View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_low_62 (Length: 329)

Name: NF16378_low_62
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_low_62
NF16378_low_62
[»] chr5 (3 HSPs)
chr5 (109-212)||(27565079-27565182)
chr5 (126-171)||(33961796-33961841)
chr5 (99-199)||(36680001-36680101)
[»] chr3 (3 HSPs)
chr3 (274-313)||(24202347-24202386)
chr3 (224-268)||(24202271-24202316)
chr3 (126-162)||(2081004-2081040)
[»] chr1 (4 HSPs)
chr1 (103-219)||(29415456-29415574)
chr1 (119-165)||(5157178-5157224)
chr1 (277-319)||(29413641-29413683)
chr1 (137-173)||(44120299-44120335)
[»] chr7 (2 HSPs)
chr7 (134-170)||(44995073-44995109)
chr7 (135-167)||(35267471-35267503)
[»] chr6 (1 HSPs)
chr6 (119-162)||(13908346-13908389)
[»] chr4 (2 HSPs)
chr4 (134-167)||(23990594-23990627)
chr4 (135-167)||(23983899-23983931)
[»] chr2 (2 HSPs)
chr2 (125-162)||(18525162-18525199)
chr2 (134-162)||(17976289-17976317)
[»] chr8 (1 HSPs)
chr8 (125-157)||(10559981-10560013)


Alignment Details
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 27565182 - 27565079
Alignment:
Q  109 atggtttttgcaagtatttatgtcta-tagataagttcaaataagtcaattcaaataggctctagggttgtgaagagtagaaatgatgcatttaatatca 207  Q
    ||||||||||||||| ||||| |||| || |||||||||||||||||||| ||||| | | || ||||||||||||||||||| |||||||||||| |||    
T  27565182 atggtttttgcaagtgtttat-tctagtacataagttcaaataagtcaatccaaatggaccctggggttgtgaagagtagaaaggatgcatttaatgtca 27565084  T
Q  208 tgtga 212  Q
    |||||    
T  27565083 tgtga 27565079  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 33961796 - 33961841
Alignment:
Q  126 ttatgtctatagataagttcaaataagtcaattcaaataggctcta 171  Q
    |||||||  |||||||| |||||||| |||||||||||||||||||    
T  33961796 ttatgtccgtagataagctcaaataattcaattcaaataggctcta 33961841  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 36680101 - 36680001
Alignment:
Q  99 gttctctcatatggtttttgcaagtatttatgtctata-gataagttcaaataagtcaattcaaataggctctagggttgtgaagagtagaaatgatgca 197  Q
    ||||| ||| |||||||||| |||| |||||| ||| | |||||||| ||||||||| || |||| || || ||||| ||||||||||||||| ||| ||    
T  36680101 gttctttcaaatggtttttgtaagtgtttatg-ctagaagataagtttaaataagtcgatccaaacagactttagggatgtgaagagtagaaaggataca 36680003  T
Q  198 tt 199  Q
    ||    
T  36680002 tt 36680001  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 313
Target Start/End: Original strand, 24202347 - 24202386
Alignment:
Q  274 ggagatctatgaggattgatttccatatttccttatattt 313  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24202347 ggagatctatgaggattgatttccatatttccttatattt 24202386  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 24202271 - 24202316
Alignment:
Q  224 attttcatgaatggtt-ggttttagaataatatggaaatatctcat 268  Q
    |||||||||||||||| ||| |||||||| ||||||||||||||||    
T  24202271 attttcatgaatggtttggtgttagaatattatggaaatatctcat 24202316  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 2081040 - 2081004
Alignment:
Q  126 ttatgtctatagataagttcaaataagtcaattcaaa 162  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  2081040 ttatgtcaatagataagttcaaataagtcaatccaaa 2081004  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 219
Target Start/End: Complemental strand, 29415574 - 29415456
Alignment:
Q  103 tctcatatggtttttgcaagtatttatgtctatagataagttcaaataagtcaattcaaataggctctagggttgtgaagagtag--aaatgatgcattt 200  Q
    ||||| ||||||||||||||  ||| ||   ||||||||||||||||||||| ||  ||| || |||||||| || |||||||||  ||| |||||||||    
T  29415574 tctcaaatggtttttgcaagagtttgtgctaatagataagttcaaataagtcgatctaaacagactctagggctgcgaagagtagaaaaaggatgcattt 29415475  T
Q  201 aatatcatgtgattctata 219  Q
    | | |||| ||||||||||    
T  29415474 agtgtcatctgattctata 29415456  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 5157178 - 5157224
Alignment:
Q  119 caagtatttatgtctatagataagttcaaataagtcaattcaaatag 165  Q
    ||||| ||||||||  ||||||||||||||||||||||| |||||||    
T  5157178 caagtgtttatgtccgtagataagttcaaataagtcaatccaaatag 5157224  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 319
Target Start/End: Complemental strand, 29413683 - 29413641
Alignment:
Q  277 gatctatgaggattgatttccatatttccttatatttgatgat 319  Q
    ||||| |||||||||||||||||| |||||||||||| |||||    
T  29413683 gatctctgaggattgatttccataattccttatatttcatgat 29413641  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 44120335 - 44120299
Alignment:
Q  137 gataagttcaaataagtcaattcaaataggctctagg 173  Q
    |||||||||||||||||| |||||||||||| |||||    
T  44120335 gataagttcaaataagtcgattcaaataggcactagg 44120299  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 44995109 - 44995073
Alignment:
Q  134 atagataagttcaaataagtcaattcaaataggctct 170  Q
    ||||||||||||||||||||||||||||||| |||||    
T  44995109 atagataagttcaaataagtcaattcaaatacgctct 44995073  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 35267471 - 35267503
Alignment:
Q  135 tagataagttcaaataagtcaattcaaataggc 167  Q
    |||||||| ||||||||||||||||||||||||    
T  35267471 tagataagctcaaataagtcaattcaaataggc 35267503  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 13908346 - 13908389
Alignment:
Q  119 caagtatttatgtctatagataagttcaaataagtcaattcaaa 162  Q
    ||||| ||||||||  ||||||||||||||||||||||||||||    
T  13908346 caagtgtttatgtcagtagataagttcaaataagtcaattcaaa 13908389  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 23990627 - 23990594
Alignment:
Q  134 atagataagttcaaataagtcaattcaaataggc 167  Q
    ||||||||| ||||||||||||||||||||||||    
T  23990627 atagataagctcaaataagtcaattcaaataggc 23990594  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 23983931 - 23983899
Alignment:
Q  135 tagataagttcaaataagtcaattcaaataggc 167  Q
    |||||||| ||||||||||||||||||||||||    
T  23983931 tagataagctcaaataagtcaattcaaataggc 23983899  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 18525199 - 18525162
Alignment:
Q  125 tttatgtctatagataagttcaaataagtcaattcaaa 162  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  18525199 tttatgtctgtagataagctcaaataagtcaattcaaa 18525162  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 162
Target Start/End: Complemental strand, 17976317 - 17976289
Alignment:
Q  134 atagataagttcaaataagtcaattcaaa 162  Q
    |||||||||||||||||||||||||||||    
T  17976317 atagataagttcaaataagtcaattcaaa 17976289  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 10560013 - 10559981
Alignment:
Q  125 tttatgtctatagataagttcaaataagtcaat 157  Q
    |||||||| ||||||||||||||||||||||||    
T  10560013 tttatgtcaatagataagttcaaataagtcaat 10559981  T

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