View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16378_low_93 (Length: 256)
Name: NF16378_low_93
Description: NF16378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16378_low_93 |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 13888476 - 13888269
Alignment:
| Q |
28 |
aatactatgtgcaattgaatcagaaacagaattcatgatccaagaatggatgacattattgcatctcttctaagcagaaaaattcaaatcatcaggtgta |
127 |
Q |
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| T |
13888476 |
aatactctgtgcaatattatcataaacagagttcataatctaggagtgaatgagattattgcatctttcccatgcagaaaaattcaaatcatcaaatgta |
13888377 |
T |
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| Q |
128 |
ggaggatcaatggttccatctacaaactgaaacttattcttgccaccaagacctctacgcatagcacgtgcccaagcttgataattggacgtgttcaatg |
227 |
Q |
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| T |
13888376 |
ggaggaggaattgttccatctacaaactgatatttgttcttgccaccaagacctctacgcatagcacgcgcccaagcttgataattggacgtgttcaact |
13888277 |
T |
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| Q |
228 |
gaggcttg |
235 |
Q |
| |
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|||||||| |
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| T |
13888276 |
gaggcttg |
13888269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 11021167 - 11021249
Alignment:
| Q |
13 |
aatatcaatgtatagaatactatgtgcaattgaatcagaaacagaattcatgatccaagaatggatgacattattgcatctct |
95 |
Q |
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| T |
11021167 |
aatatcaatgtatagaatactatgtgcagttgaatcagaaacataattcatgatccaagtatggatgacattattgcatctct |
11021249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 11021246 - 11021304
Alignment:
| Q |
180 |
ctctacgcatagcacgtgcccaagcttgataattggacgtgttcaatggaggcttggtt |
238 |
Q |
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| T |
11021246 |
ctctacgcatagcacgtgcccaagcttgataattggacgtgttcaatggaggcttggtt |
11021304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 15095355 - 15095300
Alignment:
| Q |
169 |
gccaccaagacctctacgcatagcacgtgcccaagcttgataattggacgtgttca |
224 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15095355 |
gccaccaagacctctgcgcatagcacgtgcccaagcttgataattggacgtgttca |
15095300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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