || |||||||||||||    
T  34062377 aagttctttgtttgtttctgcacgtggtcacaagaagacaaattgta 34062331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 6e-47; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 106 - 344
Target Start/End: Original strand, 24575748 - 24575987
Alignment:
Q  106 tttgagaagcttcaagcaagaacgt-gaaatattgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgt 204  Q
    ||||||||||||||| |||||| || | |||||| | | ||||||||||||||||||| | |||||||||||||| |||  || |||| ||||| |||||    
T  24575748 tttgagaagcttcaatcaagaatgtcggaatattacttgatatggataatgtcgttgacgtgacatttgaaattcctttgatgcaactggaattatctgt 24575847  T
Q  205 tcattccttttgtcattaaagttctttgtttgtttctgcacatgatcataataagacaaattgtattatctgagtctgatagagacaacttcagaagagc 304  Q
    |||||||||||||| || ||||||||| ||| | | ||||  |||||| || ||||||| ||||| ||||| ||| ||||||||||||||||||||||      
T  24575848 tcattccttttgtccttgaagttctttatttatatatgcatgtgatcagaagaagacaagttgtactatctaagtatgatagagacaacttcagaagaaa 24575947  T
Q  305 acaaagtatgacttggattctaggtccctcagagtcttct 344  Q
    ||||||| |||| ||| |||||||||||||| ||||||||    
T  24575948 acaaagtttgacgtggcttctaggtccctcaaagtcttct 24575987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 239 - 344
Target Start/End: Original strand, 1559175 - 1559280
Alignment:
Q  239 tctgcacatgatcataataagacaaattgtattatctgagtctgatagagacaacttcagaagagcacaaagtatgacttggattctaggtccctcagag 338  Q
    ||||||||| |||| || ||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| | |  |||||||| ||||||||||||    
T  1559175 tctgcacataatcaaaagaagacaaattgtattatttaagtctgatagagacaacttcagaagaggacaaagtttcaggtggattctgggtccctcagag 1559274  T
Q  339 tcttct 344  Q
    ||||||    
T  1559275 tcttct 1559280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 144 - 358
Target Start/End: Complemental strand, 13487929 - 13487716
Alignment:
Q  144 atatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgc 243  Q
    ||||||||||||||||||||  |||||||||  ||||||  ||| ||||  |||| | |||| |||| ||||||| || ||||| ||| ||||| | |||    
T  13487929 atatggataatgtcgttgataggacatttgattttctttg-ctgcaactgaaattatttgttaattctttttgtccttgaagttttttatttgtatttgc 13487831  T
Q  244 acatgatcataataagacaaattgtattatctgagtctgatagagacaacttcagaagagcacaaagtatgacttggattctaggtccctcagagtcttc 343  Q
    || |  ||| || ||||||| ||||| ||| ||  ||| ||||||||||||||||||||||||||||| |||| ||| |||| ||||||| ||||||||     
T  13487830 acgtagtcaaaaaaagacaagttgtactatttgtctctaatagagacaacttcagaagagcacaaagtgtgacgtggcttctgggtccctaagagtcttt 13487731  T
Q  344 tatctctcagagtct 358  Q
    | ||| |||||||||    
T  13487730 tgtctttcagagtct 13487716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 1558514 - 1558606
Alignment:
Q  155 gtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgcacat 247  Q
    ||||||||||||||||||||| ||| ||| ||| |||| ||||| ||||||||||| ||| ||| ||||| |||||||||||| |||||||||    
T  1558514 gtcgttgatgagacatttgaagttcatttactgcaactggaattgtctgttcattcttttagtccttaaatttctttgtttgtatctgcacat 1558606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 144 - 300
Target Start/End: Complemental strand, 10814907 - 10814751
Alignment:
Q  144 atatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgc 243  Q
    |||||||||||  |||| || ||||||||||||||| ||| | ||||||  |||| || ||||||||  |||||| || ||||||||||||||||||| |    
T  10814907 atatggataattccgttaattagacatttgaaattcctttgcagaaactgaaattatccgttcattctctttgtcctttaagttctttgtttgtttctac 10814808  T
Q  244 acatgatcataataagacaaattgtattatctgagtctgatagagacaacttcagaa 300  Q
    || || ||| ||| ||||||||| || |||| || | |||||| ||||||| |||||    
T  10814807 acgtggtcagaatgagacaaattatactatcagactttgatagtgacaactacagaa 10814751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 11704102 - 11703998
Alignment:
Q  135 tattgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtt 234  Q
    ||||||||||||| |||||||| |||||| ||| |||||||| || ||| |||||||| ||||| |  ||||||||  |||||  || ||||||||||||    
T  11704102 tattgcctaatatagataatgttgttgattagatatttgaaaatcctttgctgaaactggaattattcgttcattctctttgtacttgaagttctttgtt 11704003  T
Q  235 tgttt 239  Q
    |||||    
T  11704002 tgttt 11703998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 241
Target Start/End: Complemental strand, 4097896 - 4097791
Alignment:
Q  136 attgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgttt 235  Q
    ||||||| |||||||||||||| ||||| ||| ||||||||||| |||  ||||  | ||||| || ||||||||  |||||| || |||||||||||||    
T  4097896 attgcctgatatggataatgtctttgattagaaatttgaaattcctttgttgaatatggaattatcggttcattctctttgtccttgaagttctttgttt 4097797  T
Q  236 gtttct 241  Q
     |||||    
T  4097796 atttct 4097791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 10821101 - 10821196
Alignment:
Q  136 attgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttcttt 231  Q
    ||||||| ||||||||||| |||||||  || |||||||||||||||| |||||||| ||||| |  |||||||   |||||| ||||||| ||||    
T  10821101 attgcctgatatggataatttcgttgaatagccatttgaaattcttttgctgaaactggaattattcgttcattttctttgtccttaaagtccttt 10821196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 335
Target Start/End: Original strand, 4312358 - 4312548
Alignment:
Q  144 atatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgc 243  Q
    ||||||||| | |||||||| | ||||||||||||||||| |  ||||| ||||| |||| |||||   |||| | || ||||| ||||||||||||| |    
T  4312358 atatggatagtttcgttgattaaacatttgaaattcttttgcaaaaactggaattatctggtcattttatttgcccttgaagttatttgtttgtttctac 4312457  T
Q  244 acatgatcataataagacaaattgtattatctgagtctgatagagacaacttcagaagagcacaaagtatgacttggattctaggtccctca 335  Q
    |  || | | || |||| ||| | || |||| || | |||||||||||||| || ||||| ||||| | |||| |||| ||| |||||||||    
T  4312458 atgtggttagaagaagataaactctactatcagactttgatagagacaactacataagaggacaaa-tctgacgtggagtctgggtccctca 4312548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 29031897 - 29031947
Alignment:
Q  69 tgagagattttggagagtgtcagcgcattaagagtcgtttgagaagcttcaa 120  Q
    |||||||| ||||||||| |||||||||||||||||| || |||||||||||    
T  29031897 tgagagatgttggagagtatcagcgcattaagagtcg-ttcagaagcttcaa 29031947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 155 - 345
Target Start/End: Original strand, 12733585 - 12733775
Alignment:
Q  155 gtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgcacatgatcata 254  Q
    |||||||||| |||||||||||||| ||| ||| |||| | ||| |  |||||||| ||||||| || ||||||||||||||| |||||| || |||| |    
T  12733585 gtcgttgatgggacatttgaaattcatttactgcaactgggattattcgttcattctttttgtccttgaagttctttgtttgtatctgcaaataatcaga 12733684  T
Q  255 ataagacaaattgtattatctgagtctgatagagacaacttcagaagagcacaaagtatgacttggattctaggtccctcagagtcttcta 345  Q
    | |||||||| | || |||||| |||| ||||||||||||||| ||||| ||||| | |||| |||||| | ||||||||||| |||||||    
T  12733685 agaagacaaactttactatctgcgtctaatagagacaacttcataagaggacaaattctgacatggattatgggtccctcagaatcttcta 12733775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 144 - 294
Target Start/End: Original strand, 32957577 - 32957726
Alignment:
Q  144 atatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgc 243  Q
    |||||||||||||||||||| ||||||| ||||||| ||| |||||||| ||||| ||||||||||   |||||| || ||||||||||||||||||| |    
T  32957577 atatggataatgtcgttgattagacattcgaaattcctttgctgaaactggaattatctgttcattatctttgtccttgaagttctttgtttgtttctac 32957676  T
Q  244 acatgatcataataagacaaattgtattatctgagtctgatagagacaact 294  Q
    |  || ||| || |||||||||||||||||| || | ||||||||||||||    
T  32957677 atgtggtcagaa-aagacaaattgtattatcagattttgatagagacaact 32957726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 239 - 344
Target Start/End: Complemental strand, 15757200 - 15757095
Alignment:
Q  239 tctgcacatgatcataataagacaaattgtattatctgagtctgatagagacaacttcagaagagcacaaagtatgacttggattctaggtccctcagag 338  Q
    ||||||||| |||| || ||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| | |  |||||||| ||||||||||||    
T  15757200 tctgcacataatcaaaagaagacaaattgtattatttaagtctgatagagacaacttcagaagaggacaaagtttcaggtggattctgggtccctcagag 15757101  T
Q  339 tcttct 344  Q
    ||||||    
T  15757100 tcttct 15757095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 136 - 241
Target Start/End: Complemental strand, 10646907 - 10646802
Alignment:
Q  136 attgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgttt 235  Q
    |||||||  ||||||||||||||||||| ||||||||||||||| ||||||| |||| ||||| | |||||||||  |||||| || |||||||||||||    
T  10646907 attgcctgttatggataatgtcgttgattagacatttgaaattccttttctgtaactggaattatttgttcattctctttgtccttgaagttctttgttt 10646808  T
Q  236 gtttct 241  Q
    ||||||    
T  10646807 gtttct 10646802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 229 - 342
Target Start/End: Complemental strand, 7561049 - 7560936
Alignment:
Q  229 tttgtttgtttctgcacatgatcataataagacaaattgtattatctgagtctgatagagacaacttcagaagagcacaaagtatgacttggattctagg 328  Q
    ||||||||| |||||||| ||| | || ||||||||||||| ||||||||||||||| ||| |||||||||  || ||||||  |||| |||||||| ||    
T  7561049 tttgtttgtatctgcacacgataagaagaagacaaattgtactatctgagtctgataaagataacttcagacaaggacaaagactgacgtggattctggg 7560950  T
Q  329 tccctcagagtctt 342  Q
    ||||||||||||||    
T  7560949 tccctcagagtctt 7560936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 15757861 - 15757769
Alignment:
Q  155 gtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgcacat 247  Q
    ||||||||||||||||||||| ||| ||| ||| |||| ||||| ||||||||||| ||| ||| ||||| |||||||||||| |||||||||    
T  15757861 gtcgttgatgagacatttgaagttcatttactgcaactggaattgtctgttcattcttttagtccttaaatttctttgtttgtatctgcacat 15757769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 335
Target Start/End: Original strand, 1782986 - 1783177
Alignment:
Q  144 atatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgc 243  Q
    ||||||| |||||||||||| ||||||||||||||| ||| ||  |||  ||||| || ||||||||  |||||  || ||||||||||||| ||| | |    
T  1782986 atatggacaatgtcgttgattagacatttgaaattcctttactacaacgggaattatccgttcattctctttgttcttgaagttctttgtttatttttac 1783085  T
Q  244 acatgatcataataagacaaattgtattatctgagtc-tgatagagacaacttcagaagagcacaaagtatgacttggattctaggtccctca 335  Q
    || || ||| || | ||||||||||| |||| ||||| |||| |||||| || |||||||| ||||| |||||| ||  |||| |||||||||    
T  1783086 acgtggtcagaagaggacaaattgtactatcagagtcttgattgagacatctacagaagaggacaaa-tatgacgtgtcttctgggtccctca 1783177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 197
Target Start/End: Complemental strand, 7561170 - 7561052
Alignment:
Q  79 tggagagtgtcagcgcattaagagtcgtttgagaagcttcaagcaagaacgt-gaaatattgcctaatatggataatgtcgttgatgagacatttgaaat 177  Q
    |||||||||| |||||||  |||||| ||| ||||||||||| |||||| || | |||||||  | |||||||||||||||||||||  |||||||||||    
T  7561170 tggagagtgttagcgcatctagagtcattt-agaagcttcaatcaagaatgttggaatattgtttgatatggataatgtcgttgatggaacatttgaaat 7561072  T
Q  178 tctttttctgaaactagaat 197  Q
    || ||| ||| |||||||||    
T  7561071 tcctttactggaactagaat 7561052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 32562694 - 32562657
Alignment:
Q  213 tttgtcattaaagttctttgtttgtttctgcacatgat 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32562694 tttgtcattaaagttctttgtttgtttctgcacatgat 32562657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 309
Target Start/End: Complemental strand, 27707450 - 27707279
Alignment:
Q  137 ttgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttg 236  Q
    |||||| ||||||||| |  | ||||| ||||||||||||||| ||  || |||||  |||| || ||| |||| ||||||| || ||||||||||||||    
T  27707450 ttgcctgatatggatagttccattgattagacatttgaaattccttg-ctaaaactgaaattatcagtttattctttttgtctttgaagttctttgtttg 27707352  T
Q  237 tttctgcacatgatcataataagacaaattgtattatctgagtctgatagagacaacttcagaagagcacaaa 309  Q
    ||||| ||  || ||| || | ||||||||||| |||  || | |||||||||||||| || ||||| |||||    
T  27707351 tttctacatgtggtcagaagaggacaaattgtactattagactttgatagagacaactacaaaagaggacaaa 27707279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 17891477 - 17891381
Alignment:
Q  144 atatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttct 241  Q
    ||||||||||||| |||||| ||||||||||||||| ||| ||| |||| ||||| ||  ||||||   |||||| || || ||||||||||||||||    
T  17891477 atatggataatgttgttgattagacatttgaaattcctttgctg-aactggaattatccattcattatctttgtccttgaaattctttgtttgtttct 17891381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 342
Target Start/End: Original strand, 10924441 - 10924507
Alignment:
Q  275 tgagtctgatagagacaacttcagaagagcacaaagtatgacttggattctaggtccctcagagtctt 342  Q
    ||||||||||||||||||||||||||||  ||||||| |||| ||  || | ||||||||||||||||    
T  10924441 tgagtctgatagagacaacttcagaagaagacaaagt-tgacatgacttatgggtccctcagagtctt 10924507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 342
Target Start/End: Original strand, 5265356 - 5265431
Alignment:
Q  266 tgtattatctgagtctgatagagacaacttcagaagagcacaaagtatgacttggattctaggtccctcagagtctt 342  Q
    |||| |||| |||| |||||||||||||| |||||||  ||||| | |||| ||| |||| ||||||||||||||||    
T  5265356 tgtactatcagagtttgatagagacaactacagaagaagacaaa-tctgacgtggcttctgggtccctcagagtctt 5265431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 166 - 355
Target Start/End: Complemental strand, 4746350 - 4746161
Alignment:
Q  166 gacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgcacatgatcataataagacaaat 265  Q
    ||||||||||||||||||  || |||| ||||| | ||||||||||||||||| || ||||||||||||||| | | ||||||||||  | || ||||||    
T  4746350 gacatttgaaattcttttattgcaactggaattatttgttcattccttttgtccttgaagttctttgtttgtattttcacatgatcaggagaatacaaat 4746251  T
Q  266 tgtattatctgagtctgatagagacaacttcagaagagcacaaagtatgacttggattctaggtccctcagagtcttctatctctcagag 355  Q
    |||| ||||||| ||| ||||||||||||| | || |  |||||||||||| |||||||  ||||| |||||||||| | ||| ||||||    
T  4746250 tgtactatctgaatctaatagagacaactttaaaatatgacaaagtatgacgtggattccgggtccttcagagtcttatgtctttcagag 4746161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 140 - 293
Target Start/End: Original strand, 11545187 - 11545341
Alignment:
Q  140 cctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgttt 239  Q
    |||||||||||||||||| ||||| | | ||||||||||| |||  ||||||| ||||| || ||| ||||  |||||| || ||||| |||||||||||    
T  11545187 cctaatatggataatgtcattgattaaaaatttgaaattcctttgttgaaactggaattatccgtttattctctttgtccttgaagttttttgtttgttt 11545286  T
Q  240 ctgcacatgatcataataagacaaattgtattatctgagtc-tgatagagacaac 293  Q
    || |||||| ||| || |||||||||||||||||| ||||| |||||||||||||    
T  11545287 ctacacatggtcagaagaagacaaattgtattatcagagtcttgatagagacaac 11545341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 137 - 309
Target Start/End: Complemental strand, 21810111 - 21809939
Alignment:
Q  137 ttgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttg 236  Q
    |||||| ||||||||||||| |||||| |||||||  |||||| |||  | ||||||||||| |||||||||||  |||||| || ||||| ||||||||    
T  21810111 ttgcctgatatggataatgttgttgattagacattcaaaattcatttattcaaactagaattatctgttcattctctttgtccttgaagttatttgtttg 21810012  T
Q  237 tttctgcacatgatcataataagacaaattgtattatctgagtctgatagagacaacttcagaagagcacaaa 309  Q
    ||| | ||| |||||  ||||||||| |||||| |||| || | ||||  |||||||| |||||||| |||||    
T  21810011 tttttacacgtgatctaaataagacagattgtactatcagactttgattaagacaactacagaagaggacaaa 21809939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 136 - 248
Target Start/End: Complemental strand, 11449521 - 11449409
Alignment:
Q  136 attgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgttt 235  Q
    |||||||||||||||||||||| ||||| ||||||||||||||| |||  ||||||| ||||| || |||||||   |||||| || ||||| |||||||    
T  11449521 attgcctaatatggataatgtcattgattagacatttgaaattcctttgttgaaactggaattatccgttcattttctttgtccttgaagttttttgttt 11449422  T
Q  236 gtttctgcacatg 248  Q
    |||||| ||||||    
T  11449421 gtttctacacatg 11449409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 141 - 335
Target Start/End: Original strand, 11419689 - 11419882
Alignment:
Q  141 ctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttc 240  Q
    ||||| ||||||||  | ||||| ||||||||||||||| | |  ||||| |  |||| | |||||||||  |||||| || ||||||||||||||||||    
T  11419689 ctaatttggataattccattgattagacatttgaaattcctctattgaaattgtaattatatgttcattctctttgtccttgaagttctttgtttgtttc 11419788  T
Q  241 tgcacatgatcataataagacaaattgtattatctgagtctgatagagacaacttcagaagagcacaaagtatgacttggattctaggtccctca 335  Q
    | ||| || ||| || |||| ||| ||||||||| || | ||||||| |||||| |||||||| ||||| | |||| |||| ||| |||||||||    
T  11419789 tacacgtggtcagaagaagaaaaactgtattatcagactttgatagaaacaactacagaagaggacaaa-tctgacatggagtctgggtccctca 11419882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 23866052 - 23866132
Alignment:
Q  204 ttcattccttttgtcattaaagttctttgtttgtttctgcacatgatcataataagacaaattgtattatctgagtctgat 284  Q
    ||||||||  ||||| || ||||||||||||||||| |||||||||||| || | |||||| |||| ||||||||||||||    
T  23866052 ttcattccaattgtccttgaagttctttgtttgtttatgcacatgatcagaagaggacaaactgtactatctgagtctgat 23866132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 344
Target Start/End: Complemental strand, 15365856 - 15365783
Alignment:
Q  271 tatctgagtctgatagagacaacttcagaagagcacaaagtatgacttggattctaggtccctcagagtcttct 344  Q
    |||||| |||| |||||||||| |||| ||||| ||||| |||||| |||||| | ||||||||||||||||||    
T  15365856 tatctgcgtctaatagagacaaattcataagaggacaaattatgacgtggattatgggtccctcagagtcttct 15365783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 17743607 - 17743668
Alignment:
Q  213 tttgtcattaaagttctttgtttgtttctgcacatgatcataataagacaaattgtattatc 274  Q
    ||||||||| || |||||||||||||||||||| || |||||| ||||||||| ||| ||||    
T  17743607 tttgtcattgaacttctttgtttgtttctgcacgtggtcataagaagacaaatagtactatc 17743668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 47575674 - 47575713
Alignment:
Q  140 cctaatatggataatgtcgttgatgagacatttgaaattc 179  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  47575674 cctaatatggataatgttgttgattagacatttgaaattc 47575713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 16405004 - 16404955
Alignment:
Q  133 aatattgcctaatatggataatgtcgttgatgagacatttgaaattcttt 182  Q
    ||||||| || ||||||||||||| |||||| | ||||||||||||||||    
T  16405004 aatattgtctgatatggataatgtagttgattatacatttgaaattcttt 16404955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 144 - 342
Target Start/End: Complemental strand, 26335683 - 26335486
Alignment:
Q  144 atatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgc 243  Q
    |||||||||||||| ||||  ||||||||||||||| ||| ||| |||| ||||| || ||||||| |||||||| || | ||||||| ||||| |||||    
T  26335683 atatggataatgtc-ttgaaaagacatttgaaattcctttgctgcaactggaattatccgttcatttcttttgtccttgaggttctttatttgtatctgc 26335585  T
Q  244 acatgatcataataagacaaattgtattatctgagtctgatagagacaacttcagaagagcacaaagtatgact-tggattctaggtccctcagagtctt 342  Q
    ||||| ||| || | ||||||||||| |||| |||||||||||||| | |||||||||| |||||| | ||||| | | |||||||||||||| ||||||    
T  26335584 acatggtcagaagaggacaaattgtactatcagagtctgatagagatagcttcagaagaacacaaa-tctgactgttgcttctaggtccctcaaagtctt 26335486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 165 - 302
Target Start/End: Original strand, 26013725 - 26013862
Alignment:
Q  165 agacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgcacatgatcataataagacaaa 264  Q
    ||||||||||||||| ||| | |||||  ||||| || |||  |||  ||| || || ||||||||||||||||||| |||||| ||| || ||||||||    
T  26013725 agacatttgaaattcctttgcagaaacaggaattatccgtttgttctctttttccttgaagttctttgtttgtttctacacatggtcagaagaagacaaa 26013824  T
Q  265 ttgtattatctgagtctgatagagacaacttcagaaga 302  Q
    ||||| |||| || | |||||||||||||| |||||||    
T  26013825 ttgtactatcagattttgatagagacaactacagaaga 26013862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 231
Target Start/End: Complemental strand, 12859969 - 12859843
Alignment:
Q  106 tttgagaagcttcaagcaagaacgt-gaaatattgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgt 204  Q
    |||||||||||| || |||||| || |||||||| | | ||||||||||||||||||||| ||||||||||| || ||| ||| ||||  |||| | | |    
T  12859969 tttgagaagctttaatcaagaatgttgaaatattacttgatatggataatgtcgttgatgtgacatttgaaaatcctttgctgcaactgaaattatattt 12859870  T
Q  205 tcattccttttgtcattaaagttcttt 231  Q
    || ||||||||||  || |||||||||    
T  12859869 tcgttccttttgttcttgaagttcttt 12859843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 37336630 - 37336711
Alignment:
Q  160 tgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttct 241  Q
    |||| ||||||||||||||| ||| | |||||  ||||| || ||||||||  |||||| || |||||||||||||||||||    
T  37336630 tgattagacatttgaaattcctttgcagaaacatgaattatccgttcattctctttgtccttgaagttctttgtttgtttct 37336711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 294
Target Start/End: Original strand, 27499785 - 27499935
Alignment:
Q  144 atatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgc 243  Q
    |||||||||||   |||| | ||||| ||||||||| ||| ||  ||||  |||| || ||||||||  ||| || || ||||| ||||| ||||||| |    
T  27499785 atatggataatactgttggttagacaattgaaattcatttactccaactgaaattatccgttcattctctttatctttgaagttatttgtctgtttctac 27499884  T
Q  244 acatgatcataataagacaaattgtattatctgagtctgatagagacaact 294  Q
    || || ||| || | ||||||||||| ||||||| | ||||||||||||||    
T  27499885 acgtggtcaaaagatgacaaattgtactatctgaatttgatagagacaact 27499935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 24838416 - 24838335
Alignment:
Q  213 tttgtcattaaagttctttgtttgtttctgcacatgatcataataagacaaattgtattatctgagtctgatagagacaact 294  Q
    |||||| || ||||||||||||||||| | |||  |||||||| |||||||| ||||  |||||| | ||||| ||||||||    
T  24838416 tttgtccttgaagttctttgtttgtttatacacgggatcataagaagacaaaatgtacaatctgactttgataaagacaact 24838335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 84 - 294
Target Start/End: Complemental strand, 30806024 - 30805812
Alignment:
Q  84 agtgtcagcgcattaagagtcgtttgagaagcttcaag-caagaacgt-gaaatattgcctaatatggataatgtcgttgatgagacatttgaaattctt 181  Q
    |||||||||||||||||||||||| ||||||||||||  |||| || | | |  ||||||| |||||||||||||||||||| ||||||| ||||||| |    
T  30806024 agtgtcagcgcattaagagtcgtt-gagaagcttcaaatcaaggacattggaccattgcctgatatggataatgtcgttgattagacattcgaaattcct 30805926  T
Q  182 tttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgcacatgatcataataagacaaattgtattatctgagt-c 280  Q
    ||  ||||||||||||| || |||||||   ||| || || ||||||||||||||||||| ||| ||  || || ||||||||||||| |||| ||||      
T  30805925 ttcatgaaactagaattatccgttcattgtctttctccttgaagttctttgtttgtttctacacgtggccagaagaagacaaattgtactatcagagtat 30805826  T
Q  281 tgatagagacaact 294  Q
    ||||||||||||||    
T  30805825 tgatagagacaact 30805812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 136 - 281
Target Start/End: Original strand, 26898029 - 26898174
Alignment:
Q  136 attgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgttt 235  Q
    ||||||| ||||||||||| || ||||| ||||||||||||||  ||| |||||||||||||| | |||| |||  ||||||| ||  |||||||||| |    
T  26898029 attgccttatatggataatctcattgattagacatttgaaatttctttactgaaactagaattatttgttaattatttttgtccttgcagttctttgtat 26898128  T
Q  236 gtttctgcacatgatcataataagacaaattgtattatctgagtct 281  Q
    |||||| ||| || ||| || ||||||||||||| |||| ||||||    
T  26898129 gtttctacacgtggtcagaagaagacaaattgtactatcagagtct 26898174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 294
Target Start/End: Complemental strand, 17316498 - 17316369
Alignment:
Q  165 agacatttgaaattctttttctgaaactagaatt-ttctgttcattccttttgtcattaaagttctttgtttgtttctgcacatgatcataataagacaa 263  Q
    |||||||  |||||| |||| ||||||||||||| |||| ||||||   |||||| ||||||||| |||||||||||| |||||| ||| || |||||||    
T  17316498 agacattcaaaattccttttttgaaactagaattattct-ttcattttctttgtccttaaagttccttgtttgtttctacacatggtcagaagaagacaa 17316400  T
Q  264 attgtattatctgagtctgatagagacaact 294  Q
    |||||| |||| || | ||||||||||||||    
T  17316399 attgtactatcagactttgatagagacaact 17316369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 300
Target Start/End: Original strand, 33438901 - 33439068
Alignment:
Q  136 attgcctaatatggataatgtcgttgatgagacatttgaaattcttttt--ctgaaactagaattttctgttcattccttttgtcattaaagttctttgt 233  Q
    ||||||| |||||||||||||| ||||| |||||||   |||| |||||  |||||||| ||||| || | |||||   |||||| || |||||||||||    
T  33438901 attgcctgatatggataatgtcattgattagacattcataatttttttttgctgaaactggaattatccgctcattatctttgtccttgaagttctttgt 33439000  T
Q  234 ttgtttctgcacatgatcataataagacaaattgtattatctgagtc-tgatagagacaacttcagaa 300  Q
    ||| || | ||| || ||| || |||| ||||||||||||| ||||| |||||||||||||| |||||    
T  33439001 ttgcttatacacgtggtcagaagaagataaattgtattatcagagtcttgatagagacaactacagaa 33439068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 19003256 - 19003155
Alignment:
Q  140 cctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgttt 239  Q
    ||||||||| |||||||||||||| ||||||||||||||  ||| || |||||  |||| || ||||||||  |||||| || || ||||||||||||||    
T  19003256 cctaatatgaataatgtcgttgattagacatttgaaatttctttgctaaaactgaaattatccgttcattctctttgtccttgaaattctttgtttgttt 19003157  T
Q  240 ct 241  Q
    ||    
T  19003156 ct 19003155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 302
Target Start/End: Complemental strand, 19960381 - 19960231
Alignment:
Q  151 taatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgcacatgat 250  Q
    ||||||||||||  ||||||||||||||| ||| ||  ||  |||||| | ||||||||||  ||||| || |||||||| || ||||| ||||| || |    
T  19960381 taatgtcgttgaaaagacatttgaaattcctttgcttcaaaaagaattatttgttcattccaattgtctttgaagttctt-gtatgtttttgcacgtggt 19960283  T
Q  251 cataataagacaaattgtattatctgagtctgatagagacaacttcagaaga 302  Q
    || || |||||||| ||||  ||||||||||||| | |||| ||||||||||    
T  19960282 cagaagaagacaaagtgtaccatctgagtctgatggtgacatcttcagaaga 19960231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 18932816 - 18932728
Alignment:
Q  144 atatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttg 232  Q
    |||||||||||||||||||| || |||||||||||| ||| ||| ||||  |||| | |||||||||  |||||| || ||||||||||    
T  18932816 atatggataatgtcgttgattaggcatttgaaattcctttactgcaactgtaattatatgttcattcactttgtcctttaagttctttg 18932728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 12397787 - 12397861
Alignment:
Q  136 attgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattc 210  Q
    ||||||| |||||||||||||| ||||| | ||||||||||||| ||| ||||| ||| || | |||||||||||    
T  12397787 attgcctgatatggataatgtcattgattaaacatttgaaattcatttgctgaagctaaaactatctgttcattc 12397861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 241
Target Start/End: Complemental strand, 17496774 - 17496669
Alignment:
Q  136 attgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgttt 235  Q
    ||||||| ||||||||||| |||||||  || |||||||||||| |||  |||||||  || ||||||||| |||  |||||| || || |||||||| |    
T  17496774 attgcctgatatggataatttcgttgaatagtcatttgaaattcctttgttgaaactgaaaatttctgttctttctctttgtccttgaatttctttgtat 17496675  T
Q  236 gtttct 241  Q
    ||||||    
T  17496674 gtttct 17496669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 17103460 - 17103360
Alignment:
Q  133 aatattgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttg 232  Q
    |||||| ||| |||| ||||||| | ||||  ||||||||||||||  ||| ||| |||| ||||| |||||||||||  ||| || |||||||||||||    
T  17103460 aatatttcctgatatagataatgccattgaatagacatttgaaatttctttgctgcaactggaattatctgttcattctctttatccttaaagttctttg 17103361  T
Q  233 t 233  Q
    |    
T  17103360 t 17103360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 281
Target Start/End: Complemental strand, 21721201 - 21721122
Alignment:
Q  202 tgttcattccttttgtcattaaagttctttgtttgtttctgcacatgatcataataagacaaattgtattatctgagtct 281  Q
    |||||||| | | |||| || ||||||||||||||| | | |||||||||| || ||||||||||||| |||| ||||||    
T  21721201 tgttcatttcatatgtccttgaagttctttgtttgtatttacacatgatcagaagaagacaaattgtaatatccgagtct 21721122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 22666269 - 22666342
Alignment:
Q  168 catttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttct 241  Q
    ||||||||||| |||  || ||||| ||||| |||||||||||  |||||| || |||||||||||| ||||||    
T  22666269 catttgaaattttttcgcttaaactggaattatctgttcattctctttgtccttgaagttctttgttcgtttct 22666342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 34488213 - 34488245
Alignment:
Q  213 tttgtcattaaagttctttgtttgtttctgcac 245  Q
    ||||||||| |||||||||||||||||||||||    
T  34488213 tttgtcattgaagttctttgtttgtttctgcac 34488245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 145 - 300
Target Start/End: Original strand, 42256264 - 42256419
Alignment:
Q  145 tatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgca 244  Q
    |||||||||| || ||||| ||||||||||||||| ||| ||| || |||||||  | |||||||||||||||  || ||||||||||||||| ||||||    
T  42256264 tatggataatatcattgattagacatttgaaattcctttactgcaattagaattacccgttcattccttttgtacttgaagttctttgtttgtatctgca 42256363  T
Q  245 catgatcataataagacaaattgtattatctgagtctgatagagacaacttcagaa 300  Q
    | || | | || |||||||| |||| |||| |||||||||| ||||| ||||||||    
T  42256364 cgtggttacaagaagacaaaatgtactatcagagtctgataaagacagcttcagaa 42256419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 134 - 344
Target Start/End: Complemental strand, 19878191 - 19877982
Alignment:
Q  134 atattgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgt 233  Q
    ||||| ||| |||||||||||||||||||| ||| ||||||||||| |||  |  |||||||||| ||  ||||||   |||||| || || || |||||    
T  19878191 atatttcctgatatggataatgtcgttgattagatatttgaaattcctttgtttcaactagaattatccattcattatctttgtccttgaatttttttgt 19878092  T
Q  234 ttgtttctgcacatgatcataataagacaaattgtattatctgagtctgatagagacaacttcagaagagcacaaagtatgacttggattctaggtccct 333  Q
     ||||||| |||||| ||| || | ||||||| ||| |||| | || ||||||||| |||| || ||||  ||||| | |||| ||| || | || ||||    
T  19878091 ctgtttctccacatggtcagaagatgacaaatggtactatcagggtttgatagagataactacaaaagaagacaaa-tctgacgtggcttttgggcccct 19877993  T
Q  334 cagagtcttct 344  Q
    |||||||||||    
T  19877992 cagagtcttct 19877982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 21748699 - 21748583
Alignment:
Q  82 agagtgtcagcgcattaagagtcgtttgagaagcttcaag-caagaacgtgaaat-attgcctaatatggataatgtcgttgatgagacatttgaaattc 179  Q
    |||||||||||| ||||||||||||| || |||||||||  |||| ||||   || |||||||||||||||||||  ||||||  || ||||||||||||    
T  21748699 agagtgtcagcgaattaagagtcgtt-gaaaagcttcaaatcaaggacgttggatcattgcctaatatggataatcccgttgaatagtcatttgaaattc 21748601  T
Q  180 tttttctgaaactagaat 197  Q
     ||| |||||||| ||||    
T  21748600 atttgctgaaactggaat 21748583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 294
Target Start/End: Complemental strand, 16917518 - 16917379
Alignment:
Q  156 tcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgcacatgatcataa 255  Q
    |||||||| ||||||||||||||| ||| ||||||||  || | || | ||||||  |||||| || || ||| |||||||| ||| ||| || ||| ||    
T  16917518 tcgttgattagacatttgaaattcctttgctgaaactgaaagtatccgatcattctctttgtccttgaaattccttgtttgtatctacacgtggtcaaaa 16917419  T
Q  256 taagacaaattgtattatctgagtc-tgatagagacaact 294  Q
     |||| |||||||| |||| ||||| |||||| |||||||    
T  16917418 gaagaaaaattgtactatcagagtcttgatagcgacaact 16917379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 265
Target Start/End: Complemental strand, 27765727 - 27765606
Alignment:
Q  144 atatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgc 243  Q
    |||||||||||| ||||||| | |||||  |||||| |||  |||| |  ||||| || ||||||||  | |||| || ||||||||||||||||||| |    
T  27765727 atatggataatgacgttgattatacattcaaaattcctttgttgaagccggaattatccgttcattctctctgtccttgaagttctttgtttgtttctac 27765628  T
Q  244 acatgatcataataagacaaat 265  Q
    || || ||| || |||||||||    
T  27765627 acgtggtcagaagaagacaaat 27765606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 35666198 - 35666153
Alignment:
Q  134 atattgcctaatatggataatgtcgttgatgagacatttgaaattc 179  Q
    ||||||||| |||||||||||| | ||||| |||||||||||||||    
T  35666198 atattgcctcatatggataatgacattgattagacatttgaaattc 35666153  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 309
Target Start/End: Complemental strand, 16587204 - 16587053
Alignment:
Q  158 gttgatgagacatttgaaattctttttctgaaactagaatt-ttctgttcattccttttgtcattaaagttctttgtttgtttctgcacatgatcataat 256  Q
    |||||| ||||||||||||||| ||| |  ||||||||||| |||| |||||||  |||||| || |||||| |||||||||| | ||  || ||| ||     
T  16587204 gttgattagacatttgaaattcctttgcataaactagaattattct-ttcattctctttgtccttgaagttcattgtttgtttgtacatgtggtcagaag 16587106  T
Q  257 aagacaaattgtattatctgagtctgatagagacaacttcagaagagcacaaa 309  Q
    |||||||| | || |||| || | || ||||||||||| || ||||| |||||    
T  16587105 aagacaaactatactatcagactttggtagagacaactacataagaggacaaa 16587053  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 140 - 302
Target Start/End: Complemental strand, 14427349 - 14427187
Alignment:
Q  140 cctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgttt 239  Q
    |||||||||||||||||||||||  |||||||  || ||| |||  ||||  | ||||| |||||||||||  | |||| || |||||||||||||||||    
T  14427349 cctaatatggataatgtcgttgagtagacattcaaatttcctttcatgaacttggaattatctgttcattctctatgtccttgaagttctttgtttgttt 14427250  T
Q  240 ctgcacatgatcataataagacaaattgtattatctgagtctgatagagacaacttcagaaga 302  Q
     | ||| || | | || ||||||||||||| |||| || | |||||||||||||| |||||||    
T  14427249 atacacgtggttagaaaaagacaaattgtactatcagactttgatagagacaactacagaaga 14427187  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 144 - 274
Target Start/End: Complemental strand, 13291811 - 13291681
Alignment:
Q  144 atatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgc 243  Q
    ||||||||||||   ||||| ||||||||||||||  |||  |||||||  |||| || |||||||| ||||||| ||  |||||||||||||||||| |    
T  13291811 atatggataatgcaattgattagacatttgaaatttctttgttgaaactgaaattatccgttcattctttttgtccttggagttctttgtttgtttctac 13291712  T
Q  244 acatgatcataataagacaaattgtattatc 274  Q
    || || ||| || ||||||||||||| ||||    
T  13291711 acgtggtcagaagaagacaaattgtactatc 13291681  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 274
Target Start/End: Original strand, 10928932 - 10929069
Alignment:
Q  137 ttgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttg 236  Q
    |||||| |||||||||||| | ||||| |||||||  ||||||  || |||||||| ||||| ||  |||||||  ||| || || |||||| |||||||    
T  10928932 ttgcctgatatggataatgccattgattagacattcaaaattccattgctgaaactggaattatccattcattctctttatccttgaagttccttgtttg 10929031  T
Q  237 tttctgcacatgatcataataagacaaattgtattatc 274  Q
    ||||| |||||| ||| || | ||||||||||||||||    
T  10929032 tttctacacatggtcagaagaggacaaattgtattatc 10929069  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 269
Target Start/End: Original strand, 17119027 - 17119125
Alignment:
Q  171 ttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgcacatgatcataataagacaaattgta 269  Q
    ||||||||| ||| | |||||| ||||| || ||||||||  |||||| || |||||||||||||||||||  || |||||| || |||||||||||||    
T  17119027 ttgaaattcctttgcggaaactggaattatcagttcattctctttgtccttgaagttctttgtttgtttctatacgtgatcagaagaagacaaattgta 17119125  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 4514652 - 4514751
Alignment:
Q  137 ttgcctaatatggataatgtcgttgatgagacatttgaaattcttttt-ctgaaactagaattttctgttcattccttttgtcattaaagttctttgttt 235  Q
    |||||| ||| |||||||||||| ||| |  |||||||||||| |||| ||| |||||||||| ||||||| |||  |||||  || |||||||||||||    
T  4514652 ttgcctgataaggataatgtcgtggattattcatttgaaattccttttgctgcaactagaattatctgttcgttctctttgtacttgaagttctttgttt 4514751  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 4508179 - 4508251
Alignment:
Q  214 ttgtcattaaagttctttgtttgtttctgcacatgatcataataagacaaattgtattatctgagtctgatag 286  Q
    ||||| || ||||||||||| | ||||||||| |||||| || | |||||| | || ||||||||||||||||    
T  4508179 ttgtccttgaagttctttgtctatttctgcacgtgatcaaaagaggacaaaatatactatctgagtctgatag 4508251  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 4767855 - 4767763
Alignment:
Q  147 tggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgttt 239  Q
    |||||| | |||||||| ||||||||||| ||| ||| | ||||| |||||| || ||||||||  | |||| || ||||| |||||||||||    
T  4767855 tggatagtttcgttgattagacatttgaatttcctttgcagaaacaagaattatccgttcattctctctgtccttgaagttatttgtttgttt 4767763  T

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Target: scaffold0650 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 294
Target Start/End: Original strand, 5865 - 6022
Alignment:
Q  137 ttgcctaatatggataatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttg 236  Q
    |||||||||||| ||| |   |||||| ||||||||||||||| ||| |||||||| ||||| ||| |||||||  ||||||  | ||||||||| ||||    
T  5865 ttgcctaatatgaatagttctgttgattagacatttgaaattcctttgctgaaacttgaattatctattcattctctttgtccctgaagttctttctttg 5964  T
Q  237 tttctgcacatgatcataataagacaaattgtattatctgagtctgatagagacaact 294  Q
    ||| | ||| |  ||| || |||||||| |||||||||  | | ||||||||||||||    
T  5965 tttttacacgttgtcagaagaagacaaactgtattatcaaattttgatagagacaact 6022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1551 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1551
Description:

Target: scaffold1551; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 344
Target Start/End: Complemental strand, 628 - 555
Alignment:
Q  271 tatctgagtctgatagagacaacttcagaagagcacaaagtatgacttggattctaggtccctcagagtcttct 344  Q
    |||||| |||| |||||||||| |||| ||||| ||||| |||||| |||||| | ||||||||||||||||||    
T  628 tatctgcgtctaatagagacaaattcataagaggacaaattatgacgtggattatgggtccctcagagtcttct 555  T

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Target: scaffold0514 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 7272 - 7342
Alignment:
Q  204 ttcattccttttgtcattaaagttctttgtttgtttctgcacatgatcataataagacaaattgtattatc 274  Q
    ||||||||  ||||| || ||||||||||||||||||||||| || ||| || | ||||||||||||||||    
T  7272 ttcattccaattgtccttgaagttctttgtttgtttctgcacgtggtcagaagaggacaaattgtattatc 7342  T

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Target: scaffold0329 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 281
Target Start/End: Original strand, 4309 - 4438
Alignment:
Q  151 taatgtcgttgatgagacatttgaaattctttttctgaaactagaattttctgttcattccttttgtcattaaagttctttgtttgtttctgcacatgat 250  Q
    ||||||||||||  || |||||||||||| |||  ||||    ||||| || ||||||||| |||||| || |||||||| |||||| ||||||| ||||    
T  4309 taatgtcgttgaaaagtcatttgaaattcctttgttgaacaaggaattatccgttcattccatttgtccttgaagttctt-gtttgtatctgcacgtgat 4407  T
Q  251 cataataagacaaattgtattatctgagtct 281  Q
    || || |||||||| | || |||||||||||    
T  4408 cagaagaagacaaaatatactatctgagtct 4438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1190 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 1298 - 1368
Alignment:
Q  204 ttcattccttttgtcattaaagttctttgtttgtttctgcacatgatcataataagacaaattgtattatc 274  Q
    ||||||||  ||||| || ||||||||||||||||||||||| || ||| || | |||||| |||||||||    
T  1298 ttcattccaattgtccttgaagttctttgtttgtttctgcacgtggtcagaagaggacaaactgtattatc 1368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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