View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_low_86 (Length: 267)
Name: NF16378_low_86
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_86 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 24 - 246
Target Start/End: Complemental strand, 41896633 - 41896424
Alignment:
| Q |
24 |
aaattaaaagcaccaaccccttgttttatcacnnnnnnnccttcttcttatccattatctaccatgatctaccatgatcctccacctaacattccattcc |
123 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
41896633 |
aaattaaaagcaccaaccccttgttttatcactttttttccttcttcttatccattatctaccatgatc----------ctccacctaacattccgttcc |
41896544 |
T |
|
| Q |
124 |
aataaccagtagaatcaccttgagttctattttgctgatgttcaaactcaccagtactatttggaacttgttgctgctgttgcttattcaactgatcctc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896543 |
aataaccagtagaatcaccttgagttctattttgctgatgttcaaactcacc---actatttggaacttgttgctgctgttgcttattcaactgatcctc |
41896447 |
T |
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| Q |
224 |
tacaacaggaaacaacatccttg |
246 |
Q |
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||||||||||||||||||||||| |
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| T |
41896446 |
tacaacaggaaacaacatccttg |
41896424 |
T |
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