View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_low_83 (Length: 274)
Name: NF16378_low_83
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_83 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 28463500 - 28463739
Alignment:
| Q |
18 |
aacataacattacatactaattttaggagcatccagttattcataacataacattacatactaatttgcagataatataatgtttttaaatgatgttctt |
117 |
Q |
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| T |
28463500 |
aacataacattacatactaattttaggagcatctagttattcataacataacattacatactaatttgcagataatataatgtttttaaatgatgtactt |
28463599 |
T |
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| Q |
118 |
tttggacgaattttcttacttcgagattcatgaacataacatgtttctctttctcataaacctatttcctcttacgatgaggaattttaagcacaaataa |
217 |
Q |
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| T |
28463600 |
tatagacgagttttcttacttcgagattcatgaacataacatgtttctctttctcataaacctatttccccttacgatgaggaatttgaagcacaaataa |
28463699 |
T |
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| Q |
218 |
acataagcttttgaagcacgtgaatcat--tagtaacttt |
255 |
Q |
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| T |
28463700 |
gcataaactttttaagcaggtgaatcatagtagtaacttt |
28463739 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 27782198 - 27782154
Alignment:
| Q |
43 |
ggagcatccagttattcataacataacattacatactaatttgca |
87 |
Q |
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| T |
27782198 |
ggagcatccaatcattcataacataacattgcataccaatttgca |
27782154 |
T |
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