View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_low_73 (Length: 289)

Name: NF16378_low_73
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_low_73
NF16378_low_73
[»] chr6 (17 HSPs)
chr6 (5-222)||(29152400-29152621)
chr6 (5-222)||(34281485-34281687)
chr6 (5-221)||(34278778-34278991)
chr6 (227-274)||(4479825-4479872)
chr6 (158-221)||(29012543-29012606)
chr6 (158-221)||(32745188-32745251)
chr6 (228-274)||(14434467-14434513)
chr6 (159-221)||(25319604-25319666)
chr6 (159-221)||(26149297-26149359)
chr6 (152-222)||(29149027-29149097)
chr6 (5-77)||(29149169-29149241)
chr6 (158-214)||(32961062-32961118)
chr6 (159-214)||(29131014-29131069)
chr6 (158-214)||(29299780-29299836)
chr6 (159-214)||(23223694-23223749)
chr6 (158-221)||(29144998-29145061)
chr6 (167-221)||(29123817-29123871)
[»] scaffold0054 (2 HSPs)
scaffold0054 (158-221)||(40122-40185)
scaffold0054 (158-221)||(33771-33834)
[»] chr4 (2 HSPs)
chr4 (158-221)||(37897610-37897673)
chr4 (158-214)||(37895668-37895724)
[»] chr8 (4 HSPs)
chr8 (228-274)||(32850567-32850613)
chr8 (228-274)||(37178001-37178047)
chr8 (228-274)||(32854862-32854908)
chr8 (228-274)||(37173710-37173756)
[»] chr3 (1 HSPs)
chr3 (228-274)||(39163947-39163993)
[»] chr2 (1 HSPs)
chr2 (228-274)||(30782338-30782384)
[»] scaffold1178 (1 HSPs)
scaffold1178 (228-273)||(2286-2331)
[»] scaffold0134 (1 HSPs)
scaffold0134 (158-214)||(16545-16601)
[»] chr7 (5 HSPs)
chr7 (158-214)||(42446025-42446081)
chr7 (159-202)||(5393745-5393788)
chr7 (159-200)||(5442083-5442124)
chr7 (159-200)||(5451093-5451134)
chr7 (228-268)||(18414278-18414318)
[»] chr5 (2 HSPs)
chr5 (159-205)||(40548984-40549030)
chr5 (159-207)||(32642643-32642691)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 5e-62; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 29152621 - 29152400
Alignment:
Q  5 tcttcatggatttggttacaaccatgttacgaatgactataatgtcatccggcatgtaaaagtttgtatagaagaagacccatcatgcgattacactggt 104  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| | |||| |||||||||||||||||||| | |||||||  || ||| || ||    
T  29152621 tcttcatggatttggttataaccatgttacaaatgactataatgtcattcagcatataaaagtttgtatagaagaaaaaccatcatatgaatactctagt 29152522  T
Q  105 gactttgaagaaattgtatcttattggtttgtagatataaactcagtgccaaaatgggagata----tatagcctaaggagtaactcgtggagagaactt 200  Q
    ||| |  |||||||||||||||| ||||||| |||||| ||  ||||||||||||||||||||    ||||||||||||||| |||||||||||||||||    
T  29152521 gacctcaaagaaattgtatcttactggtttggagatattaatccagtgccaaaatgggagatatatatatagcctaaggagtgactcgtggagagaactt 29152422  T
Q  201 gatgttgacatgccgtcttctg 222  Q
    ||||||||||||||||||||||    
T  29152421 gatgttgacatgccgtcttctg 29152400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 34281485 - 34281687
Alignment:
Q  5 tcttcatggatttggttacaaccatgttacgaatgactataatgtcatccggcatgtaaaagtttgtatagaagaagacccatcatgcgattacactggt 104  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| | || | |||||||||||||| ||||| | |||||||  |||||| |||||    
T  34281485 tcttcatggatttggttataaccatgttacgaatgactataatgtcattcagcttataaaagtttgtataaaagaaaaaccatcatatgattactctggt 34281584  T
Q  105 gactttgaagaaattgtatcttattggtttgtagatataaactcagtgccaaaatgggagatatatagcctaaggagtaactcgtggagagaacttgatg 204  Q
    ||| |  ||||| ||||||||||  ||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34281585 gacgtcaaagaatttgtatcttaccgga---------------cagtgccaaaatgggagatatatagcctaaggagtaactcgtggagagaacttgatg 34281669  T
Q  205 ttgacatgccgtcttctg 222  Q
    ||||||||||||||||||    
T  34281670 ttgacatgccgtcttctg 34281687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 34278991 - 34278778
Alignment:
Q  5 tcttcatggatttggttacaaccatgttacgaatgactataatgtcatccggcatgtaaaagtttgtatagaagaagacccatcatgcgattacactggt 104  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |||| ||  | |  |||||   ||||||   |||    
T  34278991 tcttcatggatttggttataaccatgttacaaatgactataatgtcattcggcatgtaaaagtttttataaaaccaaattcatcaactgattacggaggt 34278892  T
Q  105 gactttgaagaaattgtatcttattggtttgtagatataaactcagtgccaaaatgggagatatatagcctaaggagtaactcgtggagagaacttgatg 204  Q
     ||||  ||||||||||||||||| |||||| |||||| || |||   ||||||||||||||||||||||| |  ||||| |||||||||||||||||||    
T  34278891 aacttcaaagaaattgtatcttatcggtttggagatattaattca---ccaaaatgggagatatatagcctgataagtaattcgtggagagaacttgatg 34278795  T
Q  205 ttgacatgccgtcttct 221  Q
     || |||||||| ||||    
T  34278794 ctgtcatgccgtattct 34278778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 4479872 - 4479825
Alignment:
Q  227 ttgttaaatgataatttgtaattttccatattcctaggttccttaatg 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4479872 ttgttaaatgataatttgtaattttccatattcctaggttccttaatg 4479825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 29012543 - 29012606
Alignment:
Q  158 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttct 221  Q
    ||||||||||||||||||||| ||||||  ||||||||||||| ||||||||||||||| ||||    
T  29012543 atgggagatatatagcctaagaagtaacatgtggagagaactttatgttgacatgccgtattct 29012606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 32745251 - 32745188
Alignment:
Q  158 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttct 221  Q
    ||||||||||||||||||||| |||||||| |||||  |||||||||||||||||||| |||||    
T  32745251 atgggagatatatagcctaagaagtaactcctggaggaaacttgatgttgacatgccgccttct 32745188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 14434467 - 14434513
Alignment:
Q  228 tgttaaatgataatttgtaattttccatattcctaggttccttaatg 274  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  14434467 tgttaaatgataatttgtaattttccatattcctaggttcattaatg 14434513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 25319666 - 25319604
Alignment:
Q  159 tgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttct 221  Q
    |||||||||||||||||||| |||||||| |||||| |||||||| |||| ||||||||||||    
T  25319666 tgggagatatatagcctaagaagtaactcatggagaaaacttgatattgagatgccgtcttct 25319604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 26149359 - 26149297
Alignment:
Q  159 tgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttct 221  Q
    |||||||||||||||||||| |||||||| |||||| |||||||| |||| ||||||||||||    
T  26149359 tgggagatatatagcctaagaagtaactcatggagaaaacttgatattgagatgccgtcttct 26149297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 29149097 - 29149027
Alignment:
Q  152 gccaaaatgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctg 222  Q
    ||||| ||||||||| ||||||||||  |||||||| ||||||||| || |||||||||||||||||||||    
T  29149097 gccaacatgggagatgtatagcctaaaaagtaactcatggagagaaatttatgttgacatgccgtcttctg 29149027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 29149241 - 29149169
Alignment:
Q  5 tcttcatggatttggttacaaccatgttacgaatgactataatgtcatccggcatgtaaaagtttgtatagaa 77  Q
    ||||||||||||||||||  |||||||||  || |||||||||||||| ||||||||||| |||| |||||||    
T  29149241 tcttcatggatttggttatgaccatgttataaacgactataatgtcattcggcatgtaaatgtttctatagaa 29149169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 32961118 - 32961062
Alignment:
Q  158 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgcc 214  Q
    |||||||||||||||| |||| ||||||||||||||  |||||||||||||||||||    
T  32961118 atgggagatatatagcgtaagaagtaactcgtggaggaaacttgatgttgacatgcc 32961062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 29131014 - 29131069
Alignment:
Q  159 tgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgcc 214  Q
    |||||||||||||||  ||  |||||||| ||||||||||||||||||||||||||    
T  29131014 tgggagatatatagctcaaaaagtaactcatggagagaacttgatgttgacatgcc 29131069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 29299780 - 29299836
Alignment:
Q  158 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgcc 214  Q
    ||||||||| |||||||||| |||| ||||||||| ||  |||||||||||||||||    
T  29299780 atgggagatgtatagcctaatgagtgactcgtggaaagtgcttgatgttgacatgcc 29299836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 23223749 - 23223694
Alignment:
Q  159 tgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgcc 214  Q
    |||||||||||||||||||  | ||||||||||||  ||||||| |||||||||||    
T  23223749 tgggagatatatagcctaacaattaactcgtggaggaaacttgacgttgacatgcc 23223694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 29144998 - 29145061
Alignment:
Q  158 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttct 221  Q
    ||||||||||||||| ||||| ||||||| ||||||  |||||||||||  |||||| ||||||    
T  29144998 atgggagatatatagtctaagaagtaacttgtggaggaaacttgatgttagcatgccatcttct 29145061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 29123817 - 29123871
Alignment:
Q  167 atatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttct 221  Q
    |||||||||||| |||||||| |||||   ||||||||||||||||||| |||||    
T  29123817 atatagcctaagaagtaactcttggaggatacttgatgttgacatgccgccttct 29123871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 40185 - 40122
Alignment:
Q  158 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttct 221  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||| ||||||    
T  40185 atgggagatatatagcctaagaagtaactcgtggagaaaacttgatattgacatgccatcttct 40122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 33834 - 33771
Alignment:
Q  158 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttct 221  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||| |||||||||| ||||||    
T  33834 atgggagatatatagcctaagaagtaactcgtggaggaaacttgatattgacatgccatcttct 33771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 37897610 - 37897673
Alignment:
Q  158 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttct 221  Q
    ||||||| |||||| |||||| |||||||||||||||||| |||||||||||||||||||||||    
T  37897610 atgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttct 37897673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 37895668 - 37895724
Alignment:
Q  158 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgcc 214  Q
    ||||||| | ||||||||||| ||||| ||||||||  |||||||||||||||||||    
T  37895668 atgggaggtttatagcctaagaagtaattcgtggaggaaacttgatgttgacatgcc 37895724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 32850613 - 32850567
Alignment:
Q  228 tgttaaatgataatttgtaattttccatattcctaggttccttaatg 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32850613 tgttaaatgataatttgtaattttccatattcctaggttccttaatg 32850567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 37178047 - 37178001
Alignment:
Q  228 tgttaaatgataatttgtaattttccatattcctaggttccttaatg 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  37178047 tgttaaatgataatttgtaattttccatattcctaggttccttaatg 37178001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 32854908 - 32854862
Alignment:
Q  228 tgttaaatgataatttgtaattttccatattcctaggttccttaatg 274  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  32854908 tgttaaatgataatttgaaattttccatattcctaggttccttaatg 32854862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 37173756 - 37173710
Alignment:
Q  228 tgttaaatgataatttgtaattttccatattcctaggttccttaatg 274  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  37173756 tgttaaatgataatttgtaatttttcatattcctaggttccttaatg 37173710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 39163993 - 39163947
Alignment:
Q  228 tgttaaatgataatttgtaattttccatattcctaggttccttaatg 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39163993 tgttaaatgataatttgtaattttccatattcctaggttccttaatg 39163947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 30782384 - 30782338
Alignment:
Q  228 tgttaaatgataatttgtaattttccatattcctaggttccttaatg 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30782384 tgttaaatgataatttgtaattttccatattcctaggttccttaatg 30782338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1178 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 2331 - 2286
Alignment:
Q  228 tgttaaatgataatttgtaattttccatattcctaggttccttaat 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2331 tgttaaatgataatttgtaattttccatattcctaggttccttaat 2286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 16601 - 16545
Alignment:
Q  158 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgcc 214  Q
    ||||||||||||||||||||  ||||||||||||||  ||||||| |||||||||||    
T  16601 atgggagatatatagcctaacaagtaactcgtggaggaaacttgacgttgacatgcc 16545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 42446025 - 42446081
Alignment:
Q  158 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgcc 214  Q
    ||||||||||||||| ||||| |||||| |||||||  |||||||||||||||||||    
T  42446025 atgggagatatatagtctaagaagtaacccgtggaggaaacttgatgttgacatgcc 42446081  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 5393788 - 5393745
Alignment:
Q  159 tgggagatatatagcctaaggagtaactcgtggagagaacttga 202  Q
    |||||||||||||||||| |||||||||| |||||| |||||||    
T  5393788 tgggagatatatagcctacggagtaactcatggagaaaacttga 5393745  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 5442083 - 5442124
Alignment:
Q  159 tgggagatatatagcctaaggagtaactcgtggagagaactt 200  Q
    |||||||||||||||||| | |||||||||||||| ||||||    
T  5442083 tgggagatatatagcctacgaagtaactcgtggagggaactt 5442124  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 5451093 - 5451134
Alignment:
Q  159 tgggagatatatagcctaaggagtaactcgtggagagaactt 200  Q
    |||||||||||||||||| | |||||||||||||| ||||||    
T  5451093 tgggagatatatagcctacgaagtaactcgtggagggaactt 5451134  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 18414278 - 18414318
Alignment:
Q  228 tgttaaatgataatttgtaattttccatattcctaggttcc 268  Q
    |||||||| |||||||| |||||| ||||||||||||||||    
T  18414278 tgttaaattataatttgcaatttttcatattcctaggttcc 18414318  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 40548984 - 40549030
Alignment:
Q  159 tgggagatatatagcctaaggagtaactcgtggagagaacttgatgt 205  Q
    |||||||| ||||||||||| ||||||||||||||  ||||||||||    
T  40548984 tgggagatttatagcctaagaagtaactcgtggaggaaacttgatgt 40549030  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 32642643 - 32642691
Alignment:
Q  159 tgggagatatatagcctaaggagtaactcgtggagagaacttgatgttg 207  Q
    ||||||||||||||  |||| |||||||| |||||| ||||||||||||    
T  32642643 tgggagatatatagtttaagaagtaactcttggagaaaacttgatgttg 32642691  T

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