View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_low_78 (Length: 281)
Name: NF16378_low_78
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_78 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 7663720 - 7663445
Alignment:
| Q |
1 |
agcgatggcccatacattaaccaaaagagttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggt |
100 |
Q |
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| T |
7663720 |
agcgatggcccatacattaaccaaaagagttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgtgggagggaaagaggt |
7663621 |
T |
|
| Q |
101 |
gttgatggatgcaagcggaaagtttcttttatcactgcttgtaggtaaggtaggttaggtatgtcatcttctttcacgttcctatcactgcccacaactt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7663620 |
gttgatggatgcaagcggaaagtttcttttatcactgcttgtaggtaaggtaggttaggtatgtcgtcttctttcacgttcctatcactgcccacaactt |
7663521 |
T |
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| Q |
201 |
tgtctaattcttcttggactttagctaaaattcttgggtttcgaattaattctgcaatggcccattctgtgctgct |
276 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7663520 |
tgtctaattcttcttggactttagctagaattcttgggtttcgaattaattctgcaatggcccattctgtggtgct |
7663445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 7620172 - 7620447
Alignment:
| Q |
1 |
agcgatggcccatacattaaccaaaagagttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggt |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7620172 |
agcgatggcccatacattgaccaaaagagttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggt |
7620271 |
T |
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| Q |
101 |
gttgatggatgcaagcggaaagtttcttttatcactgcttgtaggtaaggtaggttaggtatgtcatcttctttcacgttcctatcactgcccacaactt |
200 |
Q |
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| T |
7620272 |
gttgatggatgcaagcggaatgtttcttttatcactgcttgtaggtaaggtaggttaggtatgtcgtcttctttcacgttcctatctcgacccacaacat |
7620371 |
T |
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| Q |
201 |
tgtctaattcttcttggactttagctaaaattcttgggtttcgaattaattctgcaatggcccattctgtgctgct |
276 |
Q |
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|||| ||||||| ||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7620372 |
tgtccaattcttgttgaacttgagctaagattcttgggtttcgaattaattctgcaatggcccattctgtggtgct |
7620447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 5 - 266
Target Start/End: Complemental strand, 7669413 - 7669154
Alignment:
| Q |
5 |
atggcccatacattaaccaaaagagttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggtgttg |
104 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7669413 |
atggcccatacattaaccaaaagagttgaactctttggaacgtggtacccaaaaatctcacaactttcagatgcaattcgtgggagggaaagaggtgttg |
7669314 |
T |
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| Q |
105 |
atggatgcaagcggaaagtttcttttatcactgcttgtaggtaaggtaggttaggtatgtcatcttctttcacgttcctatcactgcccacaactttgtc |
204 |
Q |
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|||| |||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| ||||| |
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| T |
7669313 |
atgggtgcaagcgaaatgtttcttttatcactgtttgtaggtaaggtaggttaggtatgtcatct--tttcacgttcctatctcggcccacaacattgtc |
7669216 |
T |
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| Q |
205 |
taattcttcttggactttagctaaaattcttgggtttcgaattaattctgcaatggcccatt |
266 |
Q |
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||||||| ||| |||| |||||| |||||||||||| || | || |||||||||||||| |
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| T |
7669215 |
caattcttgttgaacttgagctaagattcttgggtttttgatcatttttgcaatggcccatt |
7669154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 7682955 - 7682739
Alignment:
| Q |
5 |
atggcccatacattaaccaaaagagttgaaccctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggtgttg |
104 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7682955 |
atggcccatacatttaccaaaagagttgaatcctttggaatgtggtacccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggtgtag |
7682856 |
T |
|
| Q |
105 |
atggatgcaagcggaaagtttcttttatcactgcttgtaggtaaggtaggttaggtatgtcatcttctttcacgttcctatcactgcccacaactttgtc |
204 |
Q |
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||||||||||||| || |||||||||| ||||||||| ||||||||||| | ||||| || ||||||||||||||||| || | || ||||| | || |
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| T |
7682855 |
atggatgcaagcgaaatgtttcttttaccactgcttgaaggtaaggtagttgaggtaaatcctcttctttcacgttcctgtctcgaccaacaacggtctc |
7682756 |
T |
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| Q |
205 |
taattcttcttggactt |
221 |
Q |
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|||||||| |||||||| |
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| T |
7682755 |
taattcttgttggactt |
7682739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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