View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_low_90 (Length: 262)
Name: NF16378_low_90
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_90 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 10 - 154
Target Start/End: Complemental strand, 962334 - 962191
Alignment:
| Q |
10 |
attattcttatctgatcatggaggtgaaaggagaatttcttgtgt--tactttttgtgttaggagattaagcctgcatgcgcaacaacttgcacatgcta |
107 |
Q |
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| T |
962334 |
attattcttatctgatcatggaggtgaaaggagaatttcttgtgtgttactttttgtgttaggagattaagcatgcatgcgcaacaacttgcacatgcta |
962235 |
T |
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| Q |
108 |
ttattatgacatttaaattccatggctttaatttggttctttacgca |
154 |
Q |
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| T |
962234 |
---ttatgacatttaaattccatggctttaatttggttctttacgca |
962191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 159 - 246
Target Start/End: Complemental strand, 962133 - 962048
Alignment:
| Q |
159 |
gaatgtactatatttgaaatttgaaatgtaaggatataaatgcttctaattccaggtgcatgcaaattgagagtaaagttaatgcatg |
246 |
Q |
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| T |
962133 |
gaatgtactatatttgaaatttgaaatgtaaggata--aatccttctaattccaggtacatgcaaattgagagtaaagttaatgcatg |
962048 |
T |
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