View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_low_7 (Length: 598)

Name: NF16378_low_7
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_low_7
NF16378_low_7
[»] chr1 (36 HSPs)
chr1 (1-589)||(10233350-10233936)
chr1 (230-302)||(2295163-2295235)
chr1 (230-301)||(38001663-38001734)
chr1 (230-302)||(1432582-1432654)
chr1 (230-302)||(50644186-50644258)
chr1 (257-302)||(3887590-3887635)
chr1 (257-302)||(7941673-7941718)
chr1 (230-287)||(33204325-33204382)
chr1 (230-302)||(5720992-5721064)
chr1 (34-78)||(32047023-32047067)
chr1 (232-299)||(7069486-7069553)
chr1 (247-298)||(9572049-9572100)
chr1 (252-302)||(49938814-49938864)
chr1 (241-302)||(489257-489318)
chr1 (230-299)||(29904821-29904890)
chr1 (230-302)||(6557039-6557111)
chr1 (238-302)||(14332048-14332112)
chr1 (350-406)||(28689524-28689580)
chr1 (231-299)||(38247397-38247465)
chr1 (259-302)||(12763389-12763432)
chr1 (247-302)||(27976671-27976725)
chr1 (252-302)||(37517119-37517169)
chr1 (350-408)||(45999358-45999416)
chr1 (230-275)||(15784411-15784456)
chr1 (83-132)||(40663760-40663809)
chr1 (410-451)||(41505560-41505601)
chr1 (269-302)||(41505751-41505784)
chr1 (373-425)||(172670-172722)
chr1 (230-298)||(3233946-3234014)
chr1 (230-302)||(5741673-5741745)
chr1 (373-413)||(7028229-7028269)
chr1 (252-300)||(7119891-7119939)
chr1 (230-302)||(36514607-36514679)
chr1 (324-356)||(38503462-38503494)
chr1 (230-290)||(39976141-39976201)
chr1 (230-302)||(51190905-51190977)
[»] chr5 (32 HSPs)
chr5 (230-302)||(16937814-16937886)
chr5 (230-302)||(10640020-10640092)
chr5 (230-291)||(6521156-6521217)
chr5 (257-302)||(16457937-16457982)
chr5 (230-302)||(11700229-11700301)
chr5 (230-290)||(15015922-15015982)
chr5 (231-302)||(15246900-15246971)
chr5 (265-302)||(2568724-2568761)
chr5 (257-302)||(29925908-29925953)
chr5 (237-302)||(32942661-32942726)
chr5 (252-301)||(39248166-39248215)
chr5 (230-295)||(39594881-39594946)
chr5 (230-302)||(7674714-7674786)
chr5 (230-302)||(9107157-9107229)
chr5 (353-413)||(12595524-12595584)
chr5 (230-293)||(32941545-32941609)
chr5 (230-298)||(35445775-35445843)
chr5 (230-302)||(41419386-41419458)
chr5 (230-285)||(12425657-12425712)
chr5 (230-301)||(41534506-41534577)
chr5 (268-302)||(499701-499735)
chr5 (264-302)||(42646957-42646995)
chr5 (257-298)||(17560173-17560214)
chr5 (257-302)||(32009760-32009805)
chr5 (230-299)||(40426835-40426904)
chr5 (257-294)||(41981661-41981698)
chr5 (265-301)||(3520645-3520681)
chr5 (230-302)||(7705929-7706001)
chr5 (230-302)||(9202679-9202751)
chr5 (267-299)||(24030144-24030176)
chr5 (240-292)||(32372689-32372741)
chr5 (379-419)||(37112357-37112397)
[»] chr3 (32 HSPs)
chr3 (231-293)||(18405763-18405825)
chr3 (230-302)||(31365119-31365191)
chr3 (230-302)||(34610737-34610809)
chr3 (238-297)||(37795667-37795726)
chr3 (232-302)||(402475-402545)
chr3 (260-302)||(24624276-24624318)
chr3 (260-302)||(45541637-45541679)
chr3 (251-296)||(43046738-43046783)
chr3 (252-302)||(21367734-21367784)
chr3 (232-302)||(22203497-22203566)
chr3 (230-299)||(9832686-9832755)
chr3 (230-299)||(24085269-24085338)
chr3 (237-302)||(30443960-30444025)
chr3 (237-302)||(38902133-38902197)
chr3 (265-302)||(54837001-54837038)
chr3 (230-302)||(13715503-13715575)
chr3 (237-301)||(39980797-39980861)
chr3 (379-451)||(42747876-42747948)
chr3 (241-292)||(42799909-42799960)
chr3 (230-271)||(5448542-5448583)
chr3 (241-302)||(37389250-37389311)
chr3 (267-300)||(47904049-47904082)
chr3 (236-296)||(466266-466326)
chr3 (258-302)||(20257603-20257647)
chr3 (230-302)||(20880543-20880615)
chr3 (230-302)||(24684753-24684825)
chr3 (230-302)||(26878267-26878339)
chr3 (258-302)||(31365268-31365312)
chr3 (230-302)||(34235024-34235096)
chr3 (258-298)||(34637944-34637984)
chr3 (230-302)||(37689296-37689368)
chr3 (230-302)||(39602142-39602214)
[»] chr8 (22 HSPs)
chr8 (237-302)||(26771332-26771397)
chr8 (230-302)||(1058008-1058080)
chr8 (230-298)||(30251385-30251453)
chr8 (230-302)||(35534544-35534616)
chr8 (241-302)||(38648418-38648479)
chr8 (251-298)||(28763439-28763486)
chr8 (230-293)||(43717865-43717928)
chr8 (237-302)||(32840924-32840989)
chr8 (230-302)||(10758188-10758260)
chr8 (383-439)||(18592064-18592120)
chr8 (254-302)||(29168012-29168060)
chr8 (230-302)||(31716158-31716230)
chr8 (320-356)||(32840979-32841015)
chr8 (230-302)||(36963285-36963357)
chr8 (249-300)||(6881996-6882047)
chr8 (252-302)||(27754470-27754520)
chr8 (230-302)||(11376769-11376842)
chr8 (266-302)||(10120823-10120859)
chr8 (350-414)||(14280471-14280535)
chr8 (230-302)||(27028898-27028970)
chr8 (230-302)||(35643919-35643991)
chr8 (230-302)||(40859714-40859785)
[»] chr4 (34 HSPs)
chr4 (230-299)||(25904154-25904223)
chr4 (238-302)||(13126515-13126579)
chr4 (379-451)||(34213693-34213765)
chr4 (230-302)||(54426110-54426182)
chr4 (231-298)||(21731588-21731655)
chr4 (230-299)||(27043761-27043830)
chr4 (230-302)||(15173234-15173306)
chr4 (230-302)||(17822796-17822868)
chr4 (257-302)||(39603128-39603173)
chr4 (230-302)||(26796-26868)
chr4 (230-302)||(29388681-29388753)
chr4 (230-302)||(41336827-41336899)
chr4 (238-302)||(49939890-49939954)
chr4 (230-298)||(52315128-52315196)
chr4 (230-297)||(49940098-49940165)
chr4 (350-413)||(54325107-54325170)
chr4 (230-301)||(55437144-55437215)
chr4 (241-299)||(1706692-1706750)
chr4 (252-302)||(20719770-20719820)
chr4 (252-302)||(22030270-22030320)
chr4 (232-302)||(23459694-23459764)
chr4 (231-293)||(40174633-40174695)
chr4 (252-302)||(56249590-56249640)
chr4 (30-59)||(1338301-1338330)
chr4 (237-302)||(22662077-22662142)
chr4 (237-302)||(22666556-22666621)
chr4 (239-292)||(53294054-53294107)
chr4 (33-77)||(41107-41151)
chr4 (258-302)||(21523624-21523668)
chr4 (230-302)||(24169330-24169402)
chr4 (230-302)||(29657451-29657523)
chr4 (230-302)||(42403954-42404025)
chr4 (230-302)||(49003806-49003878)
chr4 (316-356)||(49939940-49939980)
[»] chr7 (24 HSPs)
chr7 (230-302)||(19302494-19302566)
chr7 (230-302)||(34035984-34036056)
chr7 (230-296)||(27863656-27863722)
chr7 (252-298)||(21568448-21568494)
chr7 (230-299)||(4970723-4970792)
chr7 (257-298)||(27288018-27288059)
chr7 (237-302)||(34744095-34744160)
chr7 (231-296)||(36517650-36517715)
chr7 (230-298)||(46280211-46280282)
chr7 (230-299)||(48470114-48470183)
chr7 (230-302)||(5947308-5947380)
chr7 (231-287)||(18765366-18765422)
chr7 (238-302)||(19022524-19022588)
chr7 (259-298)||(17248623-17248662)
chr7 (231-302)||(33601342-33601413)
chr7 (238-300)||(49019937-49020000)
chr7 (231-289)||(18962515-18962573)
chr7 (264-302)||(33552817-33552855)
chr7 (351-408)||(1417206-1417263)
chr7 (257-298)||(14768395-14768436)
chr7 (257-298)||(22940014-22940055)
chr7 (320-356)||(34035958-34035994)
chr7 (373-413)||(37832232-37832272)
chr7 (29-65)||(46781691-46781727)
[»] chr2 (34 HSPs)
chr2 (238-302)||(30331818-30331882)
chr2 (231-302)||(1625967-1626038)
chr2 (260-302)||(5902511-5902553)
chr2 (238-302)||(18066195-18066259)
chr2 (230-302)||(42419860-42419932)
chr2 (230-302)||(42659142-42659214)
chr2 (251-302)||(7035519-7035570)
chr2 (263-302)||(28677624-28677663)
chr2 (268-302)||(40776067-40776101)
chr2 (260-302)||(44606072-44606114)
chr2 (230-299)||(7928229-7928298)
chr2 (410-451)||(27316945-27316986)
chr2 (230-299)||(27317449-27317518)
chr2 (230-302)||(750737-750809)
chr2 (230-296)||(2416386-2416452)
chr2 (252-302)||(24100995-24101045)
chr2 (260-298)||(32837393-32837431)
chr2 (252-298)||(36534839-36534885)
chr2 (250-296)||(44590097-44590143)
chr2 (269-302)||(1801734-1801767)
chr2 (265-302)||(5745751-5745788)
chr2 (237-302)||(7043668-7043733)
chr2 (241-302)||(19608575-19608636)
chr2 (229-290)||(29628672-29628733)
chr2 (265-302)||(32106766-32106803)
chr2 (237-302)||(39659447-39659512)
chr2 (257-302)||(41293121-41293166)
chr2 (230-302)||(449914-449986)
chr2 (373-413)||(12215744-12215784)
chr2 (230-302)||(13325637-13325709)
chr2 (28-56)||(28122105-28122133)
chr2 (266-302)||(29430824-29430860)
chr2 (230-302)||(31744365-31744437)
chr2 (312-356)||(43910985-43911028)
[»] scaffold0057 (2 HSPs)
scaffold0057 (231-302)||(24688-24759)
scaffold0057 (230-287)||(44115-44172)
[»] chr6 (20 HSPs)
chr6 (247-302)||(20368129-20368184)
chr6 (265-302)||(30926586-30926623)
chr6 (249-301)||(10645335-10645387)
chr6 (350-413)||(29274299-29274362)
chr6 (252-302)||(848056-848106)
chr6 (230-280)||(35069543-35069593)
chr6 (259-300)||(26559200-26559241)
chr6 (230-302)||(33089572-33089645)
chr6 (238-302)||(30536570-30536634)
chr6 (230-302)||(34430782-34430853)
chr6 (247-302)||(160911-160966)
chr6 (260-302)||(769204-769246)
chr6 (233-302)||(24982772-24982841)
chr6 (230-302)||(31624324-31624399)
chr6 (231-291)||(2455066-2455126)
chr6 (320-356)||(2455300-2455336)
chr6 (274-302)||(31624156-31624184)
chr6 (353-417)||(31624191-31624255)
chr6 (230-302)||(34404657-34404729)
chr6 (230-302)||(34910340-34910412)
[»] scaffold0320 (1 HSPs)
scaffold0320 (28-57)||(17275-17304)


Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Original strand, 10233350 - 10233936
Alignment:
Q  1 atcagaggagtgtccgtgcttcatatcggtccctaaactattaaaatcaactaaaatgttcctaaaccatactctcatttcatccatcaatttggtccct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10233350 atcagaggagtgtccgtgcttcatatcggtccctaaactattaaaataaactaaaatgttcctaaaccatactctcatttcatccatcaatttggtccct 10233449  T
Q  101 aaatcagtttactgagttatcaaattgatggattagagtatagtttagggagttttagttgatttcaatagatcaatgaccgaattggtgagtgagagat 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10233450 aaatcagtttactgagttatcaaattgatggatgagagtatagtttagggagttttagttgatttaaatagatcaatgaccgaattggtgagtgagagat 10233549  T
Q  201 agtttggggactaaattggctgtttattccttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10233550 agtttggggactaaattggctgtttattccttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatga 10233649  T
Q  301 ca-nnnnnnngttttgaaagaacttatgacattgttaataagttgttttcagcttatatgaaagcaatttgcatttatgttatcttttgctgtagaaata 399  Q
    ||        |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10233650 cattttttttgttttgaaagaacttatgacattgttaataagttgttttcagcttatacgaaagcaatttgcatttatgttatcttttgctgtagaaata 10233749  T
Q  400 gtttatacacaagcgtttgtgttatatgctgcaaataagctgtctatccaaaagggtcatagtatagcactattgtgtagtggaatttgaacatactgat 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10233750 gtttatacacaagcgtttgtgttatatgctgcaaataagctgtctatccaaaagggtcatagtatagcactattgtgtagtggaatttgaacatactgat 10233849  T
Q  500 attgtttgcaatcatcattattgagtattgagaacactgattgttttacctgttttaattttggtggacttgatggaacttcatttcagt 589  Q
    ||||||| ||   |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10233850 attgtttaca---atcactattgagtattgagaacactgattgttttacctgttttaattttagtggacttgatggaacttcatttcagt 10233936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 2295235 - 2295163
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| |||| |||| ||||||| ||||||||||| ||||||||||||||||||||||||||    
T  2295235 cttatttgagcttatctactggcataagttttgtgagactgtttgggagaacttatgaaaacagcttatgaca 2295163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 38001734 - 38001663
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgac 301  Q
    |||||| ||| ||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||    
T  38001734 cttatttgagtttatcaactgacataagttttgtgagactgtttgggagaacttatgaaaacagcttatgac 38001663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 1432654 - 1432582
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| |||||||||||| ||||||  |||||| |||||||||||||||||||||||||| ||| |||||||    
T  1432654 cttatttgagcttatccaccgacataaattttgtgagactgtttggaagaacttatgaaaatagcgtatgaca 1432582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 50644186 - 50644258
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| ||| ||||||||||||| ||||||||||| |||||||||||||||| |||| ||||    
T  50644186 cttatttgagcttatctactaacatatgttttgtgagactgtttgggagaacttatgaaaacaacttacgaca 50644258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 3887590 - 3887635
Alignment:
Q  257 gttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||    
T  3887590 gttttgtaaggctgtttggaagaacttatgaaaacatcttatgaca 3887635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 7941718 - 7941673
Alignment:
Q  257 gttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||    
T  7941718 gttttgtgagactgtttggaagaatttatgaaaacagcttatgaca 7941673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 33204325 - 33204382
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatga 287  Q
    |||||| ||||||||| ||||||||| ||||||| ||||||||||| |||||||||||    
T  33204325 cttatttgagcttatctactgacataagttttgtgagactgtttgggagaacttatga 33204382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 5721064 - 5720992
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||| | |||  |||| |||||||  |||||||||| ||||||||||||||||||||||||||    
T  5721064 cttatttgagcttaactacttgcataagttttgttggactgtttgggagaacttatgaaaacagcttatgaca 5720992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 32047023 - 32047067
Alignment:
Q  34 taaactattaaaatcaactaaaatgttcctaaaccatactctcat 78  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||    
T  32047023 taaactatttaaatcaacttaaatgttcctaaaccatactctcat 32047067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 7069553 - 7069486
Alignment:
Q  232 tattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatg 299  Q
    |||| ||||||||| ||| | ||  ||||||||||||| ||||||||||||||| |||||||||||||    
T  7069553 tatttgagcttatctactaaaattagttttgtaagactatttggaagaacttatcaaaacagcttatg 7069486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 9572049 - 9572100
Alignment:
Q  247 actgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttat 298  Q
    ||||||||| | ||||| ||||||||||| ||||||||||||||||||||||    
T  9572049 actgacataagatttgtgagactgtttgggagaacttatgaaaacagcttat 9572100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 49938864 - 49938814
Alignment:
Q  252 catatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||| ||||||| ||| ||||||| ||||||||||||||||||||||||||    
T  49938864 cataagttttgtgagattgtttgggagaacttatgaaaacagcttatgaca 49938814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 489318 - 489257
Alignment:
Q  241 ttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||| ||| |||||  |||||||||||||||| ||| |||||||||||||| |||||||||    
T  489318 ttatctactaacataatttttgtaagactgtttagaaaaacttatgaaaacaacttatgaca 489257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 29904890 - 29904821
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatg 299  Q
    |||||| ||||||||| |||  |||| ||||||| ||||||||||  ||||||||| |||||||||||||    
T  29904890 cttatttgagcttatctacttgcataagttttgtgagactgtttgagagaacttataaaaacagcttatg 29904821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 6557111 - 6557039
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| || |||||| ||| ||||| ||||||| ||||| ||||  |||||||||||||| |||||||||||    
T  6557111 cttatttgaacttatctactaacataagttttgtgagactatttgagagaacttatgaaaatagcttatgaca 6557039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 14332112 - 14332048
Alignment:
Q  238 agcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||||| |||| |||||||||||| |||||||| ||  |||||||||||||||  ||||||||    
T  14332112 agcttatctactgtcatatgttttgtgagactgttcgggtgaacttatgaaaacaaattatgaca 14332048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 406
Target Start/End: Original strand, 28689524 - 28689580
Alignment:
Q  350 agcttatatgaaagcaatttgcatttatgttatcttttgctgtagaaatagtttata 406  Q
    ||||||||||||| | | |||||||||| |||||||||| | |||||||||||||||    
T  28689524 agcttatatgaaaaccacttgcatttattttatcttttgatatagaaatagtttata 28689580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 299
Target Start/End: Complemental strand, 38247465 - 38247397
Alignment:
Q  231 ttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatg 299  Q
    ||||| || |||||| |||| |||| |||||||   ||||||||| |||||||||||||||||||||||    
T  38247465 ttatttgaacttatctactggcataagttttgtgtcactgtttgggagaacttatgaaaacagcttatg 38247397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 302
Target Start/End: Complemental strand, 12763432 - 12763389
Alignment:
Q  259 tttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||||||||||| | |||||||| |||||||||||||||||    
T  12763432 tttgtaagactgttttggagaacttacgaaaacagcttatgaca 12763389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 27976725 - 27976671
Alignment:
Q  247 actgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||||| ||||||| ||||||||||||| ||||| |||||| |||||||||||    
T  27976725 actgacataagttttgttagactgtttggaa-aacttttgaaaatagcttatgaca 27976671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 37517119 - 37517169
Alignment:
Q  252 catatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||| ||||||| ||||||| || ||||||||| |||||||||||||||||    
T  37517119 cataagttttgtgagactgtatgaaagaacttacgaaaacagcttatgaca 37517169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 45999358 - 45999416
Alignment:
Q  350 agcttatatgaaagcaatttgcatttatgttatcttttgctgtagaaatagtttataca 408  Q
    |||||||||||||||| ||||  ||||| |||||||||| | ||||||||| |||||||    
T  45999358 agcttatatgaaagcagtttgactttatcttatcttttgttatagaaatagcttataca 45999416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 275
Target Start/End: Complemental strand, 15784456 - 15784411
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttgg 275  Q
    |||||| ||||||||| ||| ||||| |||||||||||||||||||    
T  15784456 cttatttgagcttatctactaacataagttttgtaagactgtttgg 15784411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 40663809 - 40663760
Alignment:
Q  83 tccatcaatttggtccctaaatcagtttactgagttatcaaattgatgga 132  Q
    ||||||||||||||||||||| ||||| ||||||  | ||||||||||||    
T  40663809 tccatcaatttggtccctaaaccagttaactgagcgaccaaattgatgga 40663760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 451
Target Start/End: Complemental strand, 41505601 - 41505560
Alignment:
Q  410 aagcgtttgtgttatatgctgcaaataagctgtctatccaaa 451  Q
    ||||||||||| |||| |||||||||||||||| ||||||||    
T  41505601 aagcgtttgtgctataagctgcaaataagctgtttatccaaa 41505560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 41505784 - 41505751
Alignment:
Q  269 tgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||| ||||||||||||||||||||||||||    
T  41505784 tgtttgggagaacttatgaaaacagcttatgaca 41505751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 425
Target Start/End: Original strand, 172670 - 172722
Alignment:
Q  373 tttatgttatcttttgctgtagaaatagtttatacacaagcgtttgtgttata 425  Q
    |||||||||||||||| | ||||||||| ||||||| ||| |||| |||||||    
T  172670 tttatgttatcttttgttatagaaatagcttatacataagagtttatgttata 172722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 3233946 - 3234014
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttat 298  Q
    |||||| ||||||||| | || | || ||||||| |||||||| || |||||||||||||||| |||||    
T  3233946 cttatttgagcttatctagtgccgtaagttttgtgagactgttagggagaacttatgaaaacaacttat 3234014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 5741745 - 5741673
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||| | |||  |||| |||||||   ||||||||| |||||||||||||||| |||||||||    
T  5741745 cttatttgagcttaactacttgcataagttttgttgaactgtttgggagaacttatgaaaacaacttatgaca 5741673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 413
Target Start/End: Complemental strand, 7028269 - 7028229
Alignment:
Q  373 tttatgttatcttttgctgtagaaatagtttatacacaagc 413  Q
    ||||| |||||||||||| ||||||||||||||||| ||||    
T  7028269 tttattttatcttttgctatagaaatagtttatacataagc 7028229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 7119891 - 7119939
Alignment:
Q  252 catatgttttgtaagactgtttggaagaacttatgaaaacagcttatga 300  Q
    |||| ||||||| |||||||||| ||||| ||||||||||| |||||||    
T  7119891 cataagttttgtgagactgtttgcaagaatttatgaaaacaacttatga 7119939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 36514607 - 36514679
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||| ||||| |||| |||| ||||| | |||||||| || |||||||||||||| | |||||||||    
T  36514607 cttatttgagtttatctactgccataagttttttgagactgttagggagaacttatgaaaataacttatgaca 36514679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 356
Target Start/End: Original strand, 38503462 - 38503494
Alignment:
Q  324 tatgacattgttaataagttgttttcagcttat 356  Q
    |||||||||||| ||||||||||||||||||||    
T  38503462 tatgacattgttcataagttgttttcagcttat 38503494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 290
Target Start/End: Original strand, 39976141 - 39976201
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaa 290  Q
    |||||| ||| ||||| ||||||||| ||||||| | ||||||||  ||||||||||||||    
T  39976141 cttatttgagattatctactgacataagttttgtgaaactgtttgagagaacttatgaaaa 39976201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 51190977 - 51190905
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||  ||||||||||||||||  |||||||||   ||||||||| ||||  ||||||||||    
T  51190977 cttatttgagcttatatactgacatatgttttgcgagactgtttaagagaacttataaaaatggcttatgaca 51190905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 16937814 - 16937886
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| |||  |||| ||||||| ||| ||||||||||||||||||||||||||||||||||    
T  16937814 cttatttgagcttatctactagcataagttttgtgagagtgtttggaagaacttatgaaaacagcttatgaca 16937886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 10640092 - 10640020
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||| ||||| ||||||||| ||||||| | | ||||||| ||||||||||||||||||||||||||    
T  10640092 cttatttgagtttatctactgacataagttttgtgatattgtttgggagaacttatgaaaacagcttatgaca 10640020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 6521217 - 6521156
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaac 291  Q
    |||||||||||| | | ||||||||||||||||| ||| ||||||| |||||||||||||||    
T  6521217 cttattagagctgaactactgacatatgttttgtgagattgtttgggagaacttatgaaaac 6521156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 16457937 - 16457982
Alignment:
Q  257 gttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||    
T  16457937 gttttgtgagactgtttgggagaacttatgaaaacagcttatgaca 16457982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 11700301 - 11700229
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| |||||||||||||| |||| ||||||| |||||||||   |||||||||| ||||| |||||||||    
T  11700301 cttatttgagcttatccactggcataagttttgtgagactgtttcacagaacttatggaaacaacttatgaca 11700229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 15015982 - 15015922
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaa 290  Q
    |||||| ||||||||| ||||||||| | ||||| ||||||||||| ||||||||||||||    
T  15015982 cttatttgagcttatctactgacataagctttgtgagactgtttgggagaacttatgaaaa 15015922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 15246971 - 15246900
Alignment:
Q  231 ttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||| ||||||||| ||||||||| ||||| | ||| ||||||| ||||||||||||| || |||||||||    
T  15246971 ttatttgagcttatctactgacataagttttattagaatgtttgggagaacttatgaaagcaacttatgaca 15246900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 2568761 - 2568724
Alignment:
Q  265 agactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  2568761 agactgtttagaagaacttatgaaaacagcttatgaca 2568724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 29925953 - 29925908
Alignment:
Q  257 gttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||| |||| |||||| ||||||||||||||||||||||||||    
T  29925953 gttttgtgagaccgtttgggagaacttatgaaaacagcttatgaca 29925908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 32942726 - 32942661
Alignment:
Q  237 gagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| || ||||||||| |||||||  |||||||||| |||| ||||||| |||||||||||||    
T  32942726 gagcttttctactgacataagttttgtttgactgtttgggagaatttatgaatacagcttatgaca 32942661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 252 - 301
Target Start/End: Complemental strand, 39248215 - 39248166
Alignment:
Q  252 catatgttttgtaagactgtttggaagaacttatgaaaacagcttatgac 301  Q
    |||| ||||||| ||||||||||| ||||||||| |||||||||||||||    
T  39248215 cataagttttgtgagactgtttgggagaacttataaaaacagcttatgac 39248166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 39594946 - 39594881
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagct 295  Q
    |||||| ||||||||| || |||||| ||||||| ||| ||||||| | |||||||||||||||||    
T  39594946 cttatttgagcttatctaccgacataagttttgttagattgtttgggacaacttatgaaaacagct 39594881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 7674786 - 7674714
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| ||  || || ||||||| |||||| ||||||||||||||| ||||| |||||||||    
T  7674786 cttatttgagcttatctacctacttaagttttgtgagactgcttggaagaacttatggaaacaacttatgaca 7674714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 9107229 - 9107157
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||| ||||| | ||||||| ||||||| ||| ||||||| |||||| |||||||||||||| ||||    
T  9107229 cttatttgagtttatctagtgacataagttttgtgagaatgtttgggagaactcatgaaaacagcttaggaca 9107157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 413
Target Start/End: Original strand, 12595524 - 12595584
Alignment:
Q  353 ttatatgaaagcaatttgcatttatgttatcttttgctgtagaaatagtttatacacaagc 413  Q
    ||||| |||| | ||||| |||||| |||||||||||| ||||||||| ||||||||||||    
T  12595524 ttatacgaaaactatttgaatttattttatcttttgctatagaaatagcttatacacaagc 12595584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 32941609 - 32941545
Alignment:
Q  230 cttattagagctt-atccactgacatatgttttgtaagactgtttggaagaacttatgaaaacag 293  Q
    ||||||||||||| ||| ||||||||| ||| ||| |||| |||||| |||||||||||||||||    
T  32941609 cttattagagctttatctactgacataagttctgtgagaccgtttgggagaacttatgaaaacag 32941545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 35445775 - 35445843
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttat 298  Q
    |||||| ||| ||||| ||||||||| ||||||| ||||| ||||  |||| |||||||||||||||||    
T  35445775 cttatttgagtttatctactgacataagttttgtgagactctttgacagaatttatgaaaacagcttat 35445843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 41419458 - 41419386
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||| ||| |||||||||  |||||| ||| ||||||| | ||||| ||||||||||||||||||    
T  41419458 cttatttgagctaatctactgacataaattttgtgagattgtttgggataacttgtgaaaacagcttatgaca 41419386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 12425712 - 12425657
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttat 285  Q
    |||||| ||||||||| |||| |||| ||||||| ||||||||||| |||||||||    
T  12425712 cttatttgagcttatctactgtcataagttttgtgagactgtttgggagaacttat 12425657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 41534577 - 41534506
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgac 301  Q
    |||||| ||||| ||| |||||||||  |||||| ||| ||||||| | ||||| |||||||||||||||||    
T  41534577 cttatttgagctaatctactgacataaattttgtgagattgtttgggataacttgtgaaaacagcttatgac 41534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 302
Target Start/End: Original strand, 499701 - 499735
Alignment:
Q  268 ctgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||||| ||||||||||||||||||||||||||    
T  499701 ctgtttgggagaacttatgaaaacagcttatgaca 499735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 302
Target Start/End: Complemental strand, 42646995 - 42646957
Alignment:
Q  264 aagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  42646995 aagactatttggaagaacttatgaaaatagcttatgaca 42646957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 298
Target Start/End: Original strand, 17560173 - 17560214
Alignment:
Q  257 gttttgtaagactgtttggaagaacttatgaaaacagcttat 298  Q
    ||||||| | ||||||||||||| ||||||||||||||||||    
T  17560173 gttttgtgacactgtttggaagagcttatgaaaacagcttat 17560214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 32009805 - 32009760
Alignment:
Q  257 gttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||| ||||| ||||||| |||||||||||||||||| |||||    
T  32009805 gttttgtgagactatttggaaaaacttatgaaaacagcttgtgaca 32009760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 40426904 - 40426835
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatg 299  Q
    |||||| ||||||||| | |||||||  |||||| |||||||||||  |  |||||||||||||||||||    
T  40426904 cttatttgagcttatctaatgacataaattttgtgagactgtttgggggtgcttatgaaaacagcttatg 40426835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 41981661 - 41981698
Alignment:
Q  257 gttttgtaagactgtttggaagaacttatgaaaacagc 294  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  41981661 gttttgtgagactgtttgggagaacttatgaaaacagc 41981698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 3520681 - 3520645
Alignment:
Q  265 agactgtttggaagaacttatgaaaacagcttatgac 301  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  3520681 agactgtttgggagaacttatgaaaacatcttatgac 3520645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 7705929 - 7706001
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| |||| |||| |||  |||| ||||||| |  || ||||| ||||||||||||||||||||||||||    
T  7705929 cttatttgagcatatctactagcataagttttgtgacgctctttgggagaacttatgaaaacagcttatgaca 7706001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 9202679 - 9202751
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| |||||||||  ||| |||| ||||||||||||| ||| | | |||| ||| |||||||||||||||    
T  9202679 cttatttgagcttatctcctggcataagttttgtaagactatttcggaaaactaatggaaacagcttatgaca 9202751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 299
Target Start/End: Original strand, 24030144 - 24030176
Alignment:
Q  267 actgtttggaagaacttatgaaaacagcttatg 299  Q
    ||||||||| |||||||||||||||||||||||    
T  24030144 actgtttgggagaacttatgaaaacagcttatg 24030176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 32372741 - 32372689
Alignment:
Q  240 cttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaaca 292  Q
    |||||| |||| |||| ||||||| ||||||||||||||||||| | ||||||    
T  32372741 cttatctactggcataagttttgtgagactgtttggaagaactttttaaaaca 32372689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 37112357 - 37112397
Alignment:
Q  379 ttatcttttgctgtagaaatagtttatacacaagcgtttgt 419  Q
    |||||||||||||||||||||| ||||||| ||||| ||||    
T  37112357 ttatcttttgctgtagaaatagcttatacataagcgcttgt 37112397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 18405763 - 18405825
Alignment:
Q  231 ttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacag 293  Q
    ||||| ||||||||| ||||||||| ||||||| |||||||||| ||||||||||||||||||    
T  18405763 ttatttgagcttatctactgacataagttttgtgagactgtttgcaagaacttatgaaaacag 18405825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 31365119 - 31365191
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| | || |||| ||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  31365119 cttatttgagcttatctattggcataagttttgtgagactgtttgggagaacttatgaaagcagcttatgaca 31365191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 34610737 - 34610809
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| ||||||||| ||||||||  ||| ||||| ||||||||||||||| ||||||||||    
T  34610737 cttatttgagcttatctactgacataagttttgtacaactatttgggagaacttatgaaaactgcttatgaca 34610809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 297
Target Start/End: Complemental strand, 37795726 - 37795667
Alignment:
Q  238 agcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagctta 297  Q
    |||||||||||||||||| || ||||||||||||||||||| |||||| |||||| ||||    
T  37795726 agcttatccactgacataagtcttgtaagactgtttggaaggacttattaaaacaactta 37795667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 402475 - 402545
Alignment:
Q  232 tattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||| ||| ||||| ||| ||||| |||||| |||||||||||| ||||| ||||||||||||||||||||    
T  402475 tatttgagtttatcaactaacataagttttgcaagactgtttgggagaacgtatgaaaacagcttatgaca 402545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 260 - 302
Target Start/End: Complemental strand, 24624318 - 24624276
Alignment:
Q  260 ttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  24624318 ttgtaagactgtttggaagagcttatgaaaacagcttatgaca 24624276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 260 - 302
Target Start/End: Complemental strand, 45541679 - 45541637
Alignment:
Q  260 ttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  45541679 ttgtaagactgtttagaagaacttatgaaaacagcttatgaca 45541637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 251 - 296
Target Start/End: Complemental strand, 43046783 - 43046738
Alignment:
Q  251 acatatgttttgtaagactgtttggaagaacttatgaaaacagctt 296  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  43046783 acatatgttttgtgagactgtttgggagaacttatgaaaacagctt 43046738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 21367784 - 21367734
Alignment:
Q  252 catatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||| |||||||  |||||||||| ||||||||||||||||||||||||||    
T  21367784 cataagttttgtgggactgtttgggagaacttatgaaaacagcttatgaca 21367734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 22203566 - 22203497
Alignment:
Q  232 tattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||| ||||||||| || |||||   |||||| |||||||||||| |||||||||||||||||||||||||    
T  22203566 tattcgagcttatctaccgacattaattttgtgagactgtttgga-gaacttatgaaaacagcttatgaca 22203497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 9832686 - 9832755
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatg 299  Q
    |||||| ||||||||  | ||||||| ||||||| | ||||||||| ||||||| |||||||||||||||    
T  9832686 cttatttgagcttatttattgacataagttttgtcaaactgtttgggagaacttttgaaaacagcttatg 9832755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 24085269 - 24085338
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatg 299  Q
    |||||| ||||||||| || | |||| ||||||| |||||| || | |||||||||||||||||||||||    
T  24085269 cttatttgagcttatctaccggcataagttttgtgagactggtttggagaacttatgaaaacagcttatg 24085338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 30444025 - 30443960
Alignment:
Q  237 gagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||||| |||| ||||  ||| || ||||||||||| ||| ||||||||||||||||||||||    
T  30444025 gagcttatctactggcataaatttggtgagactgtttggtagagcttatgaaaacagcttatgaca 30443960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 38902197 - 38902133
Alignment:
Q  237 gagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||||| |||| |||| |||||| || |||||||||||||| ||||||||||||| |||||||    
T  38902197 gagcttatctactggcataagttttgcaa-actgtttggaagaatttatgaaaacagcatatgaca 38902133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 54837001 - 54837038
Alignment:
Q  265 agactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||||||||||||| |||||||||||||||||||||    
T  54837001 agactgtttggaagaatttatgaaaacagcttatgaca 54837038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 13715503 - 13715575
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| || |||||| |||  |||||||||||| ||||||||||| |||||||   ||||||||||||||||    
T  13715503 cttatttgatcttatctactagcatatgttttgtgagactgtttggtagaacttcctaaaacagcttatgaca 13715575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 39980861 - 39980797
Alignment:
Q  237 gagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgac 301  Q
    ||||||||| |||  |||| ||||||| |||||||||   |||||||||||||||||||||||||    
T  39980861 gagcttatctactagcataagttttgtgagactgtttaagagaacttatgaaaacagcttatgac 39980797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 451
Target Start/End: Original strand, 42747876 - 42747948
Alignment:
Q  379 ttatcttttgctgtagaaatagtttatacacaagcgtttgtgttatatgctgcaaataagctgtctatccaaa 451  Q
    ||||||| | || ||||||||| ||||||| | ||||||||| |||| | |||||||||||||| ||||||||    
T  42747876 ttatcttattctatagaaatagcttatacataggcgtttgtgctataagttgcaaataagctgtttatccaaa 42747948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 42799909 - 42799960
Alignment:
Q  241 ttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaaca 292  Q
    ||||| ||||||||||||||||| | ||| ||||| ||||||||||||||||    
T  42799909 ttatctactgacatatgttttgtgaaactctttgggagaacttatgaaaaca 42799960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 5448583 - 5448542
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgt 271  Q
    |||||| ||||||||| ||||||||| |||||||||||||||    
T  5448583 cttatttgagcttatctactgacataagttttgtaagactgt 5448542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 37389311 - 37389250
Alignment:
Q  241 ttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||| || |||||| ||||||| ||||| || || |||||||||||||||| |||||||||    
T  37389311 ttatctacagacataagttttgtgagactcttcgggagaacttatgaaaacaacttatgaca 37389250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 300
Target Start/End: Original strand, 47904049 - 47904082
Alignment:
Q  267 actgtttggaagaacttatgaaaacagcttatga 300  Q
    ||||||||| ||||||||||||||||||||||||    
T  47904049 actgtttgggagaacttatgaaaacagcttatga 47904082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 466326 - 466266
Alignment:
Q  236 agagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagctt 296  Q
    |||||||| |||||||||||  |||||| ||||||||||| | ||||||  ||||||||||    
T  466326 agagcttaaccactgacatagattttgtgagactgtttgggataacttacaaaaacagctt 466266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 20257647 - 20257603
Alignment:
Q  258 ttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||||| ||||||||||||| ||||| ||||||    
T  20257647 ttttgtgagactgtttgggagaacttatgaaagcagctaatgaca 20257603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 20880615 - 20880543
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| |||  |||| ||||  | ||||| ||||| ||||| ||||||||||||||||||||    
T  20880615 cttatttgagcttatctacttgcataagtttccttagactatttgggagaacctatgaaaacagcttatgaca 20880543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 24684753 - 24684825
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| |||| |||| ||||| | ||||  |||||  ||||||||||||||| |||||||||    
T  24684753 cttatttgagcttatctactggcataagttttttgagacattttggttgaacttatgaaaacaacttatgaca 24684825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 26878339 - 26878267
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| ||||||||| |||  || | ||||||||  ||||||| |||||| |||||||||||    
T  26878339 cttattcgagcttatctactgacataagttgcgtgaaactgtttgagagaacttgtgaaaatagcttatgaca 26878267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 31365268 - 31365312
Alignment:
Q  258 ttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| | ||||||||| |||||||||||| |||||||||||||    
T  31365268 ttttgtgacactgtttgggagaacttatgaatacagcttatgaca 31365312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 34235024 - 34235096
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| ||| ||||| ||||||   ||| |||||  |||||||||||| |||||||||||||    
T  34235024 cttattcgagcttatctactaacataagttttgcgtgaccgtttgagagaacttatgaatacagcttatgaca 34235096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 34637944 - 34637984
Alignment:
Q  258 ttttgtaagactgtttggaagaacttatgaaaacagcttat 298  Q
    |||||| ||| ||||||| ||||||||||||||||||||||    
T  34637944 ttttgtgagattgtttgggagaacttatgaaaacagcttat 34637984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 37689368 - 37689296
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||  ||||| ||| ||| ||| | ||||| ||| |||||||| |||||||||||||||||    
T  37689368 cttatttgagcttatttactgaaataggttctgtgatactgtatgggagaacttaagaaaacagcttatgaca 37689296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 39602142 - 39602214
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||| | |||| |||  ||||||| || || ||||||||| |||||||| |||||||||||||    
T  39602142 cttatttgagcttagctactggcatcagttttgtgaggctatttggaagagcttatgaagacagcttatgaca 39602214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 26771397 - 26771332
Alignment:
Q  237 gagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||||| || | |||| ||||||| ||||||||||| ||||||||||||||||||||||||||    
T  26771397 gagcttatctacgggcataagttttgtgagactgtttgggagaacttatgaaaacagcttatgaca 26771332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 1058008 - 1058080
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| ||| ||||| ||||||| ||||||||||| ||||||| ||||||| ||||||||||    
T  1058008 cttatttgagcttatctacttacataagttttgtgagactgtttgggagaacttttgaaaactgcttatgaca 1058080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 30251385 - 30251453
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttat 298  Q
    |||||| ||||||||| ||||||||| |||| || ||||||||||| |||||||| |||||||||||||    
T  30251385 cttatttgagcttatctactgacataagtttcgtgagactgtttgggagaacttacgaaaacagcttat 30251453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 35534544 - 35534616
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| ||| ||||| ||||||| ||||||||||  ||||||| ||||||||||||||||||    
T  35534544 cttatttgagcttatctactaacataagttttgtgagactgtttgagagaacttgtgaaaacagcttatgaca 35534616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 38648479 - 38648418
Alignment:
Q  241 ttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||| ||||||||| ||||||| ||||||||||| ||| ||||||||||||||| ||||||    
T  38648479 ttatctactgacataagttttgtgagactgtttgggagaccttatgaaaacagctcatgaca 38648418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 251 - 298
Target Start/End: Complemental strand, 28763486 - 28763439
Alignment:
Q  251 acatatgttttgtaagactgtttggaagaacttatgaaaacagcttat 298  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||||||||    
T  28763486 acataagttttgtgagactgtttgggagaacttatgaaaacagcttat 28763439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 230 - 293
Target Start/End: Original strand, 43717865 - 43717928
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacag 293  Q
    |||||| ||||||||| | ||||||| ||||||| ||||| ||||| |||||||||||||||||    
T  43717865 cttatttgagcttatctattgacataagttttgtgagactatttgggagaacttatgaaaacag 43717928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 32840924 - 32840989
Alignment:
Q  237 gagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||||| ||| ||| | ||||||  ||||||||||| |||||||||||||||| |||||||||    
T  32840924 gagcttatctactcacacaagttttgcgagactgtttgggagaacttatgaaaacaacttatgaca 32840989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 10758188 - 10758260
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| || ||||||  || ||||| ||||||| ||||||||||  |||| |||||||||||||||||||||    
T  10758188 cttatttgaacttatctgctaacataagttttgtgagactgtttgatagaatttatgaaaacagcttatgaca 10758260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 439
Target Start/End: Original strand, 18592064 - 18592120
Alignment:
Q  383 cttttgctgtagaaatagtttatacacaagcgtttgtgttatatgctgcaaataagc 439  Q
    |||||||||||||||||| ||||||| |||| ||||||  ||| |||||||||||||    
T  18592064 cttttgctgtagaaatagattatacataagcatttgtgccataagctgcaaataagc 18592120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 29168012 - 29168060
Alignment:
Q  254 tatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||||||| ||||||||||| ||||||||| ||||||| ||||||||    
T  29168012 tatgttttgtgagactgtttgggagaacttataaaaacagattatgaca 29168060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 31716158 - 31716230
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| | || ||||| |||| | ||||||||| | ||||||| ||||||||||||||||||    
T  31716158 cttatttgagcttatctattggcatattttttttgagactgtttcggagaacttttgaaaacagcttatgaca 31716230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 32840979 - 32841015
Alignment:
Q  320 aacttatgacattgttaataagttgttttcagcttat 356  Q
    |||||||||||||||| ||||||||||||||||||||    
T  32840979 aacttatgacattgttcataagttgttttcagcttat 32841015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 36963285 - 36963357
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||| ||| |||| |||| ||||||| ||||||||||| ||||||||  |||||||||| |||||    
T  36963285 cttatttgagctaatctactggcataagttttgtgagactgtttgggagaacttacaaaaacagcttttgaca 36963357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 300
Target Start/End: Complemental strand, 6882047 - 6881996
Alignment:
Q  249 tgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatga 300  Q
    ||||||| ||||||| ||||||||||| ||||| ||||||||||||| ||||    
T  6882047 tgacataagttttgtgagactgtttgggagaacctatgaaaacagctcatga 6881996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 27754520 - 27754470
Alignment:
Q  252 catatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||| ||||||| ||||| ||||| ||||||||||||||||| ||||||||    
T  27754520 cataagttttgtgagactatttgggagaacttatgaaaacagtttatgaca 27754470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 11376842 - 11376769
Alignment:
Q  230 cttattagagcttatccactgacatatgtt-ttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| ||||| ||| ||| |||| ||||| ||||| |||||||||||||| ||||| |||||    
T  11376842 cttatttgagcttatctactgatataagttcttgtgagactatttgggagaacttatgaaaatagcttgtgaca 11376769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 10120859 - 10120823
Alignment:
Q  266 gactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||||||  ||||||||||||||||||||||||||    
T  10120859 gactgtttgagagaacttatgaaaacagcttatgaca 10120823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 414
Target Start/End: Original strand, 14280471 - 14280535
Alignment:
Q  350 agcttatatgaaagcaatttgcatttatgttatcttttgctgtagaaatagtttatacacaagcg 414  Q
    ||||||||||||| ||||||   || || |||||||||||| ||||||||| ||||||| |||||    
T  14280471 agcttatatgaaaacaatttaatttaattttatcttttgctatagaaataggttatacataagcg 14280535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 27028970 - 27028898
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||| |||||||||| |||| |||| || ||| ||||||| |||| || ||||||||||||| ||||    
T  27028970 cttatttgagtttatccactggcataagtttagtgagattgtttgggagaaattctgaaaacagcttaggaca 27028898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 35643919 - 35643991
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| | ||||||| |||| ||||  |||||| ||||||||||| | |||||||||||| || ||||||||    
T  35643919 cttatttgggcttatctactggcataatttttgtgagactgtttgggataacttatgaaaatagtttatgaca 35643991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 40859714 - 40859785
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| |||||||||  || ||||| ||||||| || |||||| | ||| ||||||||||||||||||||||    
T  40859714 cttatttgagcttatctgctaacataagttttgtgaggctgttttggaga-cttatgaaaacagcttatgaca 40859785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 25904154 - 25904223
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatg 299  Q
    |||||| ||||||||||| |||||||  |||||| ||||||||||| ||| |||||||||||||||||||    
T  25904154 cttatttgagcttatccaatgacataaattttgtgagactgtttgggagagcttatgaaaacagcttatg 25904223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 13126515 - 13126579
Alignment:
Q  238 agcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| | ||| ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||    
T  13126515 agcttacctactaacataagttttgtgagactgtttggaagaacttataaaaacagcttatgaca 13126579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 379 - 451
Target Start/End: Original strand, 34213693 - 34213765
Alignment:
Q  379 ttatcttttgctgtagaaatagtttatacacaagcgtttgtgttatatgctgcaaataagctgtctatccaaa 451  Q
    |||||||||||| ||||||||| ||||||||| || ||||||||||| |||||||||||| ||  ||||||||    
T  34213693 ttatcttttgctatagaaatagcttatacacacgcatttgtgttataagctgcaaataagttgcttatccaaa 34213765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 54426182 - 54426110
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| |||| |||| ||||||| |||||| |||| |||||||| |||||||||||||||||    
T  54426182 cttatttgagcttatctactggcataagttttgtgagactgcttgggagaacttaggaaaacagcttatgaca 54426110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 21731588 - 21731655
Alignment:
Q  231 ttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttat 298  Q
    ||||| |||| |||| ||||||||| ||||||| ||| ||||||| ||||||||||||||||||||||    
T  21731588 ttatttgagcatatctactgacataagttttgtgagattgtttgggagaacttatgaaaacagcttat 21731655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 27043761 - 27043830
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatg 299  Q
    |||||| ||||||||| ||||||||| ||||||| | |||||||||||||| ||||| ||| ||||||||    
T  27043761 cttatttgagcttatctactgacataagttttgtgaaactgtttggaagaagttatgcaaatagcttatg 27043830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 15173234 - 15173306
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| || |||||| ||||||||| ||||||| ||||||||||| |||  ||||||||| |||||||||||    
T  15173234 cttatttgaacttatctactgacataagttttgtgagactgtttgggagactttatgaaaatagcttatgaca 15173306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 17822796 - 17822868
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| ||||||||| ||| ||| ||||| ||| | ||||| ||||||||||||||||||||    
T  17822796 cttatttgagcttatctactgacataagttctgtgagactatttaggagaacatatgaaaacagcttatgaca 17822868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 39603128 - 39603173
Alignment:
Q  257 gttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||| ||||||||||| |||||||| |||||||||||||||||    
T  39603128 gttttgtgagactgtttgggagaacttaggaaaacagcttatgaca 39603173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 26796 - 26868
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| |||| |||| | ||||| |||||||||   |||| |||||||||||||||||||||    
T  26796 cttatttgagcttatcaactggcataagctttgttagactgtttccgagaaattatgaaaacagcttatgaca 26868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 29388753 - 29388681
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| || |||||| ||| ||||| ||||||||||| ||||||| |||||||| |||| ||| ||||||||    
T  29388753 cttatttgaccttatctactaacataagttttgtaagattgtttgggagaacttacgaaagcagtttatgaca 29388681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 41336899 - 41336827
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||| ||||| ||| ||||| ||||||| |||  ||| ||||||||||| |||||||||||||||||    
T  41336899 cttatttgagtttatctactcacataagttttgtgagatagttaggaagaacttaagaaaacagcttatgaca 41336827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 49939890 - 49939954
Alignment:
Q  238 agcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||||| |||  |||| | ||||| ||||| |||||||||||||||||||| |||||||||||    
T  49939890 agcttatctactagcataagctttgtgagactatttggaagaacttatgaaaagagcttatgaca 49939954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 52315128 - 52315196
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttat 298  Q
    |||||| ||| ||||| |||||| || ||||||| ||| ||||||||||||||||| |||||| |||||    
T  52315128 cttatttgagtttatctactgacgtaagttttgtgagattgtttggaagaacttatcaaaacaacttat 52315196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 49940098 - 49940165
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagctta 297  Q
    |||||| ||||||| |  || ||||| ||||||| ||||||||||  |||||||||||||||||||||    
T  49940098 cttatttgagcttacctgctaacataagttttgtgagactgtttgagagaacttatgaaaacagctta 49940165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 413
Target Start/End: Original strand, 54325107 - 54325170
Alignment:
Q  350 agcttatatgaaagcaatttgcatttatgttatcttttgctgtagaaatagtttatacacaagc 413  Q
    ||||||||||||| || ||||  ||||| ||||||||||   ||||||||||||||||||||||    
T  54325107 agcttatatgaaaacagtttgactttattttatcttttgtaatagaaatagtttatacacaagc 54325170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 55437215 - 55437144
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgac 301  Q
    |||||| ||| ||||| |||| |||| ||||||| | | |||||| ||||||||||||||||| ||||||||    
T  55437215 cttatttgagtttatctactgccataagttttgtgaaattgtttgaaagaacttatgaaaacaacttatgac 55437144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 299
Target Start/End: Complemental strand, 1706750 - 1706692
Alignment:
Q  241 ttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatg 299  Q
    ||||| ||||||||| ||||||| |||| |||||  |||| ||||||||||||||||||    
T  1706750 ttatctactgacataagttttgtgagacggtttgagagaaattatgaaaacagcttatg 1706692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 20719820 - 20719770
Alignment:
Q  252 catatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||| |||||||  |||| |||||||||||||| |||||||||||||||||    
T  20719820 cataagttttgtgcgactatttggaagaacttaagaaaacagcttatgaca 20719770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 22030320 - 22030270
Alignment:
Q  252 catatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||| ||||||| || || ||||| ||||||||||||||||||||||||||    
T  22030320 cataagttttgtgagcctatttgggagaacttatgaaaacagcttatgaca 22030270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 23459764 - 23459694
Alignment:
Q  232 tattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||| ||||||||| |||  |||| || | |||||||||||| | |||||||||||||| |||||||||||    
T  23459764 tatttgagcttatctactagcataagtatggtaagactgtttcggagaacttatgaaaaaagcttatgaca 23459694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 40174695 - 40174633
Alignment:
Q  231 ttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacag 293  Q
    ||||| ||| ||||| ||| ||||| ||||||| ||||||||||| | |||||||||||||||    
T  40174695 ttatttgagtttatctactaacataagttttgtgagactgtttgggataacttatgaaaacag 40174633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 56249640 - 56249590
Alignment:
Q  252 catatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||| ||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  56249640 cataagttttgtgagattgtttggaacaacttatcaaaacagcttatgaca 56249590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 1338330 - 1338301
Alignment:
Q  30 tccctaaactattaaaatcaactaaaatgt 59  Q
    ||||||||||||||||||||||||||||||    
T  1338330 tccctaaactattaaaatcaactaaaatgt 1338301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 22662142 - 22662077
Alignment:
Q  237 gagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||||| |||||| || |||| || |||||||||||  |||||||||||| ||| ||||||||    
T  22662142 gagcttatctactgacgtaagtttagtgagactgtttgggggaacttatgaaatcagtttatgaca 22662077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 22666621 - 22666556
Alignment:
Q  237 gagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||||| |||||| || |||| || |||||||||||  |||||||||||| ||| ||||||||    
T  22666621 gagcttatctactgacgtaagtttagtgagactgtttgggggaacttatgaaatcagtttatgaca 22666556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 53294054 - 53294107
Alignment:
Q  239 gcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaaca 292  Q
    ||||||| ||||||||  ||||||||||||||||||| | |||| |||||||||    
T  53294054 gcttatctactgacatgagttttgtaagactgtttgggaaaactcatgaaaaca 53294107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 41151 - 41107
Alignment:
Q  33 ctaaactattaaaatcaactaaaatgttcctaaaccatactctca 77  Q
    ||||||| ||||||||||||||||||| ||||||| || ||||||    
T  41151 ctaaactgttaaaatcaactaaaatgtccctaaactatgctctca 41107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 21523668 - 21523624
Alignment:
Q  258 ttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| | |||||||||||||| ||||||||||| |||||||||    
T  21523668 ttttgtgacactgtttggaagaatttatgaaaacaacttatgaca 21523624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 24169402 - 24169330
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||||||| ||||| |||| |||| ||||||| ||||| ||||  ||||||| | |||| |||||||||||    
T  24169402 cttattagagtttatctactggcataagttttgtgagactatttgagagaacttttaaaaatagcttatgaca 24169330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 29657523 - 29657451
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| ||  ||| | ||||||| ||| || |||  ||||||||||||||||||||||||||    
T  29657523 cttatttgagcttatctaccaacacaagttttgtgagattgcttgagagaacttatgaaaacagcttatgaca 29657451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 42403954 - 42404025
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| ||||||||| |||||||  | || ||||| |||| || ||||||||||||||||||    
T  42403954 cttatttgagcttatcaactgacataagttttgtgtg-ctatttgggagaatttctgaaaacagcttatgaca 42404025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 49003806 - 49003878
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| |||||||||||||||| || ||||||| | || |||||| ||||  |||||||| ||| |||||||    
T  49003806 cttatttgagcttatccactgacgtaagttttgtgaaacggtttgggagaaaatatgaaaagagcgtatgaca 49003878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 49939940 - 49939980
Alignment:
Q  316 aaagaacttatgacattgttaataagttgttttcagcttat 356  Q
    ||||| |||||||||||||| ||||| ||||||||||||||    
T  49939940 aaagagcttatgacattgttcataagctgttttcagcttat 49939980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 19302494 - 19302566
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| ||||||||| ||||||| ||| | ||||| |||| |||||||||||||||||||||    
T  19302494 cttatttgagcttatctactgacataagttttgtgagaatatttgggagaatttatgaaaacagcttatgaca 19302566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 34036056 - 34035984
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| |||||||||||| |||| |||||  ||||||||||||||||||| | |||||||||    
T  34036056 cttatttgagcttatctactgacatatgtattgtgagactacttggaagaacttatgaaaataacttatgaca 34035984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 230 - 296
Target Start/End: Original strand, 27863656 - 27863722
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagctt 296  Q
    |||||| |||||||||||||| |||| ||||||| ||||| ||||  ||||||||||||||||||||    
T  27863656 cttatttgagcttatccactggcataagttttgtgagactatttgagagaacttatgaaaacagctt 27863722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 21568448 - 21568494
Alignment:
Q  252 catatgttttgtaagactgtttggaagaacttatgaaaacagcttat 298  Q
    ||||| |||||| ||||||||||| ||||||||||||||||||||||    
T  21568448 catatattttgtgagactgtttgggagaacttatgaaaacagcttat 21568494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 4970723 - 4970792
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatg 299  Q
    |||||| |||||||||   ||||||| || |||| ||||||||||| |||||||||||||||| ||||||    
T  4970723 cttatttgagcttatctcgtgacataagtcttgtgagactgtttgggagaacttatgaaaacaacttatg 4970792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 257 - 298
Target Start/End: Complemental strand, 27288059 - 27288018
Alignment:
Q  257 gttttgtaagactgtttggaagaacttatgaaaacagcttat 298  Q
    ||||||| ||||| ||||||||||||||||||||||||||||    
T  27288059 gttttgtgagactatttggaagaacttatgaaaacagcttat 27288018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 34744160 - 34744095
Alignment:
Q  237 gagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||||| ||| ||||| | ||||| |||||||||||||||||| ||||||| | |||||||||    
T  34744160 gagcttatctactaacataagatttgtgagactgtttggaagaactaatgaaaagaacttatgaca 34744095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 36517715 - 36517650
Alignment:
Q  231 ttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagctt 296  Q
    ||||| ||||||| | |||| |||| ||||| ||||||||||||| ||||||||| ||||||||||    
T  36517715 ttatttgagcttagctactggcataagttttctaagactgtttgggagaacttattaaaacagctt 36517650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 46280211 - 46280282
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaac---ttatgaaaacagcttat 298  Q
    |||||| ||| |||||  |||||||||||||||| ||||||||||| |||||   |||||||||||||||||    
T  46280211 cttatttgagtttatctgctgacatatgttttgtgagactgtttgggagaacttattatgaaaacagcttat 46280282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 48470183 - 48470114
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatg 299  Q
    |||||| ||||||||| |  |||||| ||||| | ||| ||||||| |||||||||||||||||||||||    
T  48470183 cttatttgagcttatctatagacataagttttatgagattgtttgggagaacttatgaaaacagcttatg 48470114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 5947380 - 5947308
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| | ||  ||| ||||| | ||||||||||||||||||| ||||| ||||||||||||    
T  5947380 cttatttgagcttatctattggtataagttttatgagactgtttggaagaacttttgaaaccagcttatgaca 5947308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 18765422 - 18765366
Alignment:
Q  231 ttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatga 287  Q
    ||||| ||||||||| | ||||||| ||||||| ||||||||||| |||||||||||    
T  18765422 ttatttgagcttatctattgacataagttttgtgagactgtttgggagaacttatga 18765366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 19022524 - 19022588
Alignment:
Q  238 agcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||||| ||||||||  ||||||| ||| ||||||| |||| ||||||||||| |||||||||    
T  19022524 agcttatctactgacatgagttttgtgagattgtttgggagaatttatgaaaacaacttatgaca 19022588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 17248662 - 17248623
Alignment:
Q  259 tttgtaagactgtttggaagaacttatgaaaacagcttat 298  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  17248662 tttgtaagactgtttgggagaacttataaaaacagcttat 17248623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 33601342 - 33601413
Alignment:
Q  231 ttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||| ||||||||| | || |||| ||||||| ||||| |||   ||||||||||||||||||||||||||    
T  33601342 ttatttgagcttatctattggcataagttttgtgagactcttttcgagaacttatgaaaacagcttatgaca 33601413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 300
Target Start/End: Complemental strand, 49020000 - 49019937
Alignment:
Q  238 agcttatccactgacatatgttttgtaagactgtttggaagaacttat-gaaaacagcttatga 300  Q
    ||||||||  |||||||||||||||| ||||||||||| ||||||| | ||||| |||||||||    
T  49020000 agcttatctgctgacatatgttttgtgagactgtttgggagaacttgtggaaaaaagcttatga 49019937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 18962515 - 18962573
Alignment:
Q  231 ttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaa 289  Q
    ||||| || |||||| ||||||||| ||||||| ||||||||| | |||||||||||||    
T  18962515 ttattcgatcttatctactgacataagttttgttagactgttttggagaacttatgaaa 18962573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 302
Target Start/End: Original strand, 33552817 - 33552855
Alignment:
Q  264 aagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  33552817 aagactgtttgggagaacttacgaaaacagcttatgaca 33552855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 1417263 - 1417206
Alignment:
Q  351 gcttatatgaaagcaatttgcatttatgttatcttttgctgtagaaatagtttataca 408  Q
    |||||||||||| |||||||  ||||| |||||||||| | || ||||||||||||||    
T  1417263 gcttatatgaaaacaatttgactttattttatcttttgttatataaatagtttataca 1417206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 298
Target Start/End: Complemental strand, 14768436 - 14768395
Alignment:
Q  257 gttttgtaagactgtttggaagaacttatgaaaacagcttat 298  Q
    ||||||| | ||||||||||||| ||||||||||||||||||    
T  14768436 gttttgtgacactgtttggaagagcttatgaaaacagcttat 14768395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 298
Target Start/End: Original strand, 22940014 - 22940055
Alignment:
Q  257 gttttgtaagactgtttggaagaacttatgaaaacagcttat 298  Q
    ||||||| ||||| |||||||||||||||||||||| |||||    
T  22940014 gttttgtgagactatttggaagaacttatgaaaacaacttat 22940055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 34035994 - 34035958
Alignment:
Q  320 aacttatgacattgttaataagttgttttcagcttat 356  Q
    |||||||||||||||| |||||||||||||| |||||    
T  34035994 aacttatgacattgttcataagttgttttcaacttat 34035958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 413
Target Start/End: Original strand, 37832232 - 37832272
Alignment:
Q  373 tttatgttatcttttgctgtagaaatagtttatacacaagc 413  Q
    ||||| |||| ||||||| ||||||||||||||||||||||    
T  37832232 tttattttatattttgctatagaaatagtttatacacaagc 37832272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 46781691 - 46781727
Alignment:
Q  29 gtccctaaactattaaaatcaactaaaatgttcctaa 65  Q
    |||||||| |||||||||||||||||||||| |||||    
T  46781691 gtccctaatctattaaaatcaactaaaatgtccctaa 46781727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 30331882 - 30331818
Alignment:
Q  238 agcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||||| ||||||||| ||||||| ||||||||||| |||||||||||||| | |||||||||    
T  30331882 agcttatctactgacataagttttgtgagactgtttgggagaacttatgaaaaaaccttatgaca 30331818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 1626038 - 1625967
Alignment:
Q  231 ttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||| |||||||||| |||||||| ||||||||||||| ||||  |||||||||||||  |||||||||||    
T  1626038 ttatttgagcttatcccctgacataagttttgtaagactatttgagagaacttatgaaagtagcttatgaca 1625967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 5902511 - 5902553
Alignment:
Q  260 ttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  5902511 ttgtgagactgtttggaagaacttatgaaaacagcttatgaca 5902553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 18066259 - 18066195
Alignment:
Q  238 agcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||||| ||||||||| ||||||| | ||||||| | | ||||||||||||||||||||||||    
T  18066259 agcttatctactgacataagttttgtgaaactgttttgtacaacttatgaaaacagcttatgaca 18066195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 42419932 - 42419860
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||| |||||  |||||||| ||||| | ||||||||||| |||||||| |||||||||||||||||    
T  42419932 cttatttgagtttatcttctgacataagttttttgagactgtttgggagaacttacgaaaacagcttatgaca 42419860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 42659142 - 42659214
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||  |||| |||| ||||||| ||||||||||| |||| || ||||||||||||||||||    
T  42659142 cttatttgagcttatttactggcataagttttgtgagactgtttgggagaagttttgaaaacagcttatgaca 42659214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 7035519 - 7035570
Alignment:
Q  251 acatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||| ||||||| ||||||||| |||||||||||| |||||||||||||||    
T  7035519 acataagttttgtgagactgttttgaagaacttatggaaacagcttatgaca 7035570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 28677624 - 28677663
Alignment:
Q  263 taagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  28677624 taagactgtttgggagaacttatgaaaacagcttatgaca 28677663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 302
Target Start/End: Original strand, 40776067 - 40776101
Alignment:
Q  268 ctgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||||||||||||||||||||||||||||||||    
T  40776067 ctgtttggaagaacttatgaaaacagcttatgaca 40776101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 44606072 - 44606114
Alignment:
Q  260 ttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||| ||||||||||||||||||||||||||| |||||||||    
T  44606072 ttgtacgactgtttggaagaacttatgaaaacaacttatgaca 44606114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 7928229 - 7928298
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatg 299  Q
    |||||| ||||||||| | ||||||| ||| ||| |||||||| | |||||||| |||||||||||||||    
T  7928229 cttatttgagcttatctattgacataagttgtgtgagactgttagaaagaacttttgaaaacagcttatg 7928298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 410 - 451
Target Start/End: Complemental strand, 27316986 - 27316945
Alignment:
Q  410 aagcgtttgtgttatatgctgcaaataagctgtctatccaaa 451  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  27316986 aagcgtttgtgttataagctgcaaataagttgtctatccaaa 27316945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 27317518 - 27317449
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatg 299  Q
    |||||| ||||||||| || |||||| ||||| | ||||||||||  |||||||||||||||| ||||||    
T  27317518 cttatttgagcttatctaccgacataagttttatgagactgtttgagagaacttatgaaaacaacttatg 27317449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 750809 - 750737
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||| |||||  ||| |||||||||||| ||| |||||| ||||||||||||||| |||| ||||||    
T  750809 cttatttgagtttatctcctggcatatgttttgtgagagtgtttgcaagaacttatgaaaagagctaatgaca 750737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 2416452 - 2416386
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagctt 296  Q
    |||||| ||| ||||| ||| ||||| ||||||| | |||| |||||||||||||| ||||||||||    
T  2416452 cttatttgagtttatctactaacataagttttgtgaaactgcttggaagaacttattaaaacagctt 2416386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 24101045 - 24100995
Alignment:
Q  252 catatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||| ||||||| ||||||||||| |||||||||| ||||| |||||||||    
T  24101045 cataagttttgtgagactgtttgggagaacttatggaaacaccttatgaca 24100995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 298
Target Start/End: Complemental strand, 32837431 - 32837393
Alignment:
Q  260 ttgtaagactgtttggaagaacttatgaaaacagcttat 298  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  32837431 ttgtgagactgtttgggagaacttatgaaaacagcttat 32837393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 36534885 - 36534839
Alignment:
Q  252 catatgttttgtaagactgtttggaagaacttatgaaaacagcttat 298  Q
    |||| ||||||| ||||||||||| | ||||||||||||||||||||    
T  36534885 cataagttttgtgagactgtttgggataacttatgaaaacagcttat 36534839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 44590143 - 44590097
Alignment:
Q  250 gacatatgttttgtaagactgtttggaagaacttatgaaaacagctt 296  Q
    |||||| ||||||| |||| ||||| |||||||||||||||||||||    
T  44590143 gacataagttttgtgagaccgtttgaaagaacttatgaaaacagctt 44590097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 1801767 - 1801734
Alignment:
Q  269 tgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||| ||||||||||||||||||||||||||    
T  1801767 tgtttgggagaacttatgaaaacagcttatgaca 1801734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 5745751 - 5745788
Alignment:
Q  265 agactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  5745751 agactgtttagaagaatttatgaaaacagcttatgaca 5745788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 7043668 - 7043733
Alignment:
Q  237 gagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||||  ||| ||||| ||||||| | |||||||| ||||||||||||||| | |||||||||    
T  7043668 gagcttatatacttacataagttttgtgatactgtttgaaagaacttatgaaaataacttatgaca 7043733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 19608575 - 19608636
Alignment:
Q  241 ttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||| ||||||||| ||||| | ||||||||||  ||||||||| || |||||||||||||    
T  19608575 ttatctactgacataggttttatgagactgtttgcgagaacttataaacacagcttatgaca 19608636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 29628672 - 29628733
Alignment:
Q  229 ccttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaa 290  Q
    ||||||| ||||||||| |||| |||| ||||||| |||| || ||||||||||||| ||||    
T  29628672 ccttatttgagcttatctactgtcataagttttgtgagacagtctggaagaacttataaaaa 29628733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 32106766 - 32106803
Alignment:
Q  265 agactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  32106766 agactgtttgtgagaacttatgaaaacagcttatgaca 32106803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 39659447 - 39659512
Alignment:
Q  237 gagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||||| ||||||||| |||| || || |||| ||  |||||||| |||||||||||||||||    
T  39659447 gagcttatctactgacataagtttcgtgaggctgtctgagagaacttacgaaaacagcttatgaca 39659512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 41293121 - 41293166
Alignment:
Q  257 gttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||| ||||| ||||| ||||||||| ||||||||||||||||    
T  41293121 gttttgtgagactatttgggagaacttataaaaacagcttatgaca 41293166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 449986 - 449914
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| |||  |||| ||||| | ||| ||||||| || |||| ||||||||||||||||||    
T  449986 cttatttgagcttatctactagcataagttttatgagattgtttgggaggacttttgaaaacagcttatgaca 449914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 413
Target Start/End: Complemental strand, 12215784 - 12215744
Alignment:
Q  373 tttatgttatcttttgctgtagaaatagtttatacacaagc 413  Q
    ||||| |||||||||| ||||||||||||||||||| ||||    
T  12215784 tttattttatcttttgttgtagaaatagtttatacataagc 12215744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 13325709 - 13325637
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| | ||| ||| ||||| | ||| |||| || ||||||| ||||||||||||||||||    
T  13325709 cttatttgagcttatcaattgatataagttttatgagattgttcgggagaacttttgaaaacagcttatgaca 13325637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 28122133 - 28122105
Alignment:
Q  28 ggtccctaaactattaaaatcaactaaaa 56  Q
    |||||||||||||||||||||||||||||    
T  28122133 ggtccctaaactattaaaatcaactaaaa 28122105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 29430860 - 29430824
Alignment:
Q  266 gactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||| |||||||||||||||||||| |||||||||||    
T  29430860 gactatttggaagaacttatgaaaatagcttatgaca 29430824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 31744437 - 31744365
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| | ||||||| || |||||| ||||| | ||||||||||  ||||||| ||||||||||||| ||||    
T  31744437 cttatttgggcttatctaccgacataagttttctgagactgtttgagagaacttttgaaaacagcttaagaca 31744365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 43910985 - 43911028
Alignment:
Q  312 tttgaaagaacttatgacattgttaataagttgttttcagcttat 356  Q
    ||||| |||||||||||||| ||| ||||||||||||||||||||    
T  43910985 tttgagagaacttatgacat-gttcataagttgttttcagcttat 43911028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 24759 - 24688
Alignment:
Q  231 ttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||| |||| |||| | || |||||||||||| ||||||||||| ||||||||| ||||||||||||||||    
T  24759 ttatttgagcgtatctattggcatatgttttgtgagactgtttgggagaacttatcaaaacagcttatgaca 24688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 287
Target Start/End: Complemental strand, 44172 - 44115
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatga 287  Q
    |||||| |||| || | |||| |||||||||||| ||||||||||| |||||||||||    
T  44172 cttatttgagcgtacctactggcatatgttttgtgagactgtttgggagaacttatga 44115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 20368129 - 20368184
Alignment:
Q  247 actgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||||| ||||||||||||| ||||| |||||||||||||||| |||||||||    
T  20368129 actgacataagttttgtaagactatttgggagaacttatgaaaacaacttatgaca 20368184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 30926623 - 30926586
Alignment:
Q  265 agactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30926623 agactgtttggaagaacttatgaaaacagcttatgaca 30926586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 10645335 - 10645387
Alignment:
Q  249 tgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgac 301  Q
    ||||||| ||||||||||||||||||| |||||||||||||||| ||| ||||    
T  10645335 tgacataagttttgtaagactgtttgggagaacttatgaaaacaacttttgac 10645387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 350 - 413
Target Start/End: Original strand, 29274299 - 29274362
Alignment:
Q  350 agcttatatgaaagcaatttgcatttatgttatcttttgctgtagaaatagtttatacacaagc 413  Q
    ||||||||||||| |||||||  ||||| |||||||||||| ||||||||| ||||||| ||||    
T  29274299 agcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagc 29274362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 848106 - 848056
Alignment:
Q  252 catatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||| ||||||| ||||||||||||||||||||| ||||| ||||||||||    
T  848106 cataagttttgtgagactgtttggaagaacttataaaaactgcttatgaca 848056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 35069543 - 35069593
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaa 280  Q
    |||||| ||||||||| ||||||||| |||||||||||||||| |||||||    
T  35069543 cttatttgagcttatctactgacataagttttgtaagactgttcggaagaa 35069593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 26559200 - 26559241
Alignment:
Q  259 tttgtaagactgtttggaagaacttatgaaaacagcttatga 300  Q
    ||||| |||||||||||||||||||||||||||| |||||||    
T  26559200 tttgtgagactgtttggaagaacttatgaaaacaacttatga 26559241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 33089645 - 33089572
Alignment:
Q  230 cttattagagcttatccactgacatatgt-tttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| |||||||||||| ||||| ||||| |||   ||||||||||||||||||||| ||||    
T  33089645 cttatttgagcttatctactgacatatgtatttgtgagactatttcagagaacttatgaaaacagcttaggaca 33089572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 30536634 - 30536570
Alignment:
Q  238 agcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||||| |||| | || ||||||| ||||||||||| || ||||||||||| |||||||||||    
T  30536634 agcttatctactggcgtaagttttgtgagactgtttgggaggacttatgaaaatagcttatgaca 30536570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 34430853 - 34430782
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||| ||||| ||| ||||||||||| ||||||| | || ||||||||||| |||||||||    
T  34430853 cttatttgagcttatcaactga-ataagttttgtaagattgtttgggataatttatgaaaacaacttatgaca 34430782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 160911 - 160966
Alignment:
Q  247 actgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||| |||| ||||||| ||||| ||||||||||| || |||||||||||||||||    
T  160911 actggcataagttttgttagactatttggaagaacatacgaaaacagcttatgaca 160966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 302
Target Start/End: Complemental strand, 769246 - 769204
Alignment:
Q  260 ttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||| |||||||||||| ||||||||||||||| |||||||||    
T  769246 ttgtgagactgtttggatgaacttatgaaaacatcttatgaca 769204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 24982841 - 24982772
Alignment:
Q  233 attagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| |||||| ||| ||||| ||||||| ||||||||| | ||||| | ||| ||||||||||||||    
T  24982841 attagatcttatctactaacataagttttgtgagactgttttggagaacatttgagaacagcttatgaca 24982772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 31624399 - 31624324
Alignment:
Q  230 cttattagagcttatccactgacata---tgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||||||||  |||||||||   |||||||  ||||||||||| |||| |||||||||||||| ||||||    
T  31624399 cttatttgagcttatatactgacataagctgttttgagagactgtttggtagaatttatgaaaacagctcatgaca 31624324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 2455126 - 2455066
Alignment:
Q  231 ttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaac 291  Q
    ||||| || |||||| ||| ||||| ||||||| ||||||||||| ||||||| |||||||    
T  2455126 ttatttgaacttatctactaacataagttttgtgagactgtttgggagaacttctgaaaac 2455066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 2455336 - 2455300
Alignment:
Q  320 aacttatgacattgttaataagttgttttcagcttat 356  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  2455336 aacttattacattgtttataagttgttttcagcttat 2455300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 302
Target Start/End: Complemental strand, 31624184 - 31624156
Alignment:
Q  274 ggaagaacttatgaaaacagcttatgaca 302  Q
    |||||||||||||||||||||||||||||    
T  31624184 ggaagaacttatgaaaacagcttatgaca 31624156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 353 - 417
Target Start/End: Complemental strand, 31624255 - 31624191
Alignment:
Q  353 ttatatgaaagcaatttgcatttatgttatcttttgctgtagaaatagtttatacacaagcgttt 417  Q
    ||||| |||| ||||||  | |||| |||||||||| | ||||||||| ||||||||||||||||    
T  31624255 ttatacgaaaacaatttaaacttattttatcttttgttatagaaatagcttatacacaagcgttt 31624191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 34404657 - 34404729
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||| ||||| ||||||||| |||||||  || | ||||| |||||||||||||| | |||||||||    
T  34404657 cttatttgagtttatcaactgacataagttttgtgtgagtctttgggagaacttatgaaaatatcttatgaca 34404729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 34910340 - 34910412
Alignment:
Q  230 cttattagagcttatccactgacatatgttttgtaagactgtttggaagaacttatgaaaacagcttatgaca 302  Q
    |||||| ||| ||||| ||||| ||  ||||||  ||| ||||||||||||  ||||||||||||||||||||    
T  34910340 cttatttgagtttatctactgatatcagttttgggagattgtttggaagaaactatgaaaacagcttatgaca 34910412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 57
Target Start/End: Complemental strand, 17304 - 17275
Alignment:
Q  28 ggtccctaaactattaaaatcaactaaaat 57  Q
    ||||||||||||||||||||||||||||||    
T  17304 ggtccctaaactattaaaatcaactaaaat 17275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University