View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_low_58 (Length: 338)

Name: NF16378_low_58
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_low_58
NF16378_low_58
[»] chr6 (10 HSPs)
chr6 (17-327)||(33715309-33715621)
chr6 (25-88)||(21137482-21137545)
chr6 (17-88)||(21183396-21183467)
chr6 (48-89)||(21313170-21313211)
chr6 (127-226)||(21183471-21183566)
chr6 (128-234)||(21243081-21243183)
chr6 (19-63)||(33704760-33704804)
chr6 (128-234)||(21157302-21157404)
chr6 (172-229)||(21157823-21157880)
chr6 (165-234)||(21303989-21304058)
[»] scaffold0016 (4 HSPs)
scaffold0016 (17-88)||(46763-46834)
scaffold0016 (17-87)||(71608-71678)
scaffold0016 (51-88)||(61413-61450)
scaffold0016 (133-234)||(46599-46694)
[»] scaffold0272 (1 HSPs)
scaffold0272 (17-87)||(10310-10380)


Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 33715309 - 33715621
Alignment:
Q  17 agttgctggctgcggtggtgtcatacgcggtagtgaaggtaatttcaaggctgtcttttccttctacattagaacctatttgatatgggccactttaaag 116  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||    
T  33715309 agttgctggctgtggtggtgtcatacgcggtagtgaaggtaatttcaaggctgtcttttccttctacattaggacctgtttgatatgggccactttagag 33715408  T
Q  117 gtcatgagcacattctggttgaatcagactccttaattgctcgctctcaaactgattaaagatggttatccaaaggagcactagtcttttcaactcgtcc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33715409 gtcatgagcacattctggttgaatcagactccttaattgctcgctctcaaactgattaaagatggttatccaaaggagcactagtcctttcaactcgtcc 33715508  T
Q  217 aagatattcataggatctc--atataccaagctctacgatagttgcagtgataagggatctttatttggtgtgaaactatttagaggtagtagttagtta 314  Q
    | |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33715509 aggatattcataggatctcatatataccaagctctacgatagttgcagtgataagggatctttatttggtgtgaaactatttagaggtagtagttagtta 33715608  T
Q  315 cgtaactattcat 327  Q
    |||||||||||||    
T  33715609 cgtaactattcat 33715621  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 21137482 - 21137545
Alignment:
Q  25 gctgcggtggtgtcatacgcggtagtgaaggtaatttcaaggctgtcttttccttctacattag 88  Q
    |||| |||||||||||||||  | ||||||||||||||| ||||||||||||||||||||||||    
T  21137482 gctgtggtggtgtcatacgcaattgtgaaggtaatttcatggctgtcttttccttctacattag 21137545  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 21183396 - 21183467
Alignment:
Q  17 agttgctggctgcggtggtgtcatacgcggtagtgaaggtaatttcaaggctgtcttttccttctacattag 88  Q
    |||||||| |||||||||||||||| | | |||||||||||||||||| | |||||||||| ||||||||||    
T  21183396 agttgctgactgcggtggtgtcatatgtgatagtgaaggtaatttcaatgttgtcttttccgtctacattag 21183467  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 21313170 - 21313211
Alignment:
Q  48 agtgaaggtaatttcaaggctgtcttttccttctacattaga 89  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  21313170 agtgaaggtaatttcaaggctgtcttttccttctacattaga 21313211  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 21183471 - 21183566
Alignment:
Q  127 cattctggttgaatcagactccttaattgctcgctctcaaactgattaaagatggttatccaaaggagcactagtcttttcaactcgtccaagatattca 226  Q
    ||||| ||||||||||||||||| | |||||     |||||| ||||||||||||||   ||||||||||| ||||||||||||||||| | ||||||||    
T  21183471 cattcgggttgaatcagactcctcagttgcta----tcaaaccgattaaagatggttgcacaaaggagcaccagtcttttcaactcgtcgaggatattca 21183566  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 234
Target Start/End: Complemental strand, 21243183 - 21243081
Alignment:
Q  128 attctggttgaatcagactccttaattgctcgctctcaaactgattaaagatggttatccaaaggagcactagtcttttcaactcgtccaagatattcat 227  Q
    |||| |||||||||||||||| |||||| |     ||||| |||||||||||||   |||||||||||| ||||| ||||| ||||| || |||||||||    
T  21243183 attcgggttgaatcagactccctaattgata----tcaaattgattaaagatggccgtccaaaggagcattagtcctttcacctcgtacatgatattcat 21243088  T
Q  228 aggatct 234  Q
    |||||||    
T  21243087 aggatct 21243081  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 33704760 - 33704804
Alignment:
Q  19 ttgctggctgcggtggtgtcatacgcggtagtgaaggtaatttca 63  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||    
T  33704760 ttgctggctgcggaggtgtcatacgcgatagtgaaggtaatttca 33704804  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 21157302 - 21157404
Alignment:
Q  128 attctggttgaatcagactccttaattgctcgctctcaaactgattaaagatggttatccaaaggagcactagtcttttcaactcgtccaagatattcat 227  Q
    |||| |||||||||||||||| |||||| |     ||||| |||||||||||||   |||||||||||| ||||| ||||| ||| | || |||||||||    
T  21157302 attcgggttgaatcagactccctaattgata----tcaaattgattaaagatggccgtccaaaggagcattagtcctttcacctcatacatgatattcat 21157397  T
Q  228 aggatct 234  Q
    |||||||    
T  21157398 aggatct 21157404  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 21157823 - 21157880
Alignment:
Q  172 ttaaagatggttatccaaaggagcactagtcttttcaactcgtccaagatattcatag 229  Q
    ||||| |||| | |||||||||||   |||||||||||||||||||||||||||||||    
T  21157823 ttaaaaatggctgtccaaaggagcttcagtcttttcaactcgtccaagatattcatag 21157880  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 21303989 - 21304058
Alignment:
Q  165 aaactgattaaagatggttatccaaaggagcactagtcttttcaactcgtccaagatattcataggatct 234  Q
    ||||||||||||||||| | |||||||||| |  |||  ||||||||||||||||||||| | |||||||    
T  21303989 aaactgattaaagatggctgtccaaaggagtatcagttctttcaactcgtccaagatatttaaaggatct 21304058  T

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Target: scaffold0016 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 46834 - 46763
Alignment:
Q  17 agttgctggctgcggtggtgtcatacgcggtagtgaaggtaatttcaaggctgtcttttccttctacattag 88  Q
    ||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  46834 agttgctagctgcggtggtatcatacgcagtagtgaagttaatttcaaggctgtcttttccttctatattag 46763  T

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Target: scaffold0016; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 71678 - 71608
Alignment:
Q  17 agttgctggctgcggtggtgtcatacgcggtagtgaaggtaatttcaaggctgtcttttccttctacatta 87  Q
    ||||||||||||| ||| || ||||||||  |||||||||||||||||||||||||||||| |||||||||    
T  71678 agttgctggctgccgtgttggcatacgcgaaagtgaaggtaatttcaaggctgtcttttccctctacatta 71608  T

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Target: scaffold0016; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 61450 - 61413
Alignment:
Q  51 gaaggtaatttcaaggctgtcttttccttctacattag 88  Q
    ||||||||||||||||||||||||||||||||||||||    
T  61450 gaaggtaatttcaaggctgtcttttccttctacattag 61413  T

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Target: scaffold0016; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 234
Target Start/End: Complemental strand, 46694 - 46599
Alignment:
Q  133 ggttgaatcagactccttaattgctcgctctcaaactgattaaagatggttatccaaaggagcactagtcttttcaactcgtccaagatattcataggat 232  Q
    |||||||||||| ||| ||||||||     |||||||| ||||| |||||| ||||||||||||| |||| ||||||||||  || |||||| |||||||    
T  46694 ggttgaatcagaatccataattgcta----tcaaactggttaaatatggttgtccaaaggagcacaagtcctttcaactcg--caggatatttataggat 46601  T

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Target: scaffold0272 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 10380 - 10310
Alignment:
Q  17 agttgctggctgcggtggtgtcatacgcggtagtgaaggtaatttcaaggctgtcttttccttctacatta 87  Q
    ||||||||||||| ||| || ||||||||  |||||||||||||||||||||||||||||| |||||||||    
T  10380 agttgctggctgccgtgttggcatacgcgaaagtgaaggtaatttcaaggctgtcttttccctctacatta 10310  T

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