View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_low_56 (Length: 346)
Name: NF16378_low_56
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 42 - 344
Target Start/End: Original strand, 52376471 - 52376773
Alignment:
| Q |
42 |
cctttaggtgcacctgaaggtgcaaccatttgatcatcgtcatcatcatcgtctgttagatccccttgaggtgctccggctggcgacacaattggagcac |
141 |
Q |
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| T |
52376471 |
cctttaggtgcacctgaaggtgcaaccatttgatcatcgtcatcatcatcatctgttagatccccttgaggtgctccggttggagacacaattggagcac |
52376570 |
T |
|
| Q |
142 |
ttccaggtgctttagaactaccggctacattctcgccattgccttttggtgcctctgcaggcgcgttggtggatgctgctgtgggtgcatttgtgggtgc |
241 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52376571 |
tttcaggtgctttagaactaccggctacattcgcgccattgccttttggtgcctctgcaggcgcgttggtggatgctgctgtgggtgcatttgtgggtgc |
52376670 |
T |
|
| Q |
242 |
agattcaggtgttttgcttggttcgtttgatggtgcatttgttggtgcttgttgtggtgatttattggatgaaccatctgttgttggtgtctgtgctcct |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
52376671 |
agattcaggtgttttgcttggttcgtttgatggtgcatttgttggtgcttgttgtggtgatttattggatgaaccatctgctgttggtgtcggtgctcct |
52376770 |
T |
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| Q |
342 |
cct |
344 |
Q |
| |
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||| |
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| T |
52376771 |
cct |
52376773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 52376442 - 52376481
Alignment:
| Q |
1 |
ctatacttcaatcatcatctgtagaggtccctttaggtgc |
40 |
Q |
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| T |
52376442 |
ctatacttcaatcatcatctgtagaggtccctttaggtgc |
52376481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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