View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16378_low_70 (Length: 301)
Name: NF16378_low_70
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_70 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 291
Target Start/End: Complemental strand, 1454553 - 1454269
Alignment:
| Q |
7 |
cacaataaccctatgcttgatattggctatcttccttatactaagtcgtaacttcatggcaaaacatgagaatatcatcatggtcatactcgtccctctt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1454553 |
cacaataaccctatgcttgatattggctatcttccttatactaagtcgtaacttcatggcaaaacatgagaatatcatcatggtcatactcgtccctctt |
1454454 |
T |
|
| Q |
107 |
tatttatttattcaatttgggctgtgttctgttgcgataaccttccctgttgacaaccgcgtctttgggatcttattcatgcttgtgatatttagtgcag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1454453 |
tatttatttattcaatttgggctgtgttctgttgcgataaccttccctgttgacaaccgcgtctttgggatcttattcatgcttgtgatatttagtgcag |
1454354 |
T |
|
| Q |
207 |
tttcagtcatagaagttagtattttctcatggactgttgctagcatctttttgatcttttgggccatcatgtttccacaggttct |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1454353 |
tttcagtcatagaagttagtattttctcatggactgttgctagcatctttttgatcttttgggccatcatgtttccacagcttct |
1454269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 51 - 262
Target Start/End: Complemental strand, 1456027 - 1455816
Alignment:
| Q |
51 |
gtcgtaacttcatggcaaaacatgagaatatcatcatggtcatactcgtccctctttatttatttattcaatttgggctgtgttctgttgcgataacctt |
150 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| | || | || || | |
|
|
| T |
1456027 |
gtcgtaactttatggcaaaatatgagaatatcatcatggtcatactcgtccctcttgttttctttattcaattaaggcagctttatattagttcaatccc |
1455928 |
T |
|
| Q |
151 |
ccctgttgacaaccgcgtctttgggatcttattcatgcttgtgatatttagtgcagtttcagtcatagaagttagtattttctcatggactgttgctagc |
250 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| ||| || ||| | |||| ||||||||||||||||| || ||||||||||||||| ||||||| |
|
|
| T |
1455927 |
ccctgttgacaacagaatctttgggatcttattcatacttttgctatcaactgcaatttcagtcatagaagttggttttttctcatggactgctgctagc |
1455828 |
T |
|
| Q |
251 |
atctttttgatc |
262 |
Q |
| |
|
||| |||||||| |
|
|
| T |
1455827 |
atcattttgatc |
1455816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 51 - 262
Target Start/End: Original strand, 1567318 - 1567529
Alignment:
| Q |
51 |
gtcgtaacttcatggcaaaacatgagaatatcatcatggtcatactcgtccctctttatttatttattcaatttgggctgtgttctgttgcgataacctt |
150 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| | || | || || | |
|
|
| T |
1567318 |
gtcgtaactttatggcaaaatatgagaatatcatcatggtcatactcgtccctcttgttttctttattcaattaaggcagctttatattagttcaatccc |
1567417 |
T |
|
| Q |
151 |
ccctgttgacaaccgcgtctttgggatcttattcatgcttgtgatatttagtgcagtttcagtcatagaagttagtattttctcatggactgttgctagc |
250 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| ||| || ||| | |||| ||||||||||||||||| || ||||||||||||||| ||||||| |
|
|
| T |
1567418 |
ccctgttgacaacagaatctttgggatcttattcatacttttgctatcaactgcaatttcagtcatagaagttggttttttctcatggactgctgctagc |
1567517 |
T |
|
| Q |
251 |
atctttttgatc |
262 |
Q |
| |
|
||| |||||||| |
|
|
| T |
1567518 |
atcattttgatc |
1567529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 273
Target Start/End: Complemental strand, 1461136 - 1460914
Alignment:
| Q |
51 |
gtcgtaacttcatggcaaaacatgagaatatcatcatggtcatactcgtccctctttatttatttattcaatttgggctgtgttctgttgcgataacctt |
150 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| | || || |
|
|
| T |
1461136 |
gtcgtaactttatggcgaaatatgagaatatcatcatggtcatactcgtccctcttgttttctttattcaattaaggctggcggatattagttcaatgag |
1461037 |
T |
|
| Q |
151 |
ccctgttgacaaccgcgtctttgggatcttattcatgcttgtgatatttagtgcagtttcagtcatagaagttagtattttctcatggactgttgctagc |
250 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| || || ||| | |||| |||||||| |||||||| || ||||||||||||| | ||||||| |
|
|
| T |
1461036 |
ccctgttgacaacagaatctttgggatcttattcataattttgctatcaaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctagc |
1460937 |
T |
|
| Q |
251 |
atctttttgatcttttgggccat |
273 |
Q |
| |
|
||| |||||||| ||| |||||| |
|
|
| T |
1460936 |
atcattttgatcgtttcggccat |
1460914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 273
Target Start/End: Original strand, 1555826 - 1556048
Alignment:
| Q |
51 |
gtcgtaacttcatggcaaaacatgagaatatcatcatggtcatactcgtccctctttatttatttattcaatttgggctgtgttctgttgcgataacctt |
150 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| | || || |
|
|
| T |
1555826 |
gtcgtaactttatggcgaaatatgagaatatcatcatggtcatactcgtccctcttgttttctttattcaattaaggctggcggatattagttcaatgag |
1555925 |
T |
|
| Q |
151 |
ccctgttgacaaccgcgtctttgggatcttattcatgcttgtgatatttagtgcagtttcagtcatagaagttagtattttctcatggactgttgctagc |
250 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| || || ||| | |||| |||||||| |||||||| || ||||||||||||| | ||||||| |
|
|
| T |
1555926 |
ccctgttgacaacagaatctttgggatcttattcataattttgctatcaaatgcaatttcagtcgtagaagttggttttttctcatggaccgctgctagc |
1556025 |
T |
|
| Q |
251 |
atctttttgatcttttgggccat |
273 |
Q |
| |
|
||| |||||||| ||| |||||| |
|
|
| T |
1556026 |
atcattttgatcgtttcggccat |
1556048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 275
Target Start/End: Complemental strand, 1750189 - 1750065
Alignment:
| Q |
151 |
ccctgttgacaaccgcgtctttgggatcttattcatgcttgtgatatttagtgcagtttcagtcatagaagttagtattttctcatggactgttgctagc |
250 |
Q |
| |
|
|||| |||| ||| |||||||||||||||||||| | |||| ||| |||||| |||| || ||||||||||| ||| |||||||||| ||||| | |
|
|
| T |
1750189 |
ccctattgataacagcgtctttgggatcttattcttacttgaactatcaagtgcaacttcaatcgtagaagttagttatttatcatggactgctgctatc |
1750090 |
T |
|
| Q |
251 |
atctttttgatcttttgggccatca |
275 |
Q |
| |
|
||| || ||| ||||||| ||||| |
|
|
| T |
1750089 |
atcgttgcgatattttggggcatca |
1750065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 1754211 - 1754131
Alignment:
| Q |
168 |
tctttgggatcttattcatgcttgtgatatttagtgcagtttcagtcatagaagttagtattttctcatggactgttgcta |
248 |
Q |
| |
|
||||||||||||||||||| |||| ||| |||||| |||||||||| ||||||||| || | ||||||| || ||||| |
|
|
| T |
1754211 |
tctttgggatcttattcatacttggactatcaagtgcaatttcagtcatggaagttagttttgtatcatggattgctgcta |
1754131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University