View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16378_low_76 (Length: 284)

Name: NF16378_low_76
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16378_low_76
NF16378_low_76
[»] chr6 (7 HSPs)
chr6 (19-282)||(29951380-29951642)
chr6 (49-283)||(34328910-34329143)
chr6 (19-283)||(6376782-6377045)
chr6 (46-283)||(17957678-17957914)
chr6 (181-276)||(2503861-2503955)
chr6 (231-275)||(198339-198383)
chr6 (179-283)||(635191-635294)
[»] chr8 (14 HSPs)
chr8 (25-283)||(13817551-13817808)
chr8 (19-271)||(42861218-42861469)
chr8 (19-283)||(5214300-5214563)
chr8 (46-283)||(35101904-35102140)
chr8 (167-283)||(18028793-18028908)
chr8 (167-283)||(36913077-36913192)
chr8 (46-275)||(8449360-8449588)
chr8 (49-283)||(30470147-30470384)
chr8 (161-283)||(26748412-26748533)
chr8 (232-283)||(26631675-26631726)
chr8 (217-283)||(43617724-43617790)
chr8 (178-283)||(4624984-4625088)
chr8 (232-280)||(18210187-18210235)
chr8 (47-144)||(26631473-26631570)
[»] chr3 (15 HSPs)
chr3 (45-283)||(33934579-33934816)
chr3 (45-275)||(49822181-49822401)
chr3 (47-283)||(5844349-5844584)
chr3 (181-283)||(49822410-49822512)
chr3 (19-275)||(51436140-51436395)
chr3 (19-283)||(17469925-17470188)
chr3 (167-283)||(37409933-37410048)
chr3 (46-283)||(25829044-25829280)
chr3 (46-283)||(42597741-42597978)
chr3 (167-283)||(25449939-25450054)
chr3 (49-283)||(41894218-41894450)
chr3 (167-276)||(33751821-33751929)
chr3 (49-283)||(47147783-47148016)
chr3 (179-283)||(25787218-25787321)
chr3 (19-113)||(37409785-37409879)
[»] chr7 (7 HSPs)
chr7 (19-283)||(30629941-30630204)
chr7 (19-280)||(48985396-48985656)
chr7 (41-275)||(22194746-22194970)
chr7 (46-283)||(5813785-5814021)
chr7 (46-283)||(35028148-35028384)
chr7 (167-283)||(25217748-25217863)
chr7 (19-113)||(22733570-22733664)
[»] chr4 (12 HSPs)
chr4 (19-283)||(21654164-21654418)
chr4 (19-280)||(31848100-31848360)
chr4 (19-283)||(10090264-10090527)
chr4 (19-283)||(46913838-46914101)
chr4 (41-283)||(12159253-12159492)
chr4 (46-283)||(2211673-2211909)
chr4 (47-283)||(40596090-40596327)
chr4 (65-283)||(53180831-53181048)
chr4 (49-283)||(47749414-47749647)
chr4 (181-283)||(27141671-27141772)
chr4 (182-283)||(7401688-7401788)
chr4 (233-283)||(35394983-35395033)
[»] chr1 (9 HSPs)
chr1 (47-283)||(27629669-27629904)
chr1 (47-283)||(37419552-37419787)
chr1 (19-140)||(643176-643297)
chr1 (41-283)||(17786748-17786989)
chr1 (192-280)||(643323-643410)
chr1 (179-283)||(31471696-31471799)
chr1 (232-283)||(52930214-52930265)
chr1 (231-283)||(37645949-37646001)
chr1 (179-283)||(45242561-45242664)
[»] chr2 (9 HSPs)
chr2 (27-283)||(39432079-39432335)
chr2 (167-283)||(37246163-37246278)
chr2 (46-283)||(8855505-8855741)
chr2 (46-283)||(9072301-9072537)
chr2 (88-283)||(1987649-1987843)
chr2 (179-283)||(12858400-12858503)
chr2 (179-283)||(30819127-30819230)
chr2 (19-113)||(37246332-37246426)
chr2 (231-283)||(4296163-4296215)
[»] chr5 (5 HSPs)
chr5 (167-283)||(41263939-41264054)
chr5 (46-283)||(4580514-4580750)
chr5 (19-283)||(8175669-8175932)
chr5 (49-283)||(31011411-31011644)
chr5 (232-283)||(25033690-25033741)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 29951380 - 29951642
Alignment:
Q  19 taatgtgccattcaactccttctttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatt 118  Q
    ||||||| ||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||  ||||||| ||| |    
T  29951380 taatgtgtcattcaactccttctttatctccaatggtttgtttaatgtgtgttgaatgggggaatagaagagagagaagatgaatacattcaacaccaat 29951479  T
Q  119 taatcctgccacggatgccacgcggcacttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcaga 218  Q
    ||||||||||||||||||||||| |  |    ||||||| | |||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||| ||    
T  29951480 taatcctgccacggatgccacgcagtgcaagcaaattggcccaaaacgggcgcgtgcatcacacgcgccgacaaggcgcgtgaacggtcagaggctcgga 29951579  T
Q  219 gagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaattct 282  Q
    ||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  29951580 gagagaaacg-gtttttggatagataaggacacgtggcgcgttttaattggttgtccggattct 29951642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 49 - 283
Target Start/End: Complemental strand, 34329143 - 34328910
Alignment:
Q  49 caatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggcactt 148  Q
    ||||||| |||||||  ||||||||||| |||||||||||||||||||| |||||  ||||||| ||| |||| ||||||||| |||||||||||| | |    
T  34329143 caatggtgtgtttaatatgtgttgaatgagggaatagaagagagagaaggtgaatggattcaacaccaattaaccctgccacgcatgccacgcggcgcct 34329044  T
Q  149 cgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagataggga 248  Q
    |||||||||   ||||  ||||| |||| ||||||||||||||||||||||||   |||||| | || ||||||||||||   ||||||| ||||| |||    
T  34329043 cgaaattggctgaaaactggcgcgtgcaacacacgcgccgacagggcgcgtgagaggtcagacggtcggagagagaaacg-cattttggaaagataagga 34328945  T
Q  249 cacgtggcgcgttttaattggttgtccgaattctt 283  Q
    ||| |||||||||||||||||||||||| ||||||    
T  34328944 cacatggcgcgttttaattggttgtccggattctt 34328910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 6376782 - 6377045
Alignment:
Q  19 taatgtgccattcaactccttctttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatt 118  Q
    |||||||||||||||| ||   ||||  ||||||| | ||||||| |||||||||||| ||||| |||||||||||||| |||| | ||||||| | |||    
T  6376782 taatgtgccattcaacaccaagtttgcttccaatgatgtgtttaatgtgtgttgaatgagggaagagaagagagagaaggtgaaccgattcaacacaatt 6376881  T
Q  119 taatcctgccacggatgccacgcggcacttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcaga 218  Q
    ||||||||||| |   | |||| ||| ||  |||||||| | |||| |||||| ||| | |||||||| |||| |||||||||  ||||||| |  | ||    
T  6376882 taatcctgccaggccggacacgtggcgctcagaaattggcccaaaacgggcgcgtgcgttacacgcgcagacaaggcgcgtgacgcgtcagacgtgcgga 6376981  T
Q  219 gagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    ||||| || || ||||||||||||||  ||||||||||||||||||||||| |||||| ||||||    
T  6376982 gagag-aatgactttttggatagataatgacacgtggcgcgttttaattggctgtccggattctt 6377045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 46 - 283
Target Start/End: Original strand, 17957678 - 17957914
Alignment:
Q  46 ctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggca 145  Q
    |||||||||| ||||||| ||||||||||||| |||| |||||||||||||| |||| | ||||||| | ||| || ||||||| |   | |||| |||     
T  17957678 ctccaatggtgtgtttaaagtgtgttgaatggtggaagagaagagagagaaggtgaaccgattcaacacaattgaaccctgccaggccggacacgtggcg 17957777  T
Q  146 cttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatag 245  Q
       || |||||| | |||| |||||| ||| | |||||||| |||| |||||||||  ||||||| |  | |||||||||  || ||||||||||||||     
T  17957778 acgcggaattggcccaaaacgggcgcgtgcgttacacgcgcagacaaggcgcgtgacgcgtcagacgtgcggagagagaat-gactttttggatagataa 17957876  T
Q  246 ggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
     ||||||||||||||||||||||| |||||| ||||||    
T  17957877 tgacacgtggcgcgttttaattggctgtccggattctt 17957914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 276
Target Start/End: Complemental strand, 2503955 - 2503861
Alignment:
Q  181 acgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccg 276  Q
    ||||||||||||||||||||| |   ||||| | | ||||||||||    |||||||||||||| ||||||||||| |||||||||||||||||||    
T  2503955 acgcgccgacagggcgcgtgagcgtgcagag-cgcggagagagaaaatgatttttggatagataaggacacgtggcacgttttaattggttgtccg 2503861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 198383 - 198339
Alignment:
Q  231 tttttggatagatagggacacgtggcgcgttttaattggttgtcc 275  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||    
T  198383 tttttggatagataaggacacgtggcacgttttaattggttgtcc 198339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 635294 - 635191
Alignment:
Q  179 acacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaac-gattttttggatagatagggacacgtggcgcgttttaattggttgtccga 277  Q
    ||||||||||||||||||||||| |   ||||| | | ||||||||||  ||||||||| | ||||| ||||||||||| |||||||||||| ||||||     
T  635294 acacgcgccgacagggcgcgtgagcgtgcagag-cgcggagagagaaaatgattttttgaa-agataaggacacgtggcacgttttaattggctgtccgg 635197  T
Q  278 attctt 283  Q
    ||||||    
T  635196 attctt 635191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 283
Target Start/End: Complemental strand, 13817808 - 13817551
Alignment:
Q  25 gccattcaactccttctttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcc 124  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||  ||||||| ||| |||||||    
T  13817808 gccattcaactccttctttgtctccaatggtttgtttaatgtgtgttgaatgggggaataggagagagagaagatgaatacattcaacaccaattaatcc 13817709  T
Q  125 tgccacggatgccacgcggcacttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagaga 224  Q
    |||||||||||||||||||| |    ||||||| | |||| |||||| |||||||||||||| |||| ||||||||||| |||||||| || ||||||||    
T  13817708 tgccacggatgccacgcggcgcaagcaaattggcccaaaacgggcgcgtgcatcacacgcgctgacaaggcgcgtgaacggtcagagggtcggagagaga 13817609  T
Q  225 aacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    ||||  |||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  13817608 aacg-gtttttggatagataaggacatgtggcgcgttttaattggttgtccgaattctt 13817551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 42861469 - 42861218
Alignment:
Q  19 taatgtgccattcaactccttctttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatt 118  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||  |||||||  || |    
T  42861469 taatgggccattcaactccttctttgtctccaatggtttgtttaatgtgtgttgaatgggggaatagaagagagagaagatgaatacattcaacatcaat 42861370  T
Q  119 taatcctgccacggatgccacgcggcacttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcaga 218  Q
    ||||||||| | |||||||| | ||| |    ||||||| | ||||||||||| || |||||||||||||||| ||||||||||| |||||||   | ||    
T  42861369 taatcctgctatggatgccatgtggcgcaagcaaattggcccaaaatgggcgcgtgtatcacacgcgccgacaaggcgcgtgaacggtcagagatgcgga 42861270  T
Q  219 gagagaaacgattttttggatagatagggacacgtggcgcgttttaattggtt 271  Q
    ||||||||||  |||||||||||||| ||||| ||||||| ||||||||||||    
T  42861269 gagagaaacg-gtttttggatagataaggacaggtggcgcattttaattggtt 42861218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 5214563 - 5214300
Alignment:
Q  19 taatgtgccattcaactccttctttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatt 118  Q
    |||||||||||||||| ||   |||| |||||||| | |||||||  || |||||||| |||||||||||||||||||| |||||  ||||||| ||| |    
T  5214563 taatgtgccattcaacaccaattttgcctccaatgatgtgtttaatatgcgttgaatgagggaatagaagagagagaaggtgaatacattcaacaccaat 5214464  T
Q  119 taatcctgccacggatgccacgcggcacttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcaga 218  Q
    |||  |||||| |  ||||||||||| | | |||||||  | |||| |||||| |||||||||| |||||||| ||||||||| | |||||||| || ||    
T  5214463 taacactgccaggattgccacgcggcgcatggaaattgacctaaaacgggcgcgtgcatcacacacgccgacaaggcgcgtgagcagtcagagggtcgga 5214364  T
Q  219 gagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    |||||||  |  ||||||||||||||  |||||||||||||||||||||||||||||| ||||||    
T  5214363 gagagaattg-ctttttggatagataatgacacgtggcgcgttttaattggttgtccggattctt 5214300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 283
Target Start/End: Complemental strand, 35102140 - 35101904
Alignment:
Q  46 ctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggca 145  Q
    |||||||||| |||| || || | ||||||| ||||| |||||||||||||| |||| | ||||||| | ||| || ||||||| |   | |||| ||||    
T  35102140 ctccaatggtgtgttgaaagtctcttgaatgagggaagagaagagagagaaggtgaaccaattcaacacaattgaaccctgccaggccggacacgtggca 35102041  T
Q  146 cttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatag 245  Q
       |||||||||   ||||  ||||| |||| ||||||||||||||||||||||||   |||||| | || ||||||||||||  |||| ||| |||||     
T  35102040 gcgcgaaattggctgaaaactggcgcgtgcaacacacgcgccgacagggcgcgtgagaggtcagacggtcggagagagaaacgcatttt-ggaaagataa 35101942  T
Q  246 ggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  35101941 ggacacgtggcgcgttttaattggttgtccggattctt 35101904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 167 - 283
Target Start/End: Original strand, 18028793 - 18028908
Alignment:
Q  167 ggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagggacacgtggcgcgttttaat 266  Q
    ||||| |||| ||||||||||||||||||||||||   |||| ||   | ||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  18028793 ggcgcgtgcagcacacgcgccgacagggcgcgtgagtggtcaaagatgcggagagagaaacgactttt-ggatagatagggacacgtggcgcgttttaat 18028891  T
Q  267 tggttgtccgaattctt 283  Q
    |||||||||| ||||||    
T  18028892 tggttgtccggattctt 18028908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 167 - 283
Target Start/End: Complemental strand, 36913192 - 36913077
Alignment:
Q  167 ggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagggacacgtggcgcgttttaat 266  Q
    ||||| |||| |||||| |||||||||||||||||    |||||| | | ||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  36913192 ggcgcgtgcagcacacgtgccgacagggcgcgtgagtgttcagagacgcggagagagaaacgagtttt-ggatagatagggacacgtggcgcgttttaat 36913094  T
Q  267 tggttgtccgaattctt 283  Q
    |||||||||| ||||||    
T  36913093 tggttgtccggattctt 36913077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 275
Target Start/End: Original strand, 8449360 - 8449588
Alignment:
Q  46 ctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggca 145  Q
    |||||||||| |||| || || ||||||||| ||||| |||||||||||||| ||||   ||||||| | ||| || ||||||| |   | |||| ||||    
T  8449360 ctccaatggtgtgttgaaagtctgttgaatgagggaagagaagagagagaaggtgaacaaattcaacacaattgaaccctgccaggccggacacgtggca 8449459  T
Q  146 cttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatag 245  Q
       |||||||||   ||||  ||||| |||| ||||| ||||||||||||||||||   |||||| | || ||||||||||||  |||| ||| |||||     
T  8449460 gcgcgaaattggctgaaaactggcgcgtgcaacacacacgccgacagggcgcgtgagaggtcagacggtcggagagagaaacgcatttt-ggaaagataa 8449558  T
Q  246 ggacacgtggcgcgttttaattggttgtcc 275  Q
    ||||||||||||||||||||||||||||||    
T  8449559 ggacacgtggcgcgttttaattggttgtcc 8449588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 283
Target Start/End: Original strand, 30470147 - 30470384
Alignment:
Q  49 caatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggcactt 148  Q
    ||||||| ||||||| |  |||||||||| |  ||||| |||||||| |||||||  ||||||| | ||| |||  || ||||||||||||||||| |      
T  30470147 caatggtgtgtttaatgcatgttgaatggtgagatagatgagagagaggatgaatgcattcaacacaattgaatattgtcacggatgccacgcggcgcgc 30470246  T
Q  149 cgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctc---agagagagaaacgattttttggatagatag 245  Q
     |  |||| |  |||| |||||| ||||||||||||||||||| |||||||||    ||||| | |    |||||||||||   | ||||||||||||||    
T  30470247 tgctattgcttgaaaacgggcgcgtgcatcacacgcgccgacaaggcgcgtgactgttcagaaggtggagagagagagaaaacgtgttttggatagatag 30470346  T
Q  246 ggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  30470347 ggacacgtggggcgttttaattggttgtccggattctt 30470384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 161 - 283
Target Start/End: Original strand, 26748412 - 26748533
Alignment:
Q  161 aaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcaga-ggctcagagagagaaacgattttttggatagatagggacacgtggcgcg 259  Q
    |||| |||||| ||||||||||||||||||| |||||||||    ||||| |||  ||||||| |||||| |||| |||||||||||||||||||||| |    
T  26748412 aaaacgggcgcgtgcatcacacgcgccgacaaggcgcgtgactgttcagaaggcggagagaga-aaacgagtttt-ggatagatagggacacgtggcgtg 26748509  T
Q  260 ttttaattggttgtccgaattctt 283  Q
    |||||||||||||||| |||||||    
T  26748510 ttttaattggttgtccaaattctt 26748533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 26631675 - 26631726
Alignment:
Q  232 ttttggatagatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  26631675 ttttggatagataggggcacgtggcgcgttttaattggttgtccggattctt 26631726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 43617724 - 43617790
Alignment:
Q  217 gagagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    ||||||||||  | |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||    
T  43617724 gagagagaaaataatttttggatagataaggacacgtggcacgttttaattggttgtccggattctt 43617790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 283
Target Start/End: Original strand, 4624984 - 4625088
Alignment:
Q  178 cacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccga 277  Q
    |||||||||||  ||||||| |||   ||||||| | | ||||||||||||| |||| | |||| || |||||||||||||||||||||||||||||||     
T  4624984 cacacgcgccggtagggcgcatgagtggtcagagacgcggagagagaaacgactttt-gaataggtatggacacgtggcgcgttttaattggttgtccgg 4625082  T
Q  278 attctt 283  Q
    ||||||    
T  4625083 attctt 4625088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 18210187 - 18210235
Alignment:
Q  232 ttttggatagatagggacacgtggcgcgttttaattggttgtccgaatt 280  Q
    ||||||||||||||| |||||||| ||||||| ||||||| ||||||||    
T  18210187 ttttggatagataggaacacgtggtgcgttttgattggttttccgaatt 18210235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 26631473 - 26631570
Alignment:
Q  47 tccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggc 144  Q
    ||||||||| ||||||| |  |||||||||| |  || || |||||||| |||||||  ||||||| | ||| ||| ||| |||||||||||||||||    
T  26631473 tccaatggtgtgtttaatgcatgttgaatggtgagatggatgagagagaggatgaatgcattcaacacaattgaatactgtcacggatgccacgcggc 26631570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 45 - 283
Target Start/End: Original strand, 33934579 - 33934816
Alignment:
Q  45 tctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggc 144  Q
    ||||||||| | ||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||    
T  33934579 tctccaatgatgtgtttaacaagtgttgaatgggggaatagaagagagagaagatgaatccattcaactccatttaatcctgccacgcatgccacgtggc 33934678  T
Q  145 acttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagata 244  Q
     |||| |||||||||||||| |||||| |||| |||||||||||||||||||||||| | |||||||| || ||| ||||||||  ||||||||||||||    
T  33934679 gcttcaaaattggtcaaaaacgggcgcgtgcaacacacgcgccgacagggcgcgtgagcggtcagaggttcggagtgagaaacg-gtttttggatagata 33934777  T
Q  245 gggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
     |||||||||||||||| |||||||||||||||||||||    
T  33934778 aggacacgtggcgcgttctaattggttgtccgaattctt 33934816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 45 - 275
Target Start/End: Original strand, 49822181 - 49822401
Alignment:
Q  45 tctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggc 144  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||||         ||||    
T  49822181 tctccaatggcatgtttaacgtgtgttgaatgggggaaaagaagagagagaagatgaatccattcaacaccattgaatcctgccacg---------cggc 49822271  T
Q  145 acttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagata 244  Q
     |||  | ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  49822272 gcttgaatattggtcaaaaatgg-cgcgtgcatcacacgcgccgacagggcgcgtgaaccgtcagagggtcggagagagaaacgattttttggatagata 49822370  T
Q  245 gggacacgtggcgcgttttaattggttgtcc 275  Q
     ||||||||||||||||||||||||||||||    
T  49822371 aggacacgtggcgcgttttaattggttgtcc 49822401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 47 - 283
Target Start/End: Original strand, 5844349 - 5844584
Alignment:
Q  47 tccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggcac 146  Q
    ||||||||| |||||||  ||||||||||| |||||||||||||||||||| |||||  ||||||| ||| |||| ||||||||| |||||||||||| |    
T  5844349 tccaatggtgtgtttaatatgtgttgaatgagggaatagaagagagagaaggtgaatggattcaacaccaattaaccctgccacgcatgccacgcggcgc 5844448  T
Q  147 ttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagg 246  Q
     ||||||||||   ||||  ||||| |||| ||||||||||||||||||||||||   |||||| | || ||||||||||||   ||||||| ||||| |    
T  5844449 ctcgaaattggctgaaaactggcgcgtgcaacacacgcgccgacagggcgcgtgagaggtcagacggtcggagagagaaacg-cattttggaaagataag 5844547  T
Q  247 gacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    |||||||||||||||||||||||||||||| ||||||    
T  5844548 gacacgtggcgcgttttaattggttgtccggattctt 5844584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 49822410 - 49822512
Alignment:
Q  181 acgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaatt 280  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  49822410 acgcgccgacagggcgcgtgaaccgtcagagggtcggagagagaaacgattttttggatagataaggacacgtggcgcgttttaattggttgtccggatt 49822509  T
Q  281 ctt 283  Q
    |||    
T  49822510 ctt 49822512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 51436395 - 51436140
Alignment:
Q  19 taatgtgccattcaactccttctttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatt 118  Q
    |||||||||||||||| ||   |||| |||||||| | ||||||| |||||||||||| |||||||||||||||||| | |||||  |||||||  || |    
T  51436395 taatgtgccattcaacaccaattttgcctccaatgatgtgtttaatgtgtgttgaatgagggaatagaagagagagagggtgaatacattcaacatcaat 51436296  T
Q  119 taatcctgccacggatgccacgcggcacttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcaga 218  Q
    |||  |||||| |   |||||||||| | | |||||||| | |||| |||||| ||||||||||||||| ||| ||||||||| | |||||||| || ||    
T  51436295 taacactgccaggccagccacgcggcgcatggaaattggcccaaaacgggcgcgtgcatcacacgcgccaacaaggcgcgtgagcagtcagagggtcgga 51436196  T
Q  219 gagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtcc 275  Q
    |||||||  |  ||||||||||||||  ||||||||||||||||||||||| |||||    
T  51436195 gagagaattg-ctttttggatagataatgacacgtggcgcgttttaattggatgtcc 51436140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 17470188 - 17469925
Alignment:
Q  19 taatgtgccattcaactccttctttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatt 118  Q
    ||||| |||||||||| ||   |||| |||||||||| ||||||| |||||||||||| ||||| |||||||||||||| |||| | ||||||| |||||    
T  17470188 taatgagccattcaacaccaattttgcctccaatggtgtgtttaaagtgtgttgaatgagggaagagaagagagagaaggtgaaccgattcaacaccatt 17470089  T
Q  119 taatcctgccacggatgccacgcggcacttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcaga 218  Q
    ||| ||||||| |   | |||| |||    ||||||||| | |||| |||||| ||| | |||||||| |||| ||| ||||  | |||||| |  | ||    
T  17470088 taaccctgccaggccggacacgtggcgacgcgaaattggcccaaaacgggcgcgtgcgttacacgcgcagacaaggcacgtgggctgtcagacgtgcgga 17469989  T
Q  219 gagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    ||||| || |  ||||||||||||||  ||||||||||||||| |||||||||||||| ||||||    
T  17469988 gagag-aatggctttttggatagataatgacacgtggcgcgttataattggttgtccggattctt 17469925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 167 - 283
Target Start/End: Original strand, 37409933 - 37410048
Alignment:
Q  167 ggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagggacacgtggcgcgttttaat 266  Q
    ||||| |||| ||||||||||||||||||||||||    |||||| | | ||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  37409933 ggcgcgtgcagcacacgcgccgacagggcgcgtgagtgttcagagacgcggagagagaaacgagtttt-ggatagatagggacacgtggcgcgttttaat 37410031  T
Q  267 tggttgtccgaattctt 283  Q
    |||||||||| ||||||    
T  37410032 tggttgtccggattctt 37410048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 46 - 283
Target Start/End: Original strand, 25829044 - 25829280
Alignment:
Q  46 ctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggca 145  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||| | ||||||| | ||| || ||||||| |   | |||| |||     
T  25829044 ctccaatggtgtgtttaaagtgtgttgaatgagggaatagaagagagagaaggtgaaccgattcaacacaattgaaccctgccaggccggacacgtggcg 25829143  T
Q  146 cttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatag 245  Q
        |||||||| | |||| |||||| ||| | |||||||| |||| |||||||||  |||||||    | ||||||| || || ||||||||||||||     
T  25829144 acgagaaattggcccaaaacgggcgcgtgcgttacacgcgcagacaaggcgcgtgatgcgtcagacatgcggagagag-aatgactttttggatagataa 25829242  T
Q  246 ggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
     ||||||||||||||||||||||| |||||| ||||||    
T  25829243 tgacacgtggcgcgttttaattggctgtccggattctt 25829280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 46 - 283
Target Start/End: Original strand, 42597741 - 42597978
Alignment:
Q  46 ctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggca 145  Q
    |||||||||| ||||||| ||||||||||||| |||| |||||||||||||| |||| | ||||||| | ||| || ||||||| |   | |||| |||     
T  42597741 ctccaatggtgtgtttaaagtgtgttgaatggtggaagagaagagagagaaggtgaaccgattcaacacaattgaaccctgccaggccggacacgtggcg 42597840  T
Q  146 cttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatag 245  Q
       || |||||| | |||| |||||| ||| | |||||||| |||| |||||||||  ||||||| |  | |||||||||    |||||||||||||||     
T  42597841 acgcggaattggcccaaaacgggcgcgtgcgttacacgcgcagacaaggcgcgtgacgcgtcagacgtgcggagagagaatgacttttttggatagataa 42597940  T
Q  246 ggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
     ||||||||||||||||||||||| |||||| ||||||    
T  42597941 tgacacgtggcgcgttttaattggctgtccggattctt 42597978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 167 - 283
Target Start/End: Original strand, 25449939 - 25450054
Alignment:
Q  167 ggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagggacacgtggcgcgttttaat 266  Q
    ||||| |||| |||| |||||||||||||||||||   ||||||| | | ||||||||||||| |||| |||||||||||||||| ||||||||||||||    
T  25449939 ggcgcgtgcagcacatgcgccgacagggcgcgtgagtggtcagagacgcggagagagaaacgactttt-ggatagatagggacacatggcgcgttttaat 25450037  T
Q  267 tggttgtccgaattctt 283  Q
    |||||||||| ||||||    
T  25450038 tggttgtccggattctt 25450054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 283
Target Start/End: Complemental strand, 41894450 - 41894218
Alignment:
Q  49 caatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgcca--cggatgccacgcggcac 146  Q
    ||||||| ||||||| |||||||||||| ||||| |||||||||||||| |||||| ||| ||| | | |||| ||||||   ||||   |||| ||||     
T  41894450 caatggtgtgtttaaagtgtgttgaatgagggaagagaagagagagaaggtgaatccattaaacacaaattaaccctgccggccgga---cacgtggcaa 41894354  T
Q  147 ttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagg 246  Q
      ||  ||| | ||||||  ||||| ||| | |||||||| |||| |||||||||  ||||||| |  | |||||||||| |||||||||||||||||      
T  41894353 cgcgctatttggcaaaaactggcgcgtgcgttacacgcgcagacaaggcgcgtgacgcgtcagacgtccggagagagaaa-gattttttggatagataat 41894255  T
Q  247 gacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  41894254 gacacgtggcgcgttttaattggctgtccggattctt 41894218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 276
Target Start/End: Complemental strand, 33751929 - 33751821
Alignment:
Q  167 ggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagggacacgtggcgcgttttaat 266  Q
    ||||| |||| |||||| ||||||||||||| |||    |||||||| | ||||||||||||| |||  |||||||||||||||||||||| ||||||||    
T  33751929 ggcgcgtgcaacacacgtgccgacagggcgcatgagtgttcagaggcgcggagagagaaacgagttta-ggatagatagggacacgtggcgtgttttaat 33751831  T
Q  267 tggttgtccg 276  Q
    ||||||||||    
T  33751830 tggttgtccg 33751821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 49 - 283
Target Start/End: Complemental strand, 47148016 - 47147783
Alignment:
Q  49 caatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggcactt 148  Q
    ||||||| ||||||| |||||||||||| ||||| |||||||||||||| |||||| ||| ||| | ||||||  |||||  |   | |||| |||        
T  47148016 caatggtgtgtttaaagtgtgttgaatgagggaagagaagagagagaaggtgaatccattaaacacaatttaactctgcccggccggacacgtggcgacg 47147917  T
Q  149 cgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagataggga 248  Q
    ||| ||| ||  ||||  ||||| ||| | |||||||| |||| |||||||||  ||||||| |  | |||||||||| |||||||||||||||||  ||    
T  47147916 cgagatttgttgaaaactggcgcgtgcgttacacgcgcagacaaggcgcgtgacgcgtcagacgtgcggagagagaaa-gattttttggatagataatga 47147818  T
Q  249 cacgtggcgcgttttaattggttgtccgaattctt 283  Q
    |||||||| |||||||||||  |||||| ||||||    
T  47147817 cacgtggcacgttttaattgactgtccggattctt 47147783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 25787218 - 25787321
Alignment:
Q  179 acacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaac-gattttttggatagatagggacacgtggcgcgttttaattggttgtccga 277  Q
    ||||||||||||||||||||||| |   ||||| | | ||||||||||  ||||||||| | ||||| ||||||||||| |||||||||||| ||||||     
T  25787218 acacgcgccgacagggcgcgtgagcgtgcagag-cgcggagagagaaaatgattttttgaa-agataaggacacgtggcacgttttaattggctgtccgg 25787315  T
Q  278 attctt 283  Q
    ||||||    
T  25787316 attctt 25787321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 37409785 - 37409879
Alignment:
Q  19 taatgtgccattcaactccttctttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaact 113  Q
    |||||||||||||||| || | ||| |||||||||| |||||||| | ||||||||| ||   | ||| |||||||| |||||||  ||||||||    
T  37409785 taatgtgccattcaacaccatttttttctccaatggcatgtttaatgagtgttgaattggaagaaagaggagagagaggatgaatgaattcaact 37409879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 9e-79; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 30629941 - 30630204
Alignment:
Q  19 taatgtgccattcaactccttctttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatt 118  Q
    ||||||| |||||||||| |||||||||||||||||| ||||||| ||||||||||  |||||||||||||||||||||||||||  ||||||| ||| |    
T  30629941 taatgtgtcattcaactcattctttgtctccaatggtttgtttaatgtgtgttgaaccggggaatagaagagagagaagatgaatacattcaacaccaat 30630040  T
Q  119 taatcctgccacggatgccacgcggcacttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcaga 218  Q
    |||||||||||||||||||||||||| |    ||||||| | |||| |||||| ||||||||||||||||||| ||||||||| | ||||||||||| ||    
T  30630041 taatcctgccacggatgccacgcggcgcaagcaaattggcccaaaacgggcgcgtgcatcacacgcgccgacaaggcgcgtgagcggtcagaggctcgga 30630140  T
Q  219 gagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    ||||||||||  |||||||||||||| |||||||||| |||||||||||||||||||| ||||||    
T  30630141 gagagaaacg-gtttttggatagataaggacacgtggtgcgttttaattggttgtccggattctt 30630204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 48985656 - 48985396
Alignment:
Q  19 taatgtgccattcaactccttctttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatt 118  Q
    ||||| ||||||||||||||| ||||||| ||||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||  ||||||| ||| |    
T  48985656 taatgggccattcaactccttttttgtcttcaatggtttgtttaatgtgtgttgaatggaggaaaagaagagagagaagatgaatacattcaacaccaat 48985557  T
Q  119 taatcctgccacggatgccacgcggcacttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcaga 218  Q
    ||||||||| |||||||||||| ||| |    ||||||| | |||| |||||| || |||||||||||||||| ||||||||||| |||||||   | ||    
T  48985556 taatcctgctacggatgccacgtggcgcaagcaaattggcccaaaacgggcgcgtgtatcacacgcgccgacaaggcgcgtgaacggtcagagatgcgga 48985457  T
Q  219 gagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaatt 280  Q
    ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||| ||||||    
T  48985456 gagagaaacg-gtttttggatagataaggacaggtggcgcgttttaattggttgttcgaatt 48985396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 41 - 275
Target Start/End: Complemental strand, 22194970 - 22194746
Alignment:
Q  41 tttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacg 140  Q
    ||||||||||||| | ||||||||  |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||             
T  22194970 tttgtctccaatgatgtgtttaacaagtgttgaatgggggaatagaagagagagaagatgaatccattcgactccatttaatcctgccacgt-------- 22194879  T
Q  141 cggcacttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggata 240  Q
     ||  |||| |||||||||||||| |||||| |||| |||||| ||||| ||||||||||| | |||||||| || ||||||||||||  ||||||||||    
T  22194878 -ggtgcttcaaaattggtcaaaaacgggcgcgtgcaacacacgtgccgatagggcgcgtgagcggtcagaggttcggagagagaaacg-gtttttggata 22194781  T
Q  241 gatagggacacgtggcgcgttttaattggttgtcc 275  Q
    |||| ||||||||||||||||||||||||||||||    
T  22194780 gataaggacacgtggcgcgttttaattggttgtcc 22194746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 283
Target Start/End: Complemental strand, 5814021 - 5813785
Alignment:
Q  46 ctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggca 145  Q
    |||||||||| |||| || || ||||||||| ||||| |||||||||||||| |||| | ||||||| | ||| || ||||||| |   | |||| ||||    
T  5814021 ctccaatggtgtgttgaaagtctgttgaatgagggaagagaagagagagaaggtgaaccaattcaacacaattgaaccctgccaggccggacacgtggca 5813922  T
Q  146 cttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatag 245  Q
       |||||||||   ||||  ||||| |||| ||||||||||||||||||| ||||   |||||| | || ||||||||||||  |||| ||| |||||     
T  5813921 gcgcgaaattggctgaaaactggcgcgtgcaacacacgcgccgacagggcgtgtgagatgtcagacggtcggagagagaaacgcatttt-ggaaagataa 5813823  T
Q  246 ggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  5813822 ggacacgtggcgcgttttaattggttgtccggattctt 5813785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 283
Target Start/End: Original strand, 35028148 - 35028384
Alignment:
Q  46 ctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggca 145  Q
    |||||||||| |||| || || ||||||||| ||||| |||||||||||||| |||| | ||||||| | ||| || ||||||| |   | |||| ||||    
T  35028148 ctccaatggtgtgttgaaagtctgttgaatgagggaagagaagagagagaaggtgaaccaattcaacacaattgaaccctgccaggccggacacgtggca 35028247  T
Q  146 cttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatag 245  Q
       |||||||||   ||||  ||||| |||| ||||||||||||||||||||||||   |||||| | || ||||||||||| |  ||||||| | |||     
T  35028248 gcgcgaaattggctgaaaactggcgcgtgcaacacacgcgccgacagggcgcgtgagaggtcagacggtcggagagagaaac-acattttggaaatataa 35028346  T
Q  246 ggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  35028347 ggacacgtggcgcgttttaattggttgtccggattctt 35028384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 167 - 283
Target Start/End: Original strand, 25217748 - 25217863
Alignment:
Q  167 ggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcaga-ggctcagagagagaaacgattttttggatagatagggacacgtggcgcgttttaa 265  Q
    ||||| ||||||||||||||||||| |||||||||    ||||| |||  ||||||| |||||| |||| ||||||||||||||||||||||||||||||    
T  25217748 ggcgcgtgcatcacacgcgccgacaaggcgcgtgactgttcagaaggcggagagaga-aaacgagtttt-ggatagatagggacacgtggcgcgttttaa 25217845  T
Q  266 ttggttgtccgaattctt 283  Q
    ||||||||||| ||||||    
T  25217846 ttggttgtccggattctt 25217863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 22733570 - 22733664
Alignment:
Q  19 taatgtgccattcaactccttctttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaact 113  Q
    |||||||||||||||| || | ||| |||||||||| |||||||| | ||||||||| ||   | ||| |||||||| |||||||  ||||||||    
T  22733570 taatgtgccattcaacaccatttttctctccaatggcatgtttaatgagtgttgaattggaagaaagaggagagagaggatgaatggattcaact 22733664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 8e-70; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 21654164 - 21654418
Alignment:
Q  19 taatgtgccattcaactccttctttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatt 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||  ||||||| ||| |    
T  21654164 taatgtgccattcaactccttctttgtctccaatggtttgtttaatgtgtgttgaatgggggaatagaagagagagaagatgaatacattcaacaccaat 21654263  T
Q  119 taatcctgccacg-gatgccacgcggcacttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcag 217  Q
    ||||||||||||| | || || ||         ||||||| | |||| |||||| ||||||||||||||||||| ||||||||| | ||||||||||| |    
T  21654264 taatcctgccacgcggtg-caagc---------aaattggcccaaaacgggcgcgtgcatcacacgcgccgacaaggcgcgtgagcggtcagaggctcgg 21654353  T
Q  218 agagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    |||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  21654354 agagagaaacg-gtttttggatagataaggacacgtggcgcgttttaattggttgtccggattctt 21654418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 31848100 - 31848360
Alignment:
Q  19 taatgtgccattcaactccttctttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatt 118  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||  ||||||| ||| |    
T  31848100 taatgggccattcaactccttttttgtctccaatggtttgtttaatgtgtgttgaatgggggaaaagaagagagagaagatgaatacattcaacaccaat 31848199  T
Q  119 taatcctgccacggatgccacgcggcacttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcaga 218  Q
    ||||||||| |||||||||||| ||| |    ||||||| | |||| || ||| || |||||||||||||||| |||| |||||| |||||||   |  |    
T  31848200 taatcctgctacggatgccacgtggcgcaagcaaattggcccaaaacggacgcgtgtatcacacgcgccgacaaggcgtgtgaacggtcagagatgcgaa 31848299  T
Q  219 gagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaatt 280  Q
    ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  31848300 gagagaaacg-gtttttggatagataaggacaggtggcgcgttttaattggttgtccgaatt 31848360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 10090527 - 10090264
Alignment:
Q  19 taatgtgccattcaactccttctttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatt 118  Q
    ||||||||||||||||    | |||||||||||| |||||||||| |  |||||||| ||||||||||||||||||| |||||||  ||||||| | |||    
T  10090527 taatgtgccattcaacatgatttttgtctccaatcgtatgtttaatggctgttgaattggggaatagaagagagagaggatgaatgcattcaacacaatt 10090428  T
Q  119 taatcctgccacggatgccacgcggcacttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcaga 218  Q
     ||| ||| || |||||||||||||| |   |  |||| |  ||||||||||| |||||||||||||| ||||||||||||||    ||||| |  | ||    
T  10090427 gaatactgtcatggatgccacgcggcgcactgctattgcttgaaaatgggcgcgtgcatcacacgcgctgacagggcgcgtgactgttcagaag-gcgga 10090329  T
Q  219 gagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    ||||||||     ||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  10090328 gagagaaaaagcgttttgaatagatagggacacgtggcgcgttttaattggttgtccggattctt 10090264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 46913838 - 46914101
Alignment:
Q  19 taatgtgccattcaactccttctttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatt 118  Q
    ||||| |||||||||| ||   |||| |||||||||| ||||||| |||||||||||| ||||| ||||||||| |||| |||| | ||||||| |||||    
T  46913838 taatgagccattcaacaccaattttgcctccaatggtgtgtttaaagtgtgttgaatgagggaagagaagagagggaaggtgaaccgattcaacaccatt 46913937  T
Q  119 taatcctgccacggatgccacgcggcacttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcaga 218  Q
    |||  |||||| |   | |||| |||    ||||||||| | |||| |||||| ||| | |||||||| |||| ||||||||  | |||||| |  | ||    
T  46913938 taactctgccaggctggacacgtggcgacgcgaaattggcccaaaacgggcgcgtgcgttacacgcgcagacaaggcgcgtgggctgtcagacgtgcgga 46914037  T
Q  219 gagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    |||||||  | |||||||||||||||  |||||||||||||||||||||||||||||| ||||||    
T  46914038 gagagaatgg-ttttttggatagataatgacacgtggcgcgttttaattggttgtccggattctt 46914101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 283
Target Start/End: Complemental strand, 12159492 - 12159253
Alignment:
Q  41 tttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacg 140  Q
    ||||||| ||||||||||||||| |  |||||||| ||||||||||||||||||| |||||||  ||||||| | ||| |||  || | |  ||||||||    
T  12159492 tttgtcttcaatggtatgtttaatggctgttgaattggggaatagaagagagagaggatgaatgcattcaacacaattgaatattgtctc--atgccacg 12159395  T
Q  141 cggcacttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggata 240  Q
    ||||||   |  |||| |  |||| |||||  ||||||||||| |||||||||||| ||||    ||||| |  ||||||||||||     |||||||||    
T  12159394 cggcacgctgctattgcttgaaaacgggcgtgtgcatcacacgtgccgacagggcgtgtgactgttcagaagg-cagagagagaaaacgcgttttggata 12159296  T
Q  241 gatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    ||||||||||||||| |||||||||||||||||||| ||||||    
T  12159295 gatagggacacgtggtgcgttttaattggttgtccggattctt 12159253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 46 - 283
Target Start/End: Original strand, 2211673 - 2211909
Alignment:
Q  46 ctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggca 145  Q
    |||||||||| |||| || |  ||||||||| ||||| |||||||||||||| |||| | ||||||| | ||| || | ||||  | | | |||| ||||    
T  2211673 ctccaatggtgtgttgaaaggctgttgaatgagggaagagaagagagagaaggtgaaccaattcaacacaattgaaccatgccgggcaggacacgtggca 2211772  T
Q  146 cttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatag 245  Q
       |||||||||   ||||  ||||| || | ||||||||||||||||||||||||   |||||| | || ||||||||||||  |||| ||| |||||     
T  2211773 gcgcgaaattggctgaaaactggcgcgtggaacacacgcgccgacagggcgcgtgagaggtcagacggtcggagagagaaacgcatttt-ggaaagataa 2211871  T
Q  246 ggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  2211872 ggacacgtgtcgcgttttaattggttgtccggattctt 2211909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 47 - 283
Target Start/End: Original strand, 40596090 - 40596327
Alignment:
Q  47 tccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggcac 146  Q
    ||||||||| ||||||| |  |||||||||| |  || || |||||||| |||||||  ||||||| | ||| ||| ||| |||||||||||| |||| |    
T  40596090 tccaatggtgtgtttaatgcatgttgaatggtgagatggatgagagagaggatgaatgcattcaacacaattgaatactgtcacggatgccacacggcgc 40596189  T
Q  147 ttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctc-agagagagaaacgattttttggatagatag 245  Q
       |  |||| |  |||| |||||| |||||||||||||||||||||||||||||    ||||| | |  |||||||||||  |  ||||||||||||||    
T  40596190 gctgctattgcttgaaaacgggcgcgtgcatcacacgcgccgacagggcgcgtgactgttcagaaggtggagagagagaaaacacgttttggatagatag 40596289  T
Q  246 ggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    |||||||||| ||||||||||| ||||| || ||||||    
T  40596290 ggacacgtggggcgttttaatttgttgttcggattctt 40596327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 283
Target Start/End: Original strand, 53180831 - 53181048
Alignment:
Q  65 gtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggcacttcgaaattggtcaaaaa 164  Q
    |||||||||||| ||||| |||||||||||||| |||| | ||||||| | |||||| ||||||| |   | |||| |||    || |||||| | ||||    
T  53180831 gtgtgttgaatgagggaagagaagagagagaaggtgaaccgattcaacacaatttaaccctgccaggccggacacgtggcgacgcggaattggcccaaaa 53180930  T
Q  165 tgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagggacacgtggcgcgtttta 264  Q
     |||||| ||| | |||||||| |||| |||||||||  ||||||| |  | |||||||||  | |||| ||||||||||  ||||||||||||||||||    
T  53180931 cgggcgcgtgcgttacacgcgcagacaaggcgcgtgatgcgtcagacgtgcggagagagaatggctttt-tggatagataatgacacgtggcgcgtttta 53181029  T
Q  265 attggttgtccgaattctt 283  Q
    ||||| |||||| ||||||    
T  53181030 attggctgtccggattctt 53181048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 49 - 283
Target Start/End: Original strand, 47749414 - 47749647
Alignment:
Q  49 caatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggcactt 148  Q
    ||||||| ||||||| |  |||||||||| |  || || |||||||| |||||||  ||||||| | ||| |||  || ||||||||||||||||| |      
T  47749414 caatggtgtgtttaatgcatgttgaatggtgagatggatgagagagaggatgaatgcattcaacacaattgaatgatgtcacggatgccacgcggcgcgc 47749513  T
Q  149 cgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagataggga 248  Q
     |  |||| |  |||| |||| | ||||||||||||||||| | |||||||||    ||||| |  | ||||||||||  |  |||||||||||||||||    
T  47749514 tgctattgcttgaaaacgggcacgtgcatcacacgcgccgataaggcgcgtgactgttcagaagg-cggagagagaaaacacgttttggatagataggga 47749612  T
Q  249 cacgtggcgcgttttaattggttgtccgaattctt 283  Q
    ||||||||| |||||||||||||||||| ||||||    
T  47749613 cacgtggcgtgttttaattggttgtccggattctt 47749647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 27141671 - 27141772
Alignment:
Q  181 acgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaatt 280  Q
    ||||||||||||||||||||| |   ||||| | | ||||||||||    |||||||||||||| ||||||||||| ||||||||||||||||| | |||    
T  27141671 acgcgccgacagggcgcgtgagcgtgcagag-cgcggagagagaaaatgatttttggatagataaggacacgtggcacgttttaattggttgtcaggatt 27141769  T
Q  281 ctt 283  Q
    |||    
T  27141770 ctt 27141772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 283
Target Start/End: Complemental strand, 7401788 - 7401688
Alignment:
Q  182 cgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaattc 281  Q
    |||||||||||||||||||| |   ||||| | | ||||||||||    |||||||||||||| ||||| ||||| ||||||||||||||||| | ||||    
T  7401788 cgcgccgacagggcgcgtgagcgtgcagag-cgcggagagagaaaatgatttttggatagataaggacatgtggcacgttttaattggttgtcaggattc 7401690  T
Q  282 tt 283  Q
    ||    
T  7401689 tt 7401688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 35395033 - 35394983
Alignment:
Q  233 tttggatagatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    |||||||||||| |||||||||  ||||||| |||||||||||| ||||||    
T  35395033 tttggatagataaggacacgtgctgcgttttgattggttgtccggattctt 35394983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 47 - 283
Target Start/End: Original strand, 27629669 - 27629904
Alignment:
Q  47 tccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggcac 146  Q
    ||||||||| |||||||  ||||||||||| |||||||||||||||||||| |||||  ||||||| ||| |||| ||||||||| |||||||||||| |    
T  27629669 tccaatggtgtgtttaatatgtgttgaatgagggaatagaagagagagaaggtgaatggattcaacaccaattaaccctgccacgcatgccacgcggcgc 27629768  T
Q  147 ttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagg 246  Q
     ||||||||||   ||||  ||||| |||| ||||||||||||||||||||||||   |||||| | || ||||||||||||   ||||||| ||||| |    
T  27629769 ctcgaaattggctgaaaactggcgcgtgcaacacacgcgccgacagggcgcgtgagaggtcagacggtcggagagagaaacg-cattttggaaagataag 27629867  T
Q  247 gacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    |||||||||||||||||||||||||||||| ||||||    
T  27629868 gacacgtggcgcgttttaattggttgtccggattctt 27629904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 47 - 283
Target Start/End: Original strand, 37419552 - 37419787
Alignment:
Q  47 tccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggcac 146  Q
    ||||||||| |||||||  ||||||||||| |||||||||||||||||||| |||||  ||||||| ||| |||| ||||||||| |||||||||||| |    
T  37419552 tccaatggtgtgtttaatatgtgttgaatgagggaatagaagagagagaaggtgaatggattcaacaccaattaaccctgccacgcatgccacgcggcgc 37419651  T
Q  147 ttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagg 246  Q
     ||||||||||   ||||  ||||| |||| ||||||||||||||||||||||||   |||||| | || ||||||||||||   ||||||| ||||| |    
T  37419652 ctcgaaattggctgaaaactggcgcgtgcaacacacgcgccgacagggcgcgtgagaggtcagacggtcggagagagaaacg-cattttggaaagataag 37419750  T
Q  247 gacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    |||||||||||||||||||||||||||||| ||||||    
T  37419751 gacacgtggcgcgttttaattggttgtccggattctt 37419787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 643176 - 643297
Alignment:
Q  19 taatgtgccattcaactccttctttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatt 118  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||||| | |||||||||||||||| ||||||||||||||||||||  |||||||  || |    
T  643176 taatgggccattcaactccttttttgtctccaatggtttgtttaatgcgtgttgaatgggggaaaagaagagagagaagatgaatacattcaacaacaat 643275  T
Q  119 taatcctgccacggatgccacg 140  Q
    ||||||||| |||||| |||||    
T  643276 taatcctgctacggataccacg 643297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 41 - 283
Target Start/End: Complemental strand, 17786989 - 17786748
Alignment:
Q  41 tttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacg 140  Q
    ||||||||||||||||||||||| |  |||||||| |||||||||| |||||||| || |||   ||||||| | |||||||  || |||||||||||||    
T  17786989 tttgtctccaatggtatgtttaatggctgttgaattggggaatagatgagagagaggacgaacgcattcaacacaatttaatattgtcacggatgccacg 17786890  T
Q  141 cggcacttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggata 240  Q
    ||||     |  |||| |  |||| ||| || |||||||||||||||||||||||||||||    ||||| |  | ||||||||||     |||||||||    
T  17786889 cggcgagctgctattgtttgaaaacgggtgcgtgcatcacacgcgccgacagggcgcgtgactgttcagaagg-cggagagagaaaatgcgttttggata 17786791  T
Q  241 gatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  17786790 gatagggacacgtggcgcgttttaattggttgtgctaattctt 17786748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 643323 - 643410
Alignment:
Q  192 gggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaatt 280  Q
    |||||||||||| |||||||   | |||||||||||| |||| |||||||||| ||||| |||||||||||||||||||||||||||||    
T  643323 gggcgcgtgaacggtcagagatgcggagagagaaacggtttt-tggatagataaggacatgtggcgcgttttaattggttgtccgaatt 643410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 31471799 - 31471696
Alignment:
Q  179 acacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaa 278  Q
    |||||||| |||| |||||||||  ||||||| |  | |||||||||| |||||||||||||||||  |||||||||| |||||||||||| |||||| |    
T  31471799 acacgcgcagacaaggcgcgtgacgcgtcagacgtgcggagagagaaa-gattttttggatagataatgacacgtggcacgttttaattggctgtccgga 31471701  T
Q  279 ttctt 283  Q
    |||||    
T  31471700 ttctt 31471696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 52930214 - 52930265
Alignment:
Q  232 ttttggatagatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  52930214 ttttggatagatagggacacgtgacgcgttttaattggttgttcgaattctt 52930265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 37645949 - 37646001
Alignment:
Q  231 tttttggatagatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||| ||||||    
T  37645949 tttttggatagataaggacacgtgacacgttttaattggttgtccggattctt 37646001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 45242664 - 45242561
Alignment:
Q  179 acacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaac-gattttttggatagatagggacacgtggcgcgttttaattggttgtccga 277  Q
    ||||||||||||||||||||||| |   ||||| | | ||||||||||  ||||||||| | ||||| ||||||||||| |||||||||||| ||||||     
T  45242664 acacgcgccgacagggcgcgtgagcgtgcagag-cgcggagagagaaaatgattttttgaa-agataaggacacgtggcacgttttaattggctgtccgg 45242567  T
Q  278 attctt 283  Q
    ||||||    
T  45242566 attctt 45242561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 27 - 283
Target Start/End: Original strand, 39432079 - 39432335
Alignment:
Q  27 cattcaactccttctttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaa--gatgaatctattcaactccatttaatcc 124  Q
    |||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||   |||||||  ||||||| |||||| ||||    
T  39432079 cattcaactccttctttgtctccaatggtatgtttaatagctgttgaatgggggaatagaagagagagagaggatgaatacattcaacaccatttcatcc 39432178  T
Q  125 tgccacggatgccacgcggcacttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagaga 224  Q
    |||||||||||||||||||| |    ||||||| | ||||  ||||| |||||||||||| | |||| ||||||||    ||||||||| | ||||||||    
T  39432179 tgccacggatgccacgcggcgcaagcaaattggcccaaaacaggcgcgtgcatcacacgcacagacatggcgcgtggctggtcagaggcgcggagagaga 39432278  T
Q  225 aacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    |||||  ||||||||||||| ||||||||||| | |||||||||||||| || ||||||    
T  39432279 aacga-gttttggatagata-ggacacgtggcacattttaattggttgttcggattctt 39432335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 167 - 283
Target Start/End: Complemental strand, 37246278 - 37246163
Alignment:
Q  167 ggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagggacacgtggcgcgttttaat 266  Q
    ||||| |||| ||||||||||||||||||||||||    |||||| | | ||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  37246278 ggcgcgtgcagcacacgcgccgacagggcgcgtgagtgttcagagacgcggagagagaaacgagtttt-ggatagatagggacacgtggcgcgttttaat 37246180  T
Q  267 tggttgtccgaattctt 283  Q
    |||||||||| ||||||    
T  37246179 tggttgtccggattctt 37246163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 46 - 283
Target Start/End: Complemental strand, 8855741 - 8855505
Alignment:
Q  46 ctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggca 145  Q
    |||||||||| |||| || || ||||||||| ||||| |||||||||||||| |||| | ||||||| | ||| || ||||||| |   | |||| ||||    
T  8855741 ctccaatggtgtgttgaaagtctgttgaatgagggaagagaagagagagaaggtgaaccaattcaacacaattgaaccctgccaggccggacacgtggca 8855642  T
Q  146 cttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatag 245  Q
       |||||||||   ||||  ||||| |||| ||||||||||||||||||||||||   |||||| | || ||||||||||||  |||| ||| |||||     
T  8855641 tcgcgaaattggctgaaaactggcgcgtgcaacacacgcgccgacagggcgcgtgagaggtcagacggtcggagagagaaacgcatttt-ggaaagataa 8855543  T
Q  246 ggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    |||||| ||||||||||||||||||||| || ||||||    
T  8855542 ggacacatggcgcgttttaattggttgttcggattctt 8855505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 283
Target Start/End: Original strand, 9072301 - 9072537
Alignment:
Q  46 ctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggca 145  Q
    |||||||||| ||||||| ||||||||||||| |||| |||||||||||||| |||| | ||||||| | ||| || ||||||| |     |||| |||     
T  9072301 ctccaatggtgtgtttaaagtgtgttgaatggtggaagagaagagagagaaggtgaaccgattcaacacaattgaaccctgccaggccgaacacgtggcg 9072400  T
Q  146 cttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatag 245  Q
       || |||||| | |||| |||||| ||| | |||||||| |||| |||||||||  ||||||| |  | ||||||| || || ||||||||||||||     
T  9072401 acgcggaattggcccaaaacgggcgcgtgcgttacacgcgcagacaaggcgcgtgacgcgtcagacgtgcggagagag-aatgactttttggatagataa 9072499  T
Q  246 ggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
     |||||||||||| |||||||||| |||| | ||||||    
T  9072500 tgacacgtggcgcattttaattggctgtctggattctt 9072537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 283
Target Start/End: Complemental strand, 1987843 - 1987649
Alignment:
Q  88 gagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggcacttcgaaattggtcaaaaatgggcgcatgcatcacacgcgcc 187  Q
    |||||||| |||||||  ||||||| | ||| ||||||| | ||| ||||||||||| |   | ||||| |  |||| |||||| |||||||||||||||    
T  1987843 gagagagaggatgaatgcattcaacacaattgaatcctgtcccggttgccacgcggcgcgctgcaattgcttgaaaacgggcgcgtgcatcacacgcgcc 1987744  T
Q  188 gacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    |||| || ||||||    ||||| |  | ||||||||||  |  ||||||||||| ||||||||||  ||||||||||||||||||||| ||||||    
T  1987743 gacaaggtgcgtgactgttcagaagg-cggagagagaaaacaagttttggatagacagggacacgtaacgcgttttaattggttgtccggattctt 1987649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 12858503 - 12858400
Alignment:
Q  179 acacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaac-gattttttggatagatagggacacgtggcgcgttttaattggttgtccga 277  Q
    ||||||||||||||||||||||| |   ||||| | | ||||||||||  ||||||||| | ||||| ||||||||||| |||||||||||| ||||||     
T  12858503 acacgcgccgacagggcgcgtgagcgtgcagag-cgcggagagagaaaatgattttttgaa-agataaggacacgtggcacgttttaattggctgtccgg 12858406  T
Q  278 attctt 283  Q
    ||||||    
T  12858405 attctt 12858400  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 30819127 - 30819230
Alignment:
Q  179 acacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaac-gattttttggatagatagggacacgtggcgcgttttaattggttgtccga 277  Q
    ||||||||||||||||||||||| |   ||||| | | ||||||||||  ||||||||| | ||||| ||||||||||| |||||||||||| ||||||     
T  30819127 acacgcgccgacagggcgcgtgagcgtgcagag-cgcggagagagaaaatgattttttgaa-agataaggacacgtggcacgttttaattggctgtccgg 30819224  T
Q  278 attctt 283  Q
    ||||||    
T  30819225 attctt 30819230  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 37246426 - 37246332
Alignment:
Q  19 taatgtgccattcaactccttctttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaact 113  Q
    |||||||||||||||| || | ||| |||||||||| |||||||| | ||||||||| ||   | ||| |||||||| |||||||  ||||||||    
T  37246426 taatgtgccattcaacaccatttttttctccaatggcatgtttaatgagtgttgaattggaagaaagaggagagagaggatgaatggattcaact 37246332  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 4296163 - 4296215
Alignment:
Q  231 tttttggatagatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    |||||||||| ||| ||||||||| | |||||||||||||||| || ||||||    
T  4296163 tttttggataaataaggacacgtgacacgttttaattggttgttcggattctt 4296215  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 167 - 283
Target Start/End: Complemental strand, 41264054 - 41263939
Alignment:
Q  167 ggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatagggacacgtggcgcgttttaat 266  Q
    ||||| |||| ||||||||||||||||||||||||   ||||||| | | ||||||||||||| |||| ||||| |||||||||||||||||||||||||    
T  41264054 ggcgcgtgcagcacacgcgccgacagggcgcgtgagtggtcagagacgcggagagagaaacgactttt-ggatatatagggacacgtggcgcgttttaat 41263956  T
Q  267 tggttgtccgaattctt 283  Q
    |||||||||| ||||||    
T  41263955 tggttgtccggattctt 41263939  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 46 - 283
Target Start/End: Complemental strand, 4580750 - 4580514
Alignment:
Q  46 ctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggca 145  Q
    |||||||||| ||||||| ||||||||||||| |||| |||||||||||||| |||| | ||||||| | ||| || ||||||| |   | |||  |||     
T  4580750 ctccaatggtgtgtttaaagtgtgttgaatggtggaagagaagagagagaaggtgaaccgattcaacacaattgaaccctgccaggccggacacatggcg 4580651  T
Q  146 cttcgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagatag 245  Q
     | || |||||| | |||| |||||| ||| | |||||||| |||| |||||||||  ||||||| |  | |||||||||  || ||||||||||||||     
T  4580650 atgcggaattggcccaaaacgggcgcgtgcgttacacgcgcagacaaggcgcgtgacgcgtcagacgtgcggagagagaat-gactttttggatagataa 4580552  T
Q  246 ggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
     ||||||||||||||||||||||| |||||| ||||||    
T  4580551 tgacacgtggcgcgttttaattggctgtccggattctt 4580514  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 8175669 - 8175932
Alignment:
Q  19 taatgtgccattcaactccttctttgtctccaatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatt 118  Q
    |||||||||||||||| || | ||| |||||||||| |||||||| | ||||||||| ||   | ||| ||||||||||||||||  ||||||||   ||    
T  8175669 taatgtgccattcaacaccatttttctctccaatggcatgtttaatgagtgttgaattggaagaaagaggagagagaagatgaatggattcaactgtgtt 8175768  T
Q  119 taatcctgccacggatgccacgcggcacttcgaaattgg-tcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcag 217  Q
     ||  | | |  | |||||||||||| |   | |||||| | ||| |||| ||| |||| |||| |||||||||||||||||||    |||||| | | |    
T  8175769 gaaagcagtccggaatgccacgcggcgcgctgcaattggctgaaagatgg-cgcgtgcagcacatgcgccgacagggcgcgtgagtgttcagagacgcgg 8175867  T
Q  218 agagagaaacgattttttggatagatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    |||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||    
T  8175868 agagagaaacgagtttt-ggatagatggggacacgtggcgcgttttaattggttgtccggattctt 8175932  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 283
Target Start/End: Original strand, 31011411 - 31011644
Alignment:
Q  49 caatggtatgtttaacgtgtgttgaatgggggaatagaagagagagaagatgaatctattcaactccatttaatcctgccacggatgccacgcggcactt 148  Q
    ||||||| ||||| | |||||||||||| ||||| |||||||||||||| |||||| ||| ||| | ||||||  |||||  |   | |||| |||        
T  31011411 caatggtgtgttttatgtgtgttgaatgagggaagagaagagagagaaggtgaatccattaaacacaatttaaatctgcccggccggacacgtggcgacg 31011510  T
Q  149 cgaaattggtcaaaaatgggcgcatgcatcacacgcgccgacagggcgcgtgaaccgtcagaggctcagagagagaaacgattttttggatagataggga 248  Q
    ||  |||||  |||||| ||||| ||| | |||||||| |||| |||||||||  ||||||| |  | |||||||||| |||||||||||||||||| ||    
T  31011511 cgtgattgggaaaaaattggcgcgtgcgttacacgcgcagacaaggcgcgtgacgcgtcagacgtgcggagagagaaa-gattttttggatagatagtga 31011609  T
Q  249 cacgtggcgcgttttaattggttgtccgaattctt 283  Q
    |||||||| |||||||||||| |||||| ||||||    
T  31011610 cacgtggcacgttttaattggctgtccggattctt 31011644  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 25033741 - 25033690
Alignment:
Q  232 ttttggatagatagggacacgtggcgcgttttaattggttgtccgaattctt 283  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  25033741 ttttggatagatagggacgcgtggcgcgttttaattggttgtccggattctt 25033690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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