View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_low_8 (Length: 583)
Name: NF16378_low_8
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 159 - 566
Target Start/End: Complemental strand, 29416162 - 29415755
Alignment:
| Q |
159 |
gtgccactgaattaaactatttatgtaatcctcaactttagttacaagggcctaagattggcttggctgcagtcgtgaattcaccaatagcgaatctcag |
258 |
Q |
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| T |
29416162 |
gtgccactgaattaaactatttatgtaatcctcaactttagttacaagggcctaagattggcttggctgcagtcgtgaattcaccaatagcgaatctcag |
29416063 |
T |
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| Q |
259 |
tcatcaatctacaatcctagcggctttgtatacgcaatgtggatctcagaagtttcacacacaattgaatctcggcagttcatttcatatcggtcagtcc |
358 |
Q |
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| T |
29416062 |
tcatcaatctacaatcctagaggctttgtatacgcaatgtggatctcagaagtttcacacacaattgaatctcggcagttcatttcatatcggtcagtcc |
29415963 |
T |
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| Q |
359 |
agatcagttattcccaaatcctttaattaaggtaagggtaatagctgaaaagattgtagagtataagcttcatcctgtccgcatagtctttatttagttt |
458 |
Q |
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| T |
29415962 |
agatcagttattcccaaatcctttaactaaggtaagggtaatagctgaaaagattgtagagtataagcttcatcctgtccgcatagtctttatttagttt |
29415863 |
T |
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| Q |
459 |
ttgcctcgacgtttcgtgttgtatgaaatttgttatataactattagatcacagtcctcatacaagaaaaactatgacagattaaatatgccagggcctc |
558 |
Q |
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| T |
29415862 |
ttgcctcgacgtttcgtgttgtatgaaatttgttatataactattagatcacagtcctcatacaagaaaaactatgacagattaaatatgccagggcctc |
29415763 |
T |
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| Q |
559 |
ctatatca |
566 |
Q |
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|||||||| |
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| T |
29415762 |
ctatatca |
29415755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29416320 - 29416262
Alignment:
| Q |
1 |
cactaaaggaggcacctaccttagtgtttgttttaatttgccttctcttccaacaaaaa |
59 |
Q |
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| T |
29416320 |
cactaaaggaggcacctaccttagtgtttgttttaatttgccttctcttccaacaaaaa |
29416262 |
T |
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