View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_low_55 (Length: 349)
Name: NF16378_low_55
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 38370316 - 38369984
Alignment:
| Q |
11 |
tcatcaaaaccaagtccaacatattaccaaatgtcctttgattatgaaatctcgtattgccaaacatttcaagctcaacaaaattgatcataggatggtt |
110 |
Q |
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| T |
38370316 |
tcatctaaaccaagtccaacatattaccaaatgtcctttgattatgaaatctcgtattgccaagcatttcaagctcaacaaaattgatcataggatggtt |
38370217 |
T |
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| Q |
111 |
cgtgattcggttactcaaatgaatataaaaagttacattccatttcagtttg-------ggatgaatttagggcatttaccaaatttgcttcttttaatg |
203 |
Q |
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| T |
38370216 |
cgtgattcggttactcaaatgactataaaaagttacattccatttcagtttgctgagtgggatgaatttagggcatttaccaaatttgcttcttttaatg |
38370117 |
T |
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| Q |
204 |
aggctcaatctctttctagagataatgttgtcgctgatgtgatgaaagtttacttgcttgaaaaggataaattgaaaaaacagctggctgcagttaaggg |
303 |
Q |
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| T |
38370116 |
aggctcgatctctttctagagataatgttgtcgctgatgtgatgaaagtttacttgcttgaaaaggataaattgaaaaaacagctggctgcagttaaggg |
38370017 |
T |
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| Q |
304 |
tggagtgtgtttgagctttcattgttggacttc |
336 |
Q |
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| T |
38370016 |
tggagtgtgtttgagctttcattgttggacttc |
38369984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 41 - 336
Target Start/End: Complemental strand, 38380179 - 38379877
Alignment:
| Q |
41 |
atgtcctttgattatgaaatctcgtattgccaaacatttcaagctcaacaaaattgatcataggatggttcgtgattcggttactcaaatgaatataaaa |
140 |
Q |
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| T |
38380179 |
atgtcctttggttatgaaatctcgtattgccgagcatttcaagctcaaaaagattgatcataggatggttcgtgaatcaattactcaaatgactataaaa |
38380080 |
T |
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| Q |
141 |
agttacattccatttcagtttg-------ggatgaatttagggcatttaccaaatttgcttcttttaatgaggctcaatctctttctagagataatgttg |
233 |
Q |
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| T |
38380079 |
aatcatcttccatttcggtctgttgagtggggtgaatttagggaattcactaaatttgtttcgttcaatgaggctcaatttctttctagatatggtgttg |
38379980 |
T |
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| Q |
234 |
tcgctgatgtgatgaaagtttacttgcttgaaaaggataaattgaaaaaacagctggctgcagttaagggtggagtgtgtttgagctttcattgttggac |
333 |
Q |
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| T |
38379979 |
ctaatgatgtgatgaaagtttacttgcttgaaaaagagaaattgaaaaaacagcttgctgcaattgagggtggagtgtgtttgagctttcgttgttggac |
38379880 |
T |
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| Q |
334 |
ttc |
336 |
Q |
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||| |
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| T |
38379879 |
ttc |
38379877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 336
Target Start/End: Complemental strand, 38375022 - 38374713
Alignment:
| Q |
25 |
tccaacatattaccaaatgtcctttgattatgaaatctcgtattgccaaacatttcaagctcaacaaaattgatcataggatggttcgtgattcggttac |
124 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||| | | ||| ||||||| ||||| ||||||||||| ||| | || |
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| T |
38375022 |
tccaacatattcccaaatgtcctttgattatgaaatcttgtattgctgagtacttcgagctcaa---------tcataacatggttcgtgaatcgatgac |
38374932 |
T |
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| Q |
125 |
tcaaatgaatataaaaagttacattccatttcagtttg-------ggatgaatttagggcatttaccaaatttgcttcttttaatgaggctcaatctctt |
217 |
Q |
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|||||||| ||||||| | |||||||||| |||| |||| ||||||||||||| |||||||||| |||| |||||||||||||| ||| |
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| T |
38374931 |
tcaaatgactataaaacatcgtcttccatttcactttgttgagtgggataaatttagggcattcaccaaatttgtttctgataatgaggctcaatttcta |
38374832 |
T |
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| Q |
218 |
tctagagataatgttgtcgctgatgtgatgaaagtttacttgcttgaaaaggataaattgaaaaaacagctggctgcagttaagggtggagtgtgtttga |
317 |
Q |
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| T |
38374831 |
tccagatatggtcttgctgatgatgtgatgaaagtttacttgcttcaaaaagataaactgaaaaaacagctagctggaatagaaggtagaatgtgtttga |
38374732 |
T |
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| Q |
318 |
gctttcattgttggacttc |
336 |
Q |
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| |||| |||||||||||| |
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| T |
38374731 |
gttttcgttgttggacttc |
38374713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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