View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16378_low_72 (Length: 291)
Name: NF16378_low_72
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_72 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 51405273 - 51405001
Alignment:
| Q |
1 |
acatggagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagattacagcaaccttaaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51405273 |
acatggagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagattacaacaaccttaaagg |
51405174 |
T |
|
| Q |
101 |
aaacttcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatgactcaacacgagctcattcattac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
51405173 |
aaacttcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatgactcaacacaagctcattcattac |
51405074 |
T |
|
| Q |
201 |
atgaaatgaatgtcctaatgactccatcgttccatcgatacgctggtgtttatggaatggaaggagtattatc |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
51405073 |
atgaaatgaatgtcctaatgactccatcgttccatctatacgctggtgtttatggaatggaaggagtattatc |
51405001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 236
Target Start/End: Original strand, 29981430 - 29981660
Alignment:
| Q |
6 |
gagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagattacagcaaccttaaaggaaact |
105 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||||||||| || ||||||||||| |||| || | |||||| ||||| |||| |||| || | ||||| |
|
|
| T |
29981430 |
gagtgaaattccaggatgttctgctattctcataccgtacgcaagtgcttctcgatcatcacatcctccaaagaaagctacaacaacattgtaagaaaca |
29981529 |
T |
|
| Q |
106 |
tcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatgactcaacacgagctcattcattacatgaa |
205 |
Q |
| |
|
||||| || || |||||| |||| ||||| || || ||||||| |||||||||||| || ||||| ||||| || | || || |||||||||| ||| |
|
|
| T |
29981530 |
tcactagcatggacttgagttgtccctccaaggccacgatcaaccaaaattccaaccgagcaaggagcatggctaagtacaagtccattcattacgcgaa |
29981629 |
T |
|
| Q |
206 |
atgaatgtcctaatgactccatcgttccatc |
236 |
Q |
| |
|
| || || |||||||| ||||| |||||||| |
|
|
| T |
29981630 |
acgagtgccctaatgattccatagttccatc |
29981660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University