View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_low_63 (Length: 326)

Name: NF16378_low_63
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_low_63
NF16378_low_63
[»] chr1 (3 HSPs)
chr1 (13-308)||(166955-167250)
chr1 (13-308)||(141219-141514)
chr1 (13-308)||(18212802-18213097)
[»] chr2 (4 HSPs)
chr2 (17-308)||(18597684-18597975)
chr2 (85-290)||(19385826-19386031)
chr2 (17-308)||(18603441-18603732)
chr2 (104-286)||(29558731-29558913)
[»] chr3 (3 HSPs)
chr3 (104-286)||(2292726-2292908)
chr3 (104-248)||(17781415-17781559)
chr3 (104-248)||(19090042-19090186)
[»] chr8 (5 HSPs)
chr8 (81-286)||(266903-267108)
chr8 (81-286)||(648813-649018)
chr8 (81-286)||(834548-834753)
chr8 (84-292)||(9504232-9504440)
chr8 (84-308)||(289591-289815)
[»] chr7 (1 HSPs)
chr7 (93-285)||(12862232-12862424)
[»] chr6 (2 HSPs)
chr6 (103-286)||(19821697-19821880)
chr6 (103-170)||(19886799-19886866)
[»] chr4 (1 HSPs)
chr4 (160-284)||(7233375-7233497)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 167250 - 166955
Alignment:
Q  13 atactgttgttttatcaatcttcgtgtctttagttttcacatcagtgattaccttggcgtgtaatgctattgaaagtggcgatgaaagtagtaaacttta 112  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  167250 atactgttgttttatcaatctttgtgtctttagttttcacatcactgattaccttggcgtgtgatgctattgaaagtggcgatgaaagtagtaaacttta 167151  T
Q  113 catcgtgtacatgggctcacttccaaagggagcatcatattctccaacctctcaccatgtcagcttgttgcaacatgttatggacgagagtgacatagaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  167150 catcgtgtacatgggctcacttccaaagggagcatcatattctccaacctctcaccatgtcagcttgttgcaacatgttatggatgagagtgacatagaa 167051  T
Q  213 aatcgcttagttcgaagttacaagaggagtttcaatggttttgctgtcatactcaatgatcaagaaagggaaaaacttatccgaatgagaggtgtg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  167050 aatcgcttagttcgaagttacaagaggagtttcaatggttttgctgtcatactcaatgatcaagaaagggaaaaacttatccgaatgagaggtgtg 166955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 141514 - 141219
Alignment:
Q  13 atactgttgttttatcaatcttcgtgtctttagttttcacatcagtgattaccttggcgtgtaatgctattgaaagtggcgatgaaagtagtaaacttta 112  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| | |||||||| | |||| |||||||||||||||||||||||||||||||||||||    
T  141514 atactgttgttttatcaatctttgtgcctttagttttcacatcattaattaccttagtgtgtgatgctattgaaagtggcgatgaaagtagtaaacttta 141415  T
Q  113 catcgtgtacatgggctcacttccaaagggagcatcatattctccaacctctcaccatgtcagcttgttgcaacatgttatggacgagagtgacatagaa 212  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |  ||||||||||||    
T  141414 catcgtgtacatgggctcacttcctaagggagcatcatattccccaacctctcaccatatcagcttgttgcaacatgttatggatggtagtgacatagaa 141315  T
Q  213 aatcgcttagttcgaagttacaagaggagtttcaatggttttgctgtcatactcaatgatcaagaaagggaaaaacttatccgaatgagaggtgtg 308  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  141314 aatcgcttagttcgaagttacaaaaggagtttcaatggttttgctgccatactcaatgatcaagaaagggaaaaacttgtccgaatgagaggtgtg 141219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 13 - 308
Target Start/End: Original strand, 18212802 - 18213097
Alignment:
Q  13 atactgttgttttatcaatcttcgtgtctttagttttcacatcagtgattaccttggcgtgtaatgctattgaaagtggcgatgaaagtagtaaacttta 112  Q
    ||||| |||||||||||||||| || |||||||||||  ||||| | ||| | ||||  ||  |||||| ||||||||| ||  ||||||||||||||||    
T  18212802 atactattgttttatcaatctttgtatctttagtttttgcatcacttattccattggtatgcgatgctactgaaagtggtgaaaaaagtagtaaacttta 18212901  T
Q  113 catcgtgtacatgggctcacttccaaagggagcatcatattctccaacctctcaccatgtcagcttgttgcaacatgttatggacgagagtgacatagaa 212  Q
    ||| ||||||||||||||||||||||| |||| ||||||||| ||||||||||||||| ||| ||||||||||||||| || || |  ||||   |||||    
T  18212902 cattgtgtacatgggctcacttccaaaaggagaatcatattccccaacctctcaccatatcaacttgttgcaacatgtcattgatggtagtggtgtagaa 18213001  T
Q  213 aatcgcttagttcgaagttacaagaggagtttcaatggttttgctgtcatactcaatgatcaagaaagggaaaaacttatccgaatgagaggtgtg 308  Q
    || | ||||||  |||||||||| |||||||||||||||||||||| |||||||||||||||| | |||||||||||| | |||||||||||||||    
T  18213002 aaccacttagtgagaagttacaataggagtttcaatggttttgctgccatactcaatgatcaacagagggaaaaacttgttcgaatgagaggtgtg 18213097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 18597684 - 18597975
Alignment:
Q  17 tgttgttttatcaatcttcgtgtctttagttttcacatcagtgattaccttggcgtgtaatgctattgaaagtggcgatgaaagtagtaaactttacatc 116  Q
    ||||||||||||| || | || ||||||||||  |||||| | ||| |||||| |||| |||| | | ||||||| |||||||| ||||||||| ||||     
T  18597684 tgttgttttatcattccttgtttctttagtttagacatcactaattcccttggtgtgtgatgccactaaaagtggtgatgaaagcagtaaacttcacatt 18597783  T
Q  117 gtgtacatgggctcacttccaaagggagcatcatattctccaacctctcaccatgtcagcttgttgcaacatgttatggacgagagtgacatagaaaatc 216  Q
    ||||||||||  ||||||||||||| ||| |||||||| ||||  ||||| ||| ||||||||||||||||||| ||||| |  ||||||||||||||||    
T  18597784 gtgtacatggattcacttccaaaggaagcctcatattccccaagatctcatcatctcagcttgttgcaacatgtcatggatggtagtgacatagaaaatc 18597883  T
Q  217 gcttagttcgaagttacaagaggagtttcaatggttttgctgtcatactcaatgatcaagaaagggaaaaacttatccgaatgagaggtgtg 308  Q
     |||  ||  |||||||||||| ||||||||||||||||||| | ||||||| |||||| |||||||||||||| | || ||||||||||||    
T  18597884 tcttgctttaaagttacaagagaagtttcaatggttttgctgccgtactcaacgatcaacaaagggaaaaacttgttcgcatgagaggtgtg 18597975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 85 - 290
Target Start/End: Original strand, 19385826 - 19386031
Alignment:
Q  85 aaagtggcgatgaaagtagtaaactttacatcgtgtacatgggctcacttccaaagggagcatcatattctccaacctctcaccatgtcagcttgttgca 184  Q
    ||||||| |||||||| | ||||||| |||| ||||||||||| ||||||||||||| ||| || ||||| |||| |||||| ||| |||||||||||||    
T  19385826 aaagtggtgatgaaagcaataaacttcacattgtgtacatgggttcacttccaaaggaagcctcgtattccccaagctctcatcatctcagcttgttgca 19385925  T
Q  185 acatgttatggacgagagtgacatagaaaatcgcttagttcgaagttacaagaggagtttcaatggttttgctgtcatactcaatgatcaagaaagggaa 284  Q
    ||||||| |||| |  ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||  ||||||| |||||| ||||||||    
T  19385926 acatgttgtggatggtagtgacatagaaaatcgcttagttcaaagttacaagagaagtttcaatggttttgctgttgtactcaacgatcaacaaagggaa 19386025  T
Q  285 aaactt 290  Q
    ||||||    
T  19386026 aaactt 19386031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 18603441 - 18603732
Alignment:
Q  17 tgttgttttatcaatcttcgtgtctttagttttcacatcagtgattaccttggcgtgtaatgctattgaaagtggcgatgaaagtagtaaactttacatc 116  Q
    ||||||||||||| || | || ||||||  ||| |||||| | |||  ||||| |||| |||| | | ||| ||| |||||||| ||||||||| ||||     
T  18603441 tgttgttttatcattccttgtttctttatatttgacatcactaattcgcttggtgtgtgatgccactaaaactggagatgaaagcagtaaacttcacatt 18603540  T
Q  117 gtgtacatgggctcacttccaaagggagcatcatattctccaacctctcaccatgtcagcttgttgcaacatgttatggacgagagtgacatagaaaatc 216  Q
    ||||||||||| ||||||||||||| ||| |||||||| ||||  ||||| ||| ||||||||||||||||||| ||||| |  ||||||||||||||||    
T  18603541 gtgtacatgggttcacttccaaaggaagcctcatattccccaagatctcatcatctcagcttgttgcaacatgtcatggatggtagtgacatagaaaatc 18603640  T
Q  217 gcttagttcgaagttacaagaggagtttcaatggttttgctgtcatactcaatgatcaagaaagggaaaaacttatccgaatgagaggtgtg 308  Q
     ||| ||||||||||||||||| ||||||||||||||||||| | ||||||| ||| || |||||||| ||||| | || ||||||||||||    
T  18603641 tcttggttcgaagttacaagagaagtttcaatggttttgctgccgtactcaacgattaataaagggaataacttgttcgcatgagaggtgtg 18603732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 104 - 286
Target Start/End: Original strand, 29558731 - 29558913
Alignment:
Q  104 taaactttacatcgtgtacatgggctcacttccaaagggagcatcatattctccaacctctcaccatgtcagcttgttgcaacatgttatggacgagagt 203  Q
    |||||||||||| || ||||||||||||||||| ||||||| | | ||||  ||||||||| | |||  || |||||| ||||| ||||| || |  |||    
T  29558731 taaactttacattgtatacatgggctcacttcctaagggagtaccgtatttcccaacctctgatcatcgcaacttgttacaacaagttattgatggtagt 29558830  T
Q  204 gacatagaaaatcgcttagttcgaagttacaagaggagtttcaatggttttgctgtcatactcaatgatcaagaaagggaaaa 286  Q
    || |||||||||| ||||||||| ||||||||||||||||||||||| ||||| | |||||||||||||||| ||||| ||||    
T  29558831 gagatagaaaatctcttagttcgtagttacaagaggagtttcaatggctttgccgccatactcaatgatcaacaaaggaaaaa 29558913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 104 - 286
Target Start/End: Original strand, 2292726 - 2292908
Alignment:
Q  104 taaactttacatcgtgtacatgggctcacttccaaagggagcatcatattctccaacctctcaccatgtcagcttgttgcaacatgttatggacgagagt 203  Q
    |||||||||||| || ||||||||||||||||| || | || ||||||||| ||||||||||||||| |||||||| | ||||| ||||| || || ||     
T  2292726 taaactttacattgtatacatgggctcacttcctaacgaagaatcatattccccaacctctcaccatctcagcttgctacaacaagttattgatgatagc 2292825  T
Q  204 gacatagaaaatcgcttagttcgaagttacaagaggagtttcaatggttttgctgtcatactcaatgatcaagaaagggaaaa 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||  | ||| ||||||||||    
T  2292826 gacatagaaaatcgcttagttcgaagttacaagaggagtttcaatggttttgccgccatactaaacaaccaacaaagggaaaa 2292908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 248
Target Start/End: Complemental strand, 17781559 - 17781415
Alignment:
Q  104 taaactttacatcgtgtacatgggctcacttccaaagggagcatcatattctccaacctctcaccatgtcagcttgttgcaacatgttatggacgagagt 203  Q
    |||||||||||| || ||||||||||||||| | ||||||| | ||||||  |||||||||   |||  || |||||| ||||| ||  | |  |  ||     
T  17781559 taaactttacattgtatacatgggctcactttctaagggagtaccatatttcccaacctctgttcatcgcaacttgttacaacaagtccttgctggtagc 17781460  T
Q  204 gacatagaaaatcgcttagttcgaagttacaagaggagtttcaat 248  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||    
T  17781459 gacatagaaaatcgcttggttcgtagttacaagaggagtttcaat 17781415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 248
Target Start/End: Complemental strand, 19090186 - 19090042
Alignment:
Q  104 taaactttacatcgtgtacatgggctcacttccaaagggagcatcatattctccaacctctcaccatgtcagcttgttgcaacatgttatggacgagagt 203  Q
    |||||||||||| || ||||||||||||||| | ||||||| | ||||||  |||||||||   |||  || |||||| ||||| ||  | |  |  ||     
T  19090186 taaactttacattgtatacatgggctcactttctaagggagtaccatatttcccaacctctgttcatcgcaacttgttacaacaagtccttgctggtagc 19090087  T
Q  204 gacatagaaaatcgcttagttcgaagttacaagaggagtttcaat 248  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||    
T  19090086 gacatagaaaatcgcttggttcgtagttacaagaggagtttcaat 19090042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 81 - 286
Target Start/End: Original strand, 266903 - 267108
Alignment:
Q  81 attgaaagtggcgatgaaagtagtaaactttacatcgtgtacatgggctcacttccaaagggagcatcatattctccaacctctcaccatgtcagcttgt 180  Q
    ||||||||||| |||||||| | ||||||| |||| ||||| ||||| |||||||  ||||||||||||||||||||||||||||||||| | | ||||     
T  266903 attgaaagtggtgatgaaagcaataaacttcacattgtgtatatgggttcacttcgtaagggagcatcatattctccaacctctcaccatctaaacttgc 267002  T
Q  181 tgcaacatgttatggacgagagtgacatagaaaatcgcttagttcgaagttacaagaggagtttcaatggttttgctgtcatactcaatgatcaagaaag 280  Q
    ||||||| ||||| || |  ||||| ||||||||||  |||||||||||||||||||| ||||||||||||||||| |   |||||||||||||| ||||    
T  267003 tgcaacaagttattgatggtagtgatatagaaaatcatttagttcgaagttacaagagaagtttcaatggttttgccgcagtactcaatgatcaacaaag 267102  T
Q  281 ggaaaa 286  Q
     |||||    
T  267103 agaaaa 267108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 81 - 286
Target Start/End: Complemental strand, 649018 - 648813
Alignment:
Q  81 attgaaagtggcgatgaaagtagtaaactttacatcgtgtacatgggctcacttccaaagggagcatcatattctccaacctctcaccatgtcagcttgt 180  Q
    ||||||||||| |||||||| | ||||||| |||| ||||| ||||| |||||||  ||||||||||||||||||||||||||||||||| | | ||||     
T  649018 attgaaagtggtgatgaaagcaataaacttcacattgtgtatatgggttcacttcgtaagggagcatcatattctccaacctctcaccatctaaacttgc 648919  T
Q  181 tgcaacatgttatggacgagagtgacatagaaaatcgcttagttcgaagttacaagaggagtttcaatggttttgctgtcatactcaatgatcaagaaag 280  Q
    ||||||| ||||| || |  ||||| ||||||||||  |||||||||||||||||||| ||||||||||||||||| |   |||||||||||||| ||||    
T  648918 tgcaacaagttattgatggtagtgatatagaaaatcatttagttcgaagttacaagagaagtttcaatggttttgccgcagtactcaatgatcaacaaag 648819  T
Q  281 ggaaaa 286  Q
     |||||    
T  648818 agaaaa 648813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 81 - 286
Target Start/End: Complemental strand, 834753 - 834548
Alignment:
Q  81 attgaaagtggcgatgaaagtagtaaactttacatcgtgtacatgggctcacttccaaagggagcatcatattctccaacctctcaccatgtcagcttgt 180  Q
    ||||||||||| |||||||| | ||||||| |||| ||||| ||||| |||||||  ||||||||||||||||||||||||||||||||| | | ||||     
T  834753 attgaaagtggtgatgaaagcaataaacttcacattgtgtatatgggttcacttcgtaagggagcatcatattctccaacctctcaccatctaaacttgc 834654  T
Q  181 tgcaacatgttatggacgagagtgacatagaaaatcgcttagttcgaagttacaagaggagtttcaatggttttgctgtcatactcaatgatcaagaaag 280  Q
    ||||||| ||||| || |  ||||| ||||||||||  |||||||||||||||||||| ||||||||||||||||| |   |||||||||||||| ||||    
T  834653 tgcaacaagttattgatggtagtgatatagaaaatcatttagttcgaagttacaagagaagtttcaatggttttgccgcagtactcaatgatcaacaaag 834554  T
Q  281 ggaaaa 286  Q
     |||||    
T  834553 agaaaa 834548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 84 - 292
Target Start/End: Original strand, 9504232 - 9504440
Alignment:
Q  84 gaaagtggcgatgaaagtagtaaactttacatcgtgtacatgggctcacttccaaagggagcatcatattctccaacctctcaccatgtcagcttgttgc 183  Q
    |||||||  |||||||| ||||||  |||||| ||||||||||||||| |||| || ||| ||||||||| |||||||||||| ||| ||||| ||||||    
T  9504232 gaaagtgatgatgaaagcagtaaaacttacatagtgtacatgggctcaattcctaaaggaacatcatattatccaacctctcatcatctcagcatgttgc 9504331  T
Q  184 aacatgttatggacgagagtgacatagaaaatcgcttagttcgaagttacaagaggagtttcaatggttttgctgtcatactcaatgatcaagaaaggga 283  Q
    |||| || || || |  ||| |  | ||||||| | |||||||||||||||| ||||| |||| ||||||||||| |||||| ||||| ||| |||||||    
T  9504332 aacaagtcattgatggtagtaatgtggaaaatcacctagttcgaagttacaacaggagcttcagtggttttgctgccatacttaatgaccaacaaaggga 9504431  T
Q  284 aaaacttat 292  Q
    ||| |||||    
T  9504432 aaagcttat 9504440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 84 - 308
Target Start/End: Original strand, 289591 - 289815
Alignment:
Q  84 gaaagtggcgatgaaagtagtaaactttacatcgtgtacatgggctcacttccaaagggagcatcatattctccaacctctcaccatgtcagcttgttgc 183  Q
    |||||||  |||||||| ||||||  |||||| || ||||||||||||||| | || ||| ||||||||| |||||||||||| |||   ||| ||||||    
T  289591 gaaagtgatgatgaaagcagtaaaacttacatagtatacatgggctcactttctaaaggaacatcatattatccaacctctcatcatcaaagcatgttgc 289690  T
Q  184 aacatgttatggacgagagtgacatagaaaatcgcttagttcgaagttacaagaggagtttcaatggttttgctgtcatactcaatgatcaagaaaggga 283  Q
    ||||  | || || |  ||  |   ||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| ||||| ||| |||||||    
T  289691 aacaaatcattgatggtagcaatgcagaaaatcgcttagttcgaagttacaacaggagcttcaatggttttgctgccatacttaatgaccaacaaaggga 289790  T
Q  284 aaaacttatccgaatgagaggtgtg 308  Q
    ||| |||||  | ||||||||||||    
T  289791 aaagcttattggcatgagaggtgtg 289815  T

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Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 93 - 285
Target Start/End: Complemental strand, 12862424 - 12862232
Alignment:
Q  93 gatgaaagtagtaaactttacatcgtgtacatgggctcacttccaaagggagcatcatattctccaacctctcaccatgtcagcttgttgcaacatgtta 192  Q
    |||||| || ||||||||||||| || || |||||||||||||| ||  || ||||||||| |||||||||||| ||| ||| | | || ||||| ||||    
T  12862424 gatgaaggtggtaaactttacattgtatatatgggctcacttcctaaaagaacatcatattttccaacctctcatcatctcaacatattacaacaagtta 12862325  T
Q  193 tggacgagagtgacatagaaaatcgcttagttcgaagttacaagaggagtttcaatggttttgctgtcatactcaatgatcaagaaagggaaa 285  Q
    | || |  ||| |||||||||||| ||||||||||||||| ||||  ||||||||||||||||| | | |||||||| ||||| |||||||||    
T  12862324 ttgatggtagtaacatagaaaatcacttagttcgaagttataagaaaagtttcaatggttttgccgccgtactcaataatcaacaaagggaaa 12862232  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 286
Target Start/End: Original strand, 19821697 - 19821880
Alignment:
Q  103 gtaaactttacatcgtgtacatgggctcacttccaaagggagcatcatattctccaacctctcaccatgtcagcttgttgcaacatgttatggacgagag 202  Q
    |||||||| |||| || ||||||||||||||||| |||| || | ||||||| ||||| ||||||||| |||  || ||| | || ||||| || |  ||    
T  19821697 gtaaacttcacattgtatacatgggctcacttcctaaggaagtaccatattccccaacatctcaccatctcaatttattgaagcaagttattgatggaag 19821796  T
Q  203 tgacatagaaaatcgcttagttcgaagttacaagaggagtttcaatggttttgctgtcatactcaatgatcaagaaagggaaaa 286  Q
     |||||||| |  |||||||| |||||||||||  | ||||||||||| ||||| | ||||||||| || ||| ||||||||||    
T  19821797 cgacatagacacccgcttagtacgaagttacaatcgaagtttcaatggctttgccgccatactcaacgaccaacaaagggaaaa 19821880  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 19886799 - 19886866
Alignment:
Q  103 gtaaactttacatcgtgtacatgggctcacttccaaagggagcatcatattctccaacctctcaccat 170  Q
    |||||||| |||| || ||||||||||||||||| |||| || | ||||||| ||||| |||||||||    
T  19886799 gtaaacttcacattgtatacatgggctcacttcctaaggaagtaccatattccccaacatctcaccat 19886866  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 284
Target Start/End: Original strand, 7233375 - 7233497
Alignment:
Q  160 cctctcaccatgtcagcttgttgcaacatgttatggacgagagtgacatagaaaatcgcttagttcgaagttacaagaggagtttcaatggttttgctgt 259  Q
    ||||||||||| ||| |||||||||||| ||||| || |  || |||||| ||| | || ||||| ||||||||||||||||||||| |||||| || ||    
T  7233375 cctctcaccatctcaacttgttgcaacaagttattgatggtagcgacatataaatt-gcatagtttgaagttacaagaggagtttcattggtttggc-gt 7233472  T
Q  260 catactcaatgatcaagaaagggaa 284  Q
    ||||||||| |||||| ||||||||    
T  7233473 catactcaacgatcaacaaagggaa 7233497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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