View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_low_39 (Length: 409)

Name: NF16378_low_39
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_low_39
NF16378_low_39
[»] chr5 (8 HSPs)
chr5 (16-392)||(9594847-9595224)
chr5 (39-304)||(28569760-28570025)
chr5 (80-387)||(12237912-12238219)
chr5 (45-282)||(26102842-26103079)
chr5 (79-246)||(36419295-36419462)
chr5 (80-132)||(35077517-35077569)
chr5 (80-132)||(39366201-39366253)
chr5 (103-183)||(41388351-41388431)
[»] chr6 (10 HSPs)
chr6 (39-301)||(12691861-12692122)
chr6 (70-279)||(13094864-13095073)
chr6 (80-350)||(14392275-14392545)
chr6 (94-350)||(2820848-2821104)
chr6 (78-183)||(32160164-32160269)
chr6 (84-133)||(9580876-9580925)
chr6 (78-167)||(14570918-14571007)
chr6 (86-182)||(12148244-12148340)
chr6 (80-120)||(9313266-9313306)
chr6 (80-120)||(19248585-19248625)
[»] chr8 (8 HSPs)
chr8 (79-349)||(25721040-25721310)
chr8 (43-248)||(43799523-43799730)
chr8 (45-304)||(12677588-12677847)
chr8 (80-183)||(31136074-31136177)
chr8 (80-133)||(40219879-40219932)
chr8 (78-156)||(19298017-19298095)
chr8 (80-165)||(33154804-33154889)
chr8 (80-120)||(9991324-9991364)
[»] chr1 (7 HSPs)
chr1 (198-387)||(18714966-18715152)
chr1 (113-326)||(24662444-24662657)
chr1 (79-326)||(16587481-16587728)
chr1 (129-304)||(750475-750650)
chr1 (36-136)||(18715164-18715264)
chr1 (210-267)||(10491282-10491339)
chr1 (80-133)||(10608272-10608325)
[»] chr2 (13 HSPs)
chr2 (66-350)||(3156423-3156707)
chr2 (67-201)||(9428958-9429092)
chr2 (80-350)||(37983554-37983824)
chr2 (70-184)||(34664764-34664878)
chr2 (80-241)||(32487328-32487489)
chr2 (78-184)||(5539890-5539996)
chr2 (45-274)||(33412461-33412690)
chr2 (80-183)||(18696820-18696923)
chr2 (80-132)||(40990928-40990980)
chr2 (78-177)||(34352562-34352660)
chr2 (101-152)||(2760757-2760808)
chr2 (211-274)||(10206905-10206968)
chr2 (70-126)||(33840158-33840214)
[»] chr3 (4 HSPs)
chr3 (45-282)||(32516651-32516888)
chr3 (176-300)||(52344081-52344205)
chr3 (80-121)||(36730500-36730541)
chr3 (80-120)||(12949709-12949749)
[»] chr4 (7 HSPs)
chr4 (229-392)||(6516460-6516623)
chr4 (86-234)||(6510518-6510666)
chr4 (82-325)||(19497352-19497595)
chr4 (78-182)||(41482032-41482136)
chr4 (83-181)||(46219292-46219390)
chr4 (78-156)||(54824732-54824810)
chr4 (78-183)||(7704544-7704648)
[»] chr7 (7 HSPs)
chr7 (45-311)||(39709270-39709535)
chr7 (80-241)||(26159638-26159799)
chr7 (80-325)||(31395403-31395648)
chr7 (47-158)||(33999722-33999833)
chr7 (80-134)||(372307-372361)
chr7 (78-132)||(19480659-19480713)
chr7 (103-167)||(42776613-42776677)
[»] scaffold1185 (1 HSPs)
scaffold1185 (85-225)||(2004-2144)


Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 9595224 - 9594847
Alignment:
Q  16 atacaacaggtatgtgctgctcttaaaaaagcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  9595224 atacaacaggtatgtgctgctcttaaaaaagcaccataaaaaagttagagcaagttacacaggaacacccatataaagaggtgaatttttccaccaatca 9595125  T
Q  116 tgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaacttttt-cagctatagtagaagaatcacaagccatattt 214  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| | |||||||    
T  9595124 tgataactatagctaaaagatgtctgtgttgatttcagccacaagaaataatttagtttaacttttttcagctatagtagaagaatcacaggtcatattt 9595025  T
Q  215 tgaaacacacggttgtttctttccttctaaatagcccacacagtagcaaaccaaattactctcaagaatgaataagtgactctaggcaatacagccatat 314  Q
    || |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  9595024 tggaacacatggttgtttttttccttctaaatagcccacacagtagcaaaccaaattactctcaaaaatgaataagtgactctaggcaatacaaccatat 9594925  T
Q  315 tagtaaattgaagtaaatgttgtcgactgtcacctggaagcaccccagagagactcaaccagtgtaacacatgagtcc 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9594924 tagtaaattgaagtaaatgttgtcgactgtcacctggaagcaccccagagagactcaaccaatgtaacacatgagtcc 9594847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 39 - 304
Target Start/End: Original strand, 28569760 - 28570025
Alignment:
Q  39 taaaaaagcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgt 138  Q
    ||||| |||||||| ||||||||| ||||  ||| |||| ||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||| ||||     
T  28569760 taaaagagcaccatcaaaaagttaaagcagattatacagtaacacccatacaaaggagttgatgtttccaccagtcatgataactatagctaaatgatgc 28569859  T
Q  139 atgtgttgatttcagccacaagaaagaatttggtttaactttttcagctatagtagaagaatcacaagccatat-tttgaaacacacggttgtttctttc 237  Q
     |||| |||||||||| |||  ||||||||| |||||||||| || ||||  ||||||||||||||||| || | ||||||| |||||||||||||||||    
T  28569860 ctgtgatgatttcagcaacataaaagaatttagtttaactttgtcggctaaggtagaagaatcacaagctatgtctttgaaa-acacggttgtttctttc 28569958  T
Q  238 cttctaaatagcccacacagtagcaaaccaaattactctcaagaatgaataagtgactctaggcaat 304  Q
    |||| ||| | |||| ||||||||||||||||||| | ||||||| || | |||| || ||||||||    
T  28569959 cttcaaaaaaacccaaacagtagcaaaccaaattattttcaagaaagagtgagtggctttaggcaat 28570025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 80 - 387
Target Start/End: Complemental strand, 12238219 - 12237912
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaa---tttggtttaa 176  Q
    |||||||| ||| |||||||||||||||||||||||| |||| |||| || |||||||| || | |  |||||||||||| ||| ||   ||  ||||||    
T  12238219 acacccatgcaaggaagtggatttttccaccaatcattataattatatctgaaagatgtctgagatactttcagccacaaaaaaaaaaaattaagtttaa 12238120  T
Q  177 ctttttcagctatagtagaagaatcacaagccatattttgaaacacacggttgtttctttccttctaaatagcccacacagtagcaaaccaaattactct 276  Q
     | |||| || | ||  ||||||||||||||||  ||||| ||||| ||  | |||||||||||| ||||| ||||||||||| |||||||||||| | |    
T  12238119 ttatttcggccaaagaggaagaatcacaagccacgttttggaacacgcgactatttctttccttccaaataacccacacagtaacaaaccaaattatttt 12238020  T
Q  277 caagaatgaataagtgactctaggcaatacagccatattagtaaattgaagtaaatgttgtcgactgtcacctggaagcaccccagagagactcaaccag 376  Q
    |||||| || ||||||||  |||| ||   | ||||||||||||||||||| |||||||| |||||| |||||||||||||| ||||||||| ||||||     
T  12238019 caagaaagagtaagtgaccttaggtaa---acccatattagtaaattgaagcaaatgttgacgactgacacctggaagcaccacagagagacccaaccat 12237923  T
Q  377 tgtaacacatg 387  Q
    |||||||||||    
T  12237922 tgtaacacatg 12237912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 45 - 282
Target Start/End: Complemental strand, 26103079 - 26102842
Alignment:
Q  45 agcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgt 144  Q
    |||||||| ||||||||| || || |||||||  ||||||||| ||| | | ||||| ||| ||||| ||||||||| || |  ||||| |||| ||||     
T  26103079 agcaccatcaaaaagttaaagaaaattacacaataacacccatgcaagggaatggatgttttcaccactcatgataattaaatataaaaaatgtctgtga 26102980  T
Q  145 tgatttcagccacaagaaagaatttggtttaactttttcagctatagtagaagaatcacaagccatattttgaaacacacggttgtttctttccttctaa 244  Q
    |||||| |||||||  || | |||| | || ||||||||||||| |||||| |||||| ||||| ||| ||| ||||||| |||||||||||||||  ||    
T  26102979 tgattttagccacataaatggatttagcttcactttttcagctaaagtagacgaatcaaaagccgtatcttggaacacacagttgtttctttcctttcaa 26102880  T
Q  245 atagcccacacagtagcaaaccaaattactctcaagaa 282  Q
    | ||| || |||| ||||||||| |||||| |||||||    
T  26102879 acagctcaaacagaagcaaaccagattactttcaagaa 26102842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 246
Target Start/End: Original strand, 36419295 - 36419462
Alignment:
Q  79 aacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaact 178  Q
    ||||||||| ||  ||||||| | ||||||||| |||| ||||  |||  |||||||| |||| | ||||||||||||||  || || ||  | || |||    
T  36419295 aacacccatgcagggaagtgggtgtttccaccagtcataataagaataaataaaagatatatgcgatgatttcagccacataaacgagttcagcttcact 36419394  T
Q  179 ttttcagctatagtagaagaatcacaagccatattttgaaacacacggttgtttctttccttctaaat 246  Q
    |||||||||| || ||||| ||||||| || | | ||| ||||||||||| |||||||||||| ||||    
T  36419395 ttttcagctaaagaagaaggatcacaaaccgtttcttggaacacacggttatttctttccttccaaat 36419462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 35077569 - 35077517
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaa 132  Q
    |||||||||||||| || ||||  |||||||| ||||||||||| ||||||||    
T  35077569 acacccatacaaaggagaggatgattccaccagtcatgataactgtagctaaa 35077517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 39366253 - 39366201
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaa 132  Q
    ||||||||||||||||| ||||  |||||||| ||||| ||||| ||||||||    
T  39366253 acacccatacaaagaaggggatgattccaccagtcatggtaactgtagctaaa 39366201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 41388351 - 41388431
Alignment:
Q  103 tttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactttttc 183  Q
    |||||| |||||||||||| |  | ||||||| ||| ||| ||||||||| ||| | |||||||||| | |||||||||||    
T  41388351 tttccatcaatcatgataagtggaactaaaagctgtctgttttgatttcaaccaaaggaaagaatttagcttaactttttc 41388431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 39 - 301
Target Start/End: Original strand, 12691861 - 12692122
Alignment:
Q  39 taaaaaagcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgt 138  Q
    |||||||||||||  ||||||| ||| ||| ||||||| |||||||||||||||| ||||||| ||||||||  |||||||||||||||||||||| |||    
T  12691861 taaaaaagcaccagcaaaaagtgaga-caaattacacaagaacacccatacaaaggagtggatgtttccaccggtcatgataactatagctaaaagttgt 12691959  T
Q  139 atgtgttgatttcagccacaagaaagaatttggtttaactttttcagctatagtagaagaatcacaagccatattttgaaacacacggttgtttctttcc 238  Q
     ||| | |||||||||||||||||||||||   ||| | |||||| |||||| ||||||||||| || || |||||| ||| |||||||||||||||||     
T  12691960 ctgtttagatttcagccacaagaaagaattcaattttattttttccgctataatagaagaatcagaaaccgtattttaaaatacacggttgtttctttct 12692059  T
Q  239 ttctaaatagcccacacagtagcaaaccaaattactctcaagaatgaataagtgactctaggc 301  Q
     || |||||||||| | || | |||| ||||||| ||||||||||||   |||||||||||||    
T  12692060 ctccaaatagcccaaaaagaaacaaatcaaattattctcaagaatgagcgagtgactctaggc 12692122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 70 - 279
Target Start/End: Original strand, 13094864 - 13095073
Alignment:
Q  70 ttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaattt 169  Q
    |||||||  ||||||||| ||| | ||| ||| ||||||||| |||||||||  |||  |||||||||| |||| |||||||||||||| ||||||||||    
T  13094864 ttacacaataacacccatgcaagggagtagatgtttccaccagtcatgataatcatatataaaagatgtctgtgatgatttcagccacatgaaagaattt 13094963  T
Q  170 ggtttaactttttcagctatagtagaagaatcacaagccatattttgaaacacacggttgtttctttccttctaaatagcccacacagtagcaaaccaaa 269  Q
     | || ||||||||||||| ||||||||||||||||| | ||| ||| || |||||||||||||||||||||||||||| ||| || | |||||||||||    
T  13094964 agattcactttttcagctaaagtagaagaatcacaagtcgtatcttggaaaacacggttgtttctttccttctaaatagtccaaacggaagcaaaccaaa 13095063  T
Q  270 ttactctcaa 279  Q
    ||||| ||||    
T  13095064 ttactgtcaa 13095073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 80 - 350
Target Start/End: Original strand, 14392275 - 14392545
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactt 179  Q
    |||| ||||||||| || | || ||||||||  ||||||||||||||||||||||    |||| || ||||||||| |||||| || ||| |||||||||    
T  14392275 acactcatacaaaggagagaatgtttccaccgttcatgataactatagctaaaagtcacatgttttaatttcagccgcaagaatgagtttagtttaactt 14392374  T
Q  180 tttcagctatagtagaagaatcacaagccatattttgaaacacacggttgtttctttccttctaaatagcccacacagtagcaaaccaaattactctcaa 279  Q
    ||||| ||| | ||||||||| | ||||| ||||||| || ||| | || |  ||||||||| |||   | || |||| |||||||||||||| |||||     
T  14392375 tttcaactagaatagaagaattagaagccgtattttggaagacatgattatccctttccttccaaagtactcaaacagaagcaaaccaaattattctcag 14392474  T
Q  280 gaatgaataagtgactctaggcaatacagccatattagtaaattgaagtaaatgttgtcgactgtcacctg 350  Q
    ||| |||| ||||| |||||||||  | |||||||||||||| ||||| ||||| |||||| |||||||||    
T  14392475 gaaggaatgagtgaatctaggcaaacccgccatattagtaaactgaaggaaatgatgtcgaatgtcacctg 14392545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 94 - 350
Target Start/End: Original strand, 2820848 - 2821104
Alignment:
Q  94 aagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactttttcagctatagta 193  Q
    |||||| | ||||||||  |||||||||||||||||||||| ||| | ||  ||||||||||||||||||||||    ||||||||||| ||||| | ||    
T  2820848 aagtgggtgtttccacctgtcatgataactatagctaaaagttgtctctgaagatttcagccacaagaaagaatccaatttaacttttttagctagaata 2820947  T
Q  194 gaagaatcacaagccatattttgaaacacacggttgtttctttccttctaaatagcccacacagtagcaaaccaaattactctcaagaatgaataagtga 293  Q
    |||||||| | |||| || |||| || |||  ||||||||||||||||    ||| | | |||| |||||||||||||| || || |||||| | || ||    
T  2820948 gaagaatcgctagccgtagtttggaagacaaagttgtttctttccttccctttagacaaaacagaagcaaaccaaattattcgcatgaatgagtgagcga 2821047  T
Q  294 ctctaggcaatacagccatattagtaaattgaagtaaatgttgtcgactgtcacctg 350  Q
    ||||||| ||| | ||||||| ||||||||||| |||||| | || | |||||||||    
T  2821048 ctctaggaaatcctgccatatcagtaaattgaattaaatgatatctaatgtcacctg 2821104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 183
Target Start/End: Complemental strand, 32160269 - 32160164
Alignment:
Q  78 gaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaac 177  Q
    |||||||||||||||| || |||| |||||| ||||||||| | ||||| ||||||| ||| ||| ||||||||||||| ||  |||| ||| |||||||    
T  32160269 gaacacccatacaaaggagcggatgtttccatcaatcatgacatctataactaaaagttgtttgttttgatttcagccataaataagagtttagtttaac 32160170  T
Q  178 tttttc 183  Q
     |||||    
T  32160169 cttttc 32160164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 9580876 - 9580925
Alignment:
Q  84 ccatacaaagaagtggatttttccaccaatcatgataactatagctaaaa 133  Q
    ||||| ||||||| |||| |||||||||||||||||||||||||||||||    
T  9580876 ccatataaagaaggggatgtttccaccaatcatgataactatagctaaaa 9580925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 167
Target Start/End: Complemental strand, 14571007 - 14570918
Alignment:
Q  78 gaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaat 167  Q
    |||||||||||||||| ||||||||| |||||||||||| ||||| |||  || ||||| ||||  ||| ||||| |||||| |||||||    
T  14571007 gaacacccatacaaaggagtggatttgtccaccaatcataataacaataattagaagatatatgctttgctttcatccacaaaaaagaat 14570918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 12148244 - 12148340
Alignment:
Q  86 atacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaacttttt 182  Q
    ||||||||||| |  |||| ||||||||||||||||||||| |||||||  |  ||| ||||||||||||| || ||||| ||| ||||||| ||||    
T  12148244 atacaaagaagcgagttttcccaccaatcatgataactataactaaaagtcgcttgttttgatttcagccataaaaaagagtttagtttaacctttt 12148340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 9313306 - 9313266
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgata 120  Q
    |||| |||||||||||| ||||| |||||||||||||||||    
T  9313306 acactcatacaaagaaggggattattccaccaatcatgata 9313266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 19248585 - 19248625
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgata 120  Q
    ||||||||||| | |||||||| ||||||||||||||||||    
T  19248585 acacccatacacaaaagtggatgtttccaccaatcatgata 19248625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 79 - 349
Target Start/End: Complemental strand, 25721310 - 25721040
Alignment:
Q  79 aacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaact 178  Q
    ||||||||||||  | ||||||| ||||||||| ||||||||| |||||||||| ||||  ||| ||||||||| |||||  ||||||| |  |||||||    
T  25721310 aacacccatacatgggagtggatgtttccaccagtcatgataagtatagctaaatgatggttgtattgatttcaaccacataaaagaatctaatttaact 25721211  T
Q  179 ttttcagctatagtagaagaatcacaagccatat-tttgaaacacacggttgtttctttccttctaaatagcccacacagtagcaaaccaaattactctc 277  Q
    || |||||||  | ||||| |||| |||| |  | ||||||| ||||| ||||||||||||||| |||||||||| |||| |||||||||||||| | ||    
T  25721210 ttatcagctaaggaagaaggatcataagctaactctttgaaa-acacgattgtttctttccttccaaatagcccaaacagaagcaaaccaaattattttc 25721112  T
Q  278 aagaatgaataagtgactctaggcaatacagccatattagtaaattgaagtaaatgttgtcgactgtcacct 349  Q
    |  |  |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||    
T  25721111 agaagagaatgagtgactctaggcaatacggccatattagtaaattgaagcaaatgttgtcgaatgtcacct 25721040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 43 - 248
Target Start/End: Original strand, 43799523 - 43799730
Alignment:
Q  43 aaagcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaaga--tgtat 140  Q
    |||||||||  ||||||||| | ||| ||| ||| |||| | ||||||| | ||| ||| ||||||||  ||||| |||||||||||||||||  ||  |    
T  43799523 aaagcaccagcaaaaagttaaaacaaattatacatgaactctcatacaagggagtagatgtttccacccgtcatggtaactatagctaaaagagttgctt 43799622  T
Q  141 gtgttgatttcagccacaagaaagaatttggtttaactttttcagctatagtagaagaatcacaagccatattttgaaacacacggttgtttctttcctt 240  Q
    || | |||||||||||||||||| ||||   ||||||||||||||||| | ||||||||||| ||||| ||||||  || ||||||||||||||||||||    
T  43799623 gtttagatttcagccacaagaaataattcattttaactttttcagctagaatagaagaatcaaaagccgtattttagaatacacggttgtttctttcctt 43799722  T
Q  241 ctaaatag 248  Q
    | ||||||    
T  43799723 ccaaatag 43799730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 45 - 304
Target Start/End: Original strand, 12677588 - 12677847
Alignment:
Q  45 agcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgt 144  Q
    |||||||||||||||||| || || |||||||  ||||||||| ||| ||| ||| | ||||||||| |||| ||||  |||  ||||||||||||| |     
T  12677588 agcaccataaaaaagttacagaaaattacacaataacacccatgcaaggaattgggtgtttccaccagtcataataagaataaataaaagatgtatgcga 12677687  T
Q  145 tgatttcagccacaagaaagaatttggtttaactttttcagctatagtagaagaatcacaagccatattttgaaacacacggttgtttctttccttctaa 244  Q
    || |||||||||||  ||||| ||  | || ||||||||||||| || ||||| ||||||| || | | ||| |||||| |||| |||||||||||| ||    
T  12677688 tgctttcagccacataaaagagttcagcttcactttttcagctaaagaagaaggatcacaaaccgtttcttggaacacatggttatttctttccttccaa 12677787  T
Q  245 atagcccacacagtagcaaaccaaattactctcaagaatgaataagtgactctaggcaat 304  Q
    |||||||| |||  ||| ||||| |||||| ||| |||  ||| |||| |||||||||||    
T  12677788 atagcccaaacataagcgaaccagattactttcaggaaataatgagtggctctaggcaat 12677847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 80 - 183
Target Start/End: Original strand, 31136074 - 31136177
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactt 179  Q
    ||||||||||||||||| || ||||||||||||||||||||||| || |||||||     ||| ||||||||||||| || ||||| ||| ||||||| |    
T  31136074 acacccatacaaagaagcgggtttttccaccaatcatgataactgtaactaaaagtcacctgttttgatttcagccataaaaaagagtttagtttaacct 31136173  T
Q  180 tttc 183  Q
    ||||    
T  31136174 tttc 31136177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 40219932 - 40219879
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaa 133  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||||| ||||    
T  40219932 acacccatacaaagaatgggattttgccaccaatcatgataactatagccaaaa 40219879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 19298095 - 19298017
Alignment:
Q  78 gaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagcca 156  Q
    |||||||||| || | ||| |||| ||||||||||||||||||||| |||||||| ||  | ||| | |||||||||||    
T  19298095 gaacacccatgcacaaaagcggatgtttccaccaatcatgataactgtagctaaatgacatctgtttcgatttcagcca 19298017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 33154889 - 33154804
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaaga 165  Q
    ||||||||||||  |||||||| | |||||||||||||||||| ||| | ||| ||||| ||| | | ||||| |||||| |||||    
T  33154889 acacccatacaagaaagtggatgtctccaccaatcatgataacaataacaaaaggatgtctgtttagctttcaaccacaaaaaaga 33154804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 9991364 - 9991324
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgata 120  Q
    ||||||||||||||||| || | ||||||||||||||||||    
T  9991364 acacccatacaaagaagcgggtgtttccaccaatcatgata 9991324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 198 - 387
Target Start/End: Complemental strand, 18715152 - 18714966
Alignment:
Q  198 aatcacaagccatattttgaaacacacggttgtttctttccttctaaatagcccacacagtagcaaaccaaattactctcaagaatgaataagtgactct 297  Q
    ||||||||||   |||||| ||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| | |||||   || || ||| ||||    
T  18715152 aatcacaagcttcattttggaacacacagttgtttctttccttccaaatagcccacacggtagcaaaccaaattattttcaag---gagtaggtggctct 18715056  T
Q  298 aggcaatacagccatattagtaaattgaagtaaatgttgtcgactgtcacctggaagcaccccagagagactcaaccagtgtaacacatg 387  Q
    |||||||  |||||||||||||||||||||||||||||||||||| |||||||| |||||| |||| |||| || ||| |||||||||||    
T  18715055 aggcaatctagccatattagtaaattgaagtaaatgttgtcgactttcacctgggagcaccgcagaaagacccatccaatgtaacacatg 18714966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 113 - 326
Target Start/End: Complemental strand, 24662657 - 24662444
Alignment:
Q  113 tcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactttttcagctatagtagaagaatcacaagccatat 212  Q
    |||| ||||||||| |||||  | || |||| ||||||||||||||||||||| ||| |||||||||||||| ||||  |||||||||||||  |||| |    
T  24662657 tcataataactataactaaacaacgtttgtgatgatttcagccacaagaaagattttagtttaactttttcaactattatagaagaatcacacaccatgt 24662558  T
Q  213 tttgaaacacacggttgtttctttccttctaaatagcccacacagtagcaaaccaaattactctcaagaatgaataagtgactctaggcaatacagccat 312  Q
    ||||||| |||||||| ||||||||||||||||||| ||| | || |||||||||||||| | |||| || || |||||| ||||||||| | | |||||    
T  24662557 tttgaaaaacacggttatttctttccttctaaatagtccaaatagaagcaaaccaaattattttcaaaaaagagtaagtggctctaggcagtcctgccat 24662458  T
Q  313 attagtaaattgaa 326  Q
     |||||||||||||    
T  24662457 gttagtaaattgaa 24662444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 79 - 326
Target Start/End: Complemental strand, 16587728 - 16587481
Alignment:
Q  79 aacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaact 178  Q
    ||||||| ||||||| ||| ||| ||||||||| || |||||| |||||||||||| ||| ||| | |||||||||||||||||| ||||  |||||| |    
T  16587728 aacacccttacaaaggagttgatgtttccaccagtcgtgataattatagctaaaagttgtctgtttagatttcagccacaagaaataattcagtttaatt 16587629  T
Q  179 ttttcagctatagtagaagaatcacaagccatattttgaaacacacggttgtttctttccttctaaatagcccacacagtagcaaaccaaattactctca 278  Q
    |||||||||| | ||||||||  | ||||| ||||||| || |||||||| |||||||||||| || |||| || |||| || ||||||||||| ||  |    
T  16587628 ttttcagctagaatagaagaagtagaagccgtattttggaatacacggttatttctttccttccaattagctcaaacagaagaaaaccaaattattcata 16587529  T
Q  279 agaatgaataagtgactctaggcaatacagccatattagtaaattgaa 326  Q
    ||||||| | ||||||||||| |||  ||| |||||||||| ||||||    
T  16587528 agaatgagtgagtgactctagacaagccagtcatattagtatattgaa 16587481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 129 - 304
Target Start/End: Original strand, 750475 - 750650
Alignment:
Q  129 taaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactttttcagctatagtagaagaatcacaagccatattttgaaacacacggtt 228  Q
    |||||||||| || | ||||||||||||||  ||||| ||  | || ||||||||||||| ||||||||||||||||||| | | ||| |||||||||||    
T  750475 taaaagatgtctgcgatgatttcagccacataaaagagttcagcttcactttttcagctaaagtagaagaatcacaagccgtttcttggaacacacggtt 750574  T
Q  229 gtttctttccttctaaatagcccacacagtagcaaaccaaattactctcaagaatgaataagtgactctaggcaat 304  Q
    |||||||| |||| |||||||||| |||| ||| || || |||||| |||||||  ||| |||| |||||||||||    
T  750575 gtttcttttcttccaaatagcccaaacagaagcgaatcagattactttcaagaaataatgagtggctctaggcaat 750650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 36 - 136
Target Start/End: Complemental strand, 18715264 - 18715164
Alignment:
Q  36 tcttaaaaaagcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaaga 135  Q
    |||||| |||||||||  ||| ||||| ||  | |||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||  |||||||    
T  18715264 tcttaataaagcaccaggaaagagttatagtcaattacacagtaacatccatacaaggaagtggatttttccaccaatcatgataactataattaaaaga 18715165  T
Q  136 t 136  Q
    |    
T  18715164 t 18715164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 10491339 - 10491282
Alignment:
Q  210 tattttgaaacacacggttgtttctttccttctaaatagcccacacagtagcaaacca 267  Q
    ||||||| || |||||||| || ||||||||| |||||||||| ||||||||||||||    
T  10491339 tattttggaatacacggttattcctttccttccaaatagcccaaacagtagcaaacca 10491282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 10608325 - 10608272
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaa 133  Q
    |||||||||||||  || |||| |||||||||||||| ||||||||| ||||||    
T  10608325 acacccatacaaaagagcggatgtttccaccaatcataataactataactaaaa 10608272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 66 - 350
Target Start/End: Complemental strand, 3156707 - 3156423
Alignment:
Q  66 caagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaaga 165  Q
    ||||||| |||| ||| | |||||| |||||||||| ||||||||||| |||| ||||||||||||| |  | |||| | ||||||||||||||||||||    
T  3156707 caagttagacagaaactctcatacacagaagtggatgtttccaccaattatgaaaactatagctaaaggcggcatgtttagatttcagccacaagaaaga 3156608  T
Q  166 atttggtttaactttttcagctatagtagaagaatcacaagccatattttgaaacacacggttgtttctttccttctaaatagcccacacagtagcaaac 265  Q
     ||    ||||| |||||||||| | ||||||||||  |  || ||||||| || ||| |||||||  |||||||| ||||||| || ||||||||||||    
T  3156607 gttcaacttaaccttttcagctaaaatagaagaatctgagaccgtattttggaatacatggttgttcatttccttccaaatagcacaaacagtagcaaac 3156508  T
Q  266 caaattactctcaagaatgaataagtgactctaggcaatacagccatattagtaaattgaagtaaatgttgtcgactgtcacctg 350  Q
    ||||| | | ||||||| || | |||||||||||||||| | | ||  ||||||||||||   ||||| |||||| |||||||||    
T  3156507 caaataattgtcaagaaagattgagtgactctaggcaatcctgtcaatttagtaaattgagtaaaatgatgtcgaatgtcacctg 3156423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 67 - 201
Target Start/End: Complemental strand, 9429092 - 9428958
Alignment:
Q  67 aagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaa 166  Q
    |||||||||  |||| ||||||||| ||||||||| ||||||||  |||||||||||||||| |||||||| |||||||||||||||||| |||||||||    
T  9429092 aagttacacctgaactcccatacaaggaagtggatgtttccacccgtcatgataactatagcgaaaagatgcatgtgttgatttcagccataagaaagaa 9428993  T
Q  167 tttggtttaactttttcagctatagtagaagaatc 201  Q
    ||| |||||||||||| ||||| | ||||||||||    
T  9428992 tttagtttaactttttgagctagaatagaagaatc 9428958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 80 - 350
Target Start/End: Original strand, 37983554 - 37983824
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactt 179  Q
    |||| ||||||||| || |||| |||||||||||||||||||||||||||||| |  |  | | ||||||||| |||||||||||| ||   |||||| |    
T  37983554 acactcatacaaaggagaggatgtttccaccaatcatgataactatagctaaatgtcgcctattttgatttcaaccacaagaaagagttcaatttaacct 37983653  T
Q  180 tttcagctatagtagaagaatcacaagccatattttgaaacacacggttgtttctttccttctaaatagcccacacagtagcaaaccaaattactctcaa 279  Q
    |||||  || | ||||||||| | ||| | ||||||| || | |||||| || |||| |||| ||| | || | |||| |||||||||||||| ||| |     
T  37983654 tttcaattagaatagaagaattagaagtcgtattttggaagatacggttattccttttcttccaaagaacctaaacagaagcaaaccaaattattcttag 37983753  T
Q  280 gaatgaataagtgactctaggcaatacagccatattagtaaattgaagtaaatgttgtcgactgtcacctg 350  Q
    ||| |||| ||||| |||||||||  | |||||||||||||| ||||| ||||| |||||| |||||||||    
T  37983754 gaaggaatgagtgaatctaggcaaacccgccatattagtaaactgaaggaaatgatgtcgaatgtcacctg 37983824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 70 - 184
Target Start/End: Original strand, 34664764 - 34664878
Alignment:
Q  70 ttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaattt 169  Q
    |||||||  |||||||||||||  || |||||||||||| || |||||||||||||||||||||||||| ||   || ||| ||||||||||||||||||    
T  34664764 ttacacacaaacacccatacaagaaattggatttttccatcattcatgataactatagctaaaagatgtctgaaatgcttttagccacaagaaagaattt 34664863  T
Q  170 ggtttaactttttca 184  Q
      ||||||| |||||    
T  34664864 aatttaactatttca 34664878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 241
Target Start/End: Original strand, 32487328 - 32487489
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactt 179  Q
    |||||||||||||  || |||| ||| ||||||||||||||||| ||| |||| ||   |||| ||||||||||||||||||| |||||| | |||||||    
T  32487328 acacccatacaaatgagcggatgtttgcaccaatcatgataactgtagttaaatgacacatgttttgatttcagccacaagaatgaatttagcttaactt 32487427  T
Q  180 tttcagctatagtagaagaatcacaagccatattttgaaacacacggttgtttctttccttc 241  Q
    |||||   ||| |||||| || | ||||| ||||||||||  ||| ||| || |||||||||    
T  32487428 tttcaatgataatagaaggattagaagccgtattttgaaaggcacagttattcctttccttc 32487489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 5539996 - 5539890
Alignment:
Q  78 gaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaac 177  Q
    ||||| ||||||||||||| |||| ||||||||| ||||||||| |||||||||| ||    ||| ||||||||| |||||||||  ||||||| |||||    
T  5539996 gaacatccatacaaagaagcggatgtttccaccagtcatgataattatagctaaaggacacctgttttgatttcaaccacaagaataaatttggcttaac 5539897  T
Q  178 tttttca 184  Q
    |||||||    
T  5539896 tttttca 5539890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 274
Target Start/End: Complemental strand, 33412690 - 33412461
Alignment:
Q  45 agcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgt 144  Q
    |||||||||||||||||| |  || |||||||  ||||||||| ||| | | ||| | ||||||||| |||| ||||  |||  | |||||||| || |     
T  33412690 agcaccataaaaaagttacataaaattacacaataacacccatgcaagggattgggtgtttccaccagtcataataagaataaatcaaagatgtttgcga 33412591  T
Q  145 tgatttcagccacaagaaagaatttggtttaactttttcagctatagtagaagaatcacaagccatattttgaaacacacggttgtttctttccttctaa 244  Q
    ||||||||||||||  ||||| ||  | || | || |||||||| || ||||| |||| || || | | ||| ||||||||||| |||||||||||| ||    
T  33412590 tgatttcagccacataaaagagttcagcttcaattcttcagctaaagaagaaggatcataaaccgtttcttggaacacacggttatttctttccttcgaa 33412491  T
Q  245 atagcccacacagtagcaaaccaaattact 274  Q
    || ||||| |||| ||| ||||| ||||||    
T  33412490 atggcccaaacagaagcgaaccagattact 33412461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 183
Target Start/End: Original strand, 18696820 - 18696923
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactt 179  Q
    ||||||||||||||||| || ||||||||||||||||||||| | ||  ||||||    |||| ||||||||||||| || ||||| ||| ||||||| |    
T  18696820 acacccatacaaagaagcgggtttttccaccaatcatgataagtgtaaataaaagtcacatgttttgatttcagccataaaaaagagtttagtttaacct 18696919  T
Q  180 tttc 183  Q
    ||||    
T  18696920 tttc 18696923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 40990980 - 40990928
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaa 132  Q
    |||||||||||||| ||||||| |||||||||||| | |||||||||||||||    
T  40990980 acacccatacaaaggagtggatgtttccaccaatcgtaataactatagctaaa 40990928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 177
Target Start/End: Original strand, 34352562 - 34352660
Alignment:
Q  78 gaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaac 177  Q
    |||||| |||||||||||| ||||  |||||| |||||||||||||||||||||| |    |||| ||| ||||||||| |||||||||||  |||||||    
T  34352562 gaacactcatacaaagaagcggatgcttccac-aatcatgataactatagctaaatgtcacatgttttgctttcagccataagaaagaattgagtttaac 34352660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 2760808 - 2760757
Alignment:
Q  101 tttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttca 152  Q
    ||||||||||||||||||||||| || ||||||| ||| ||| |||||||||    
T  2760808 tttttccaccaatcatgataactgtaactaaaagctgtctgttttgatttca 2760757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 274
Target Start/End: Original strand, 10206905 - 10206968
Alignment:
Q  211 attttgaaacacacggttgtttctttccttctaaatagcccacacagtagcaaaccaaattact 274  Q
    |||||| |||||||||||||| ||||||||| |||   |||| |||| ||||||||||||||||    
T  10206905 attttggaacacacggttgttcctttccttccaaagcacccaaacagaagcaaaccaaattact 10206968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 33840214 - 33840158
Alignment:
Q  70 ttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactata 126  Q
    ||||||| | |||| |||||| |||||||||| ||||||| |||| |||||||||||    
T  33840214 ttacacatggacactcatacagagaagtggatatttccactaatcgtgataactata 33840158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 45 - 282
Target Start/End: Original strand, 32516651 - 32516888
Alignment:
Q  45 agcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgt 144  Q
    |||||||| || |||||||||||  |||||||  ||||||||||||| | ||||||| ||| ||||| |||||||||  |||  ||||||||||  |||     
T  32516651 agcaccatcaagaagttagagcacattacacaataacacccatacaagggagtggatgttttcaccagtcatgataatcatatataaaagatgtcagtga 32516750  T
Q  145 tgatttcagccacaagaaagaatttggtttaactttttcagctatagtagaagaatcacaagccatattttgaaacacacggttgtttctttccttctaa 244  Q
    ||| |||||||||| |||||||||| |||| ||||||||| ||| ||||||||| ||||||||  ||| ||| || | || |||||||||||||||| |     
T  32516751 tgacttcagccacatgaaagaatttagtttcactttttcaactaaagtagaagagtcacaagctgtatcttggaagatacagttgtttctttccttccag 32516850  T
Q  245 atagcccacacagtagcaaaccaaattactctcaagaa 282  Q
    ||||| || || | |||||||||||||||  |||||||    
T  32516851 atagctcaaaccgaagcaaaccaaattacagtcaagaa 32516888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 52344081 - 52344205
Alignment:
Q  176 actttttcagctatagtagaagaatcacaagccatattttgaaacacacggttgtttctttccttctaaatagcccacacagtagcaaaccaaattactc 275  Q
    ||||||||||||| || ||||| || |||| || | | ||  ||||||||||| |||||||||||| ||||  |||| |||| ||||||||| ||||||     
T  52344081 actttttcagctaaagaagaaggattacaaaccgtttcttagaacacacggttatttctttccttccaaatgacccaaacagaagcaaaccagattactt 52344180  T
Q  276 tcaagaatgaataagtgactctagg 300  Q
    ||| |||  ||| |||| |||||||    
T  52344181 tcaggaaataatgagtggctctagg 52344205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 36730500 - 36730541
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgataa 121  Q
    |||||||||||||||||  | |||||||||||||||||||||    
T  36730500 acacccatacaaagaagcaggtttttccaccaatcatgataa 36730541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 12949709 - 12949749
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgata 120  Q
    ||||||||||||||||| || | ||||||||||||||||||    
T  12949709 acacccatacaaagaagcgggtgtttccaccaatcatgata 12949749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 229 - 392
Target Start/End: Original strand, 6516460 - 6516623
Alignment:
Q  229 gtttctttccttctaaatagcccacacagtagcaaaccaaattactctcaagaatgaataagtgactctaggcaatacagccatattagtaaattgaagt 328  Q
    ||||||||||||| |||| ||||| || |||||||||||||||| | ||| ||| | ||| ||||||||||| ||  ||||||||||||||||||  |||    
T  6516460 gtttctttccttccaaatggcccaaactgtagcaaaccaaattattttcatgaaaggatatgtgactctaggtaaaccagccatattagtaaattttagt 6516559  T
Q  329 aaatgttgtcgactgtcacctggaagcaccccagagagactcaaccagtgtaacacatgagtcc 392  Q
    |||||||||||||| |||| ||| |||||| |||||| || |||||| |  |||||||||||||    
T  6516560 aaatgttgtcgactatcacatgggagcaccgcagagatacccaaccaattcaacacatgagtcc 6516623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 86 - 234
Target Start/End: Original strand, 6510518 - 6510666
Alignment:
Q  86 atacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactttttcag 185  Q
    |||||| | |||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||||| |||||  |||||| |||||||    
T  6510518 atacaaggtagtgaatttttccaccagtcatgataactatagctaaaagatgtctctgttgatttcaaccacaagaaataatttaatttaaccttttcag 6510617  T
Q  186 ctatagtagaagaatcacaagccatattttgaaacacacggttgtttct 234  Q
    |||||| |||   |||| | |||  |||||||||||| | |||||||||    
T  6510618 ctatagaagagagatcagatgccgcattttgaaacacgcagttgtttct 6510666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 325
Target Start/End: Original strand, 19497352 - 19497595
Alignment:
Q  82 acccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactttt 181  Q
    ||||||||||||||| |||| |||| ||||||||||||| || || ||||| |  || ||| || |||||||||| || ||||| |   ||||||| |||    
T  19497352 acccatacaaagaagcggatgtttctaccaatcatgatagctgtaactaaatgtcgtctgtttttatttcagccataaaaaagagtagagtttaaccttt 19497451  T
Q  182 tcagctatagtagaagaatcacaagccatattttgaaacacacggttgtttctttccttctaaatagcccacacagtagcaaaccaaattactctcaaga 281  Q
    ||    | | | ||||||| | ||||||| ||||| || |||||||  || ||||||||| ||||| |||| | ||  ||||||||||| ||| | ||||    
T  19497452 tcgataagaattgaagaattagaagccatgttttggaatacacggtgattcctttccttccaaataacccaaatagaggcaaaccaaatgactgtgaaga 19497551  T
Q  282 atgaataagtgactctaggcaatacagccatattagtaaattga 325  Q
    |||||| ||||| |||||||||  | ||| ||||||||| ||||    
T  19497552 atgaatgagtgaatctaggcaaccccgccgtattagtaacttga 19497595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 41482032 - 41482136
Alignment:
Q  78 gaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaac 177  Q
    |||| |||||||| || || || | ||||||||||||||||||||| || ||||||  || |||| ||||||||||||| |  ||||||||| | |||||    
T  41482032 gaacgcccatacacaggagagggtgtttccaccaatcatgataactgtaactaaaaattgcatgttttgatttcagccaaagaaaagaatttagcttaac 41482131  T
Q  178 ttttt 182  Q
    |||||    
T  41482132 ttttt 41482136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 46219390 - 46219292
Alignment:
Q  83 cccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactttt 181  Q
    |||||||||||||| ||||  |||||||| ||||| ||||| ||||||||  || |  || ||||||||| ||| |||||||| ||| |||||||||||    
T  46219390 cccatacaaagaaggggatgattccaccactcatggtaactgtagctaaataatctcggttttgatttcaaccataagaaagagtttagtttaactttt 46219292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 54824732 - 54824810
Alignment:
Q  78 gaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagcca 156  Q
    |||||||||| || | ||| |||| ||||||||||||||||||||| |||||||| ||  | ||| | |||||||||||    
T  54824732 gaacacccatgcacaaaagcggatgtttccaccaatcatgataactgtagctaaatgacatctgtttcgatttcagcca 54824810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 7704544 - 7704648
Alignment:
Q  78 gaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaac 177  Q
    ||||||||||||| ||||| |  |||||||| || ||||||||||||||   |||||||| |||| ||||||||| ||| || |||||| |  |||||||    
T  7704544 gaacacccatacagagaagagt-tttttccatcagtcatgataactataagaaaaagatgcatgttttgatttcaaccataaaaaagaagtcagtttaac 7704642  T
Q  178 tttttc 183  Q
     |||||    
T  7704643 cttttc 7704648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 45 - 311
Target Start/End: Original strand, 39709270 - 39709535
Alignment:
Q  45 agcaccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgt 144  Q
    |||||| ||||||||||| || || ||||||   ||||||||| ||| | ||||||| ||||||||| |||| |||| || |  |||||||| | || |     
T  39709270 agcaccgtaaaaaagttatagaaaattacacgataacacccatgcaagggagtggatgtttccaccagtcataataagtaaaa-taaaagatatctgcga 39709368  T
Q  145 tgatttcagccacaagaaagaatttggtttaactttttcagctatagtagaagaatcacaagccatattttgaaacacacggttgtttctttccttctaa 244  Q
    |||||||| | |||  ||||| ||    || ||||||||||||| ||||||||||||||||||| ||| ||| |||||||  || |||||||| ||| ||    
T  39709369 tgatttcaactacataaaagagttcatcttcactttttcagctaaagtagaagaatcacaagccgtatcttggaacacacaattatttctttcattccaa 39709468  T
Q  245 atagcccacacagtagcaaaccaaattactctcaagaatgaataagtgactctaggcaatacagcca 311  Q
    |||||||| |||| ||| ||||| |||||| |||| ||  ||| |||| ||||||||||| ||||||    
T  39709469 atagcccaaacagaagcgaaccagattactttcaaaaaataatgagtggctctaggcaatccagcca 39709535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 241
Target Start/End: Complemental strand, 26159799 - 26159638
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactt 179  Q
    ||||||||| |||| || |||| ||||||||| |||||||||||||| ||||| ||   ||||  |||||||| ||||||||| |||||| | |||||||    
T  26159799 acacccatataaaggagcggatgtttccaccagtcatgataactataactaaatgacacatgttatgatttcaaccacaagaatgaatttagcttaactt 26159700  T
Q  180 tttcagctatagtagaagaatcacaagccatattttgaaacacacggttgtttctttccttc 241  Q
    |||||   | | |||||| || | ||||| |||||||||| |||   || ||||||||||||    
T  26159699 tttcaatgagaatagaaggattagaagccttattttgaaagacaaatttatttctttccttc 26159638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 325
Target Start/End: Original strand, 31395403 - 31395648
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactt 179  Q
    ||||||||||||||||| || | |||||||||||| ||||| || || ||||| |  |  ||| ||||||||||||| || ||||| |   ||||||| |    
T  31395403 acacccatacaaagaagcgggtgtttccaccaatcgtgatagctgtaactaaatgtcgcctgttttgatttcagccataaaaaagagtagagtttaacct 31395502  T
Q  180 tttcagctatagtagaagaatcacaagccatattttgaaacacacggttgtttctttccttctaaatagcccacacagtagcaaaccaaattactctcaa 279  Q
    ||||    | | | ||||||| | ||||||| ||||| || |||||||  || ||||||||||||||| |||| | ||  ||||||||||| ||| | ||    
T  31395503 tttcgataagaattgaagaattagaagccatgttttggaatacacggtgattcctttccttctaaataacccaaatagaggcaaaccaaatgactgtgaa 31395602  T
Q  280 gaatgaataagtgactctaggcaatacagccatattagtaaattga 325  Q
    |||||||| ||||| |||||| ||  | |||||| |||||| ||||    
T  31395603 gaatgaatgagtgaatctagggaaccccgccatactagtaacttga 31395648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 33999833 - 33999722
Alignment:
Q  47 caccataaaaaagttagagcaagttacacaggaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttg 146  Q
    |||||||||||||||| || || ||||||   ||||||||| ||| | | ||||| |||||||  ||||| |||| || | ||||||||||| || | ||    
T  33999833 caccataaaaaagttatagaaaattacactataacacccatgcaagggattggatgtttccactgatcatcataagtaaaactaaaagatgtctgcgatg 33999734  T
Q  147 atttcagccaca 158  Q
    ||||||||||||    
T  33999733 atttcagccaca 33999722  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 372307 - 372361
Alignment:
Q  80 acacccatacaaagaagtggatttttccaccaatcatgataactatagctaaaag 134  Q
    |||||||||||||| ||||  |||||||||||||||||||| || || |||||||    
T  372307 acacccatacaaaggagtgagtttttccaccaatcatgatagctgtaactaaaag 372361  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 19480659 - 19480713
Alignment:
Q  78 gaacacccatacaaagaagtggatttttccaccaatcatgataactatagctaaa 132  Q
    ||||||||||||||||||| |||| ||||||||| ||||| ||||| || |||||    
T  19480659 gaacacccatacaaagaaggggatgtttccaccagtcatggtaactgtaactaaa 19480713  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 42776677 - 42776613
Alignment:
Q  103 tttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaat 167  Q
    |||||||||||||| ||||| |||||||||||||| |||| |||  ||||  ||||| |||||||    
T  42776677 tttccaccaatcataataacaatagctaaaagatggatgttttgccttcactcacaaaaaagaat 42776613  T

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Target: scaffold1185 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold1185
Description:

Target: scaffold1185; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 85 - 225
Target Start/End: Complemental strand, 2144 - 2004
Alignment:
Q  85 catacaaagaagtggatttttccaccaatcatgataactatagctaaaagatgtatgtgttgatttcagccacaagaaagaatttggtttaactttttca 184  Q
    ||||||||| || |||| ||||||||| ||||||||| ||||||||||||   ||||| ||||||||||||||||||| || ||| ||||||||||||||    
T  2144 catacaaaggagaggatgtttccaccattcatgataagtatagctaaaagtcatatgttttgatttcagccacaagaatgagtttagtttaactttttca 2045  T
Q  185 gctatagtagaagaatcacaagccatattttgaaacacacg 225  Q
     ||| | ||||||||| | ||||| ||| ||| || |||||    
T  2044 actagaatagaagaattagaagccgtatgttggaagacacg 2004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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