View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_low_47 (Length: 380)
Name: NF16378_low_47
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 48968471 - 48968663
Alignment:
| Q |
19 |
agactttgcttcagccattgccagcacacgcaatgccacataataagaatcggtcaaacagtagagtaggcaatccgcaaatgtagtgggaattagatac |
118 |
Q |
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| T |
48968471 |
agactttgcttcagccattgccagcacacgcaatgccacataataagaatcggtcaaacagtagagtaggcaatccgcaaatgtagtgggaattagatac |
48968570 |
T |
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| Q |
119 |
agcctcaacttccatgannnnnnngcttatacttaattaattataaaatttagcacctgtcaaaaatttacggtttacgtataacatttttgt |
211 |
Q |
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| T |
48968571 |
agcctcaacttccatgatttttttgcttatacttaattaattataaaatttagcacctgtcaaaaatttacggtttacgtataacatttttgt |
48968663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 263 - 370
Target Start/End: Original strand, 48968709 - 48968816
Alignment:
| Q |
263 |
catatctaacacgaaaatttcatatggaattcaaaattagaataatataagtcatgggaatagagatatccccaaagatattcttgtttgcatttcatat |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48968709 |
catatctaacacgaaaatttcatatggaattcaaaattagaataatataagtcatgggaatagagatatccccaaagatattcttgtttgcattttatat |
48968808 |
T |
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| Q |
363 |
tgttcatc |
370 |
Q |
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|||||||| |
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| T |
48968809 |
tgttcatc |
48968816 |
T |
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