View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_low_64 (Length: 325)

Name: NF16378_low_64
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_low_64
NF16378_low_64
[»] chr4 (1 HSPs)
chr4 (28-316)||(24480922-24481210)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 28 - 316
Target Start/End: Complemental strand, 24481210 - 24480922
Alignment:
Q  28 atataagccctaccaatatagttcaccgccaccccctgtgtattaagctcgatgacatatgcattttgactccttccaatagttatactatgatcattgt 127  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24481210 atataagccctaccaatatagttcacctccaccccctgtgtattaagcttgatgacatatgcattttgactccttccaatagttatactatgatcattgt 24481111  T
Q  128 tgtgttgtttgtattgcaataaagttttcattagtaataaaagtctgctctgtaataaagctatgctttggactccatgttgtatcattttgtataagtg 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24481110 tgtgttgtttgtattgcaataaagttttcattagtaataaaagtctgctctgtaataaagctatgctttggactccatgttgtatcattttgtataagtg 24481011  T
Q  228 ttatttcagaagcgtattttaatctgttttatcaaatttcatatactgatatatagtttcgtatttgttgttgctaatcttgatgatgt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24481010 ttatttcagaagcgtattttaatctgttttatcaaatttcatatactgatatatagtttcgtatttgttgttgctaatcttgatgatgt 24480922  T

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