View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16379_high_1 (Length: 755)
Name: NF16379_high_1
Description: NF16379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16379_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 271 - 747
Target Start/End: Original strand, 10050952 - 10051428
Alignment:
| Q |
271 |
cagtgaagaatgaatgtatagatagtccaggaacaaattaatatcaaaaagaatgtgaagcctccaaatgattcttggtttggggaataagcattagagt |
370 |
Q |
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| T |
10050952 |
cagtgaagaat-aatgtatagatagtccaggaacaaattaatttcaaaaagaatgtgaagcttccgaatgattcttggtttggggaataagcattagagt |
10051050 |
T |
|
| Q |
371 |
taattgatgttctaaattaatgctttttattgcttacccttccaagaagatagttactaagttcaagcattaatacatcacactaatatgttttaatatt |
470 |
Q |
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| T |
10051051 |
aaattgatgtcctaaagtaatgttttttattgcttacccttccaagaagatagtttctaagttctggcacgaacacatcacactaatatgttttaatttt |
10051150 |
T |
|
| Q |
471 |
taacttaaatggcagcggtatttgattacaagtcttggattgggaaggataatgactggcaacccaaggccatgatagcttttcatgcagtagctgtgaa |
570 |
Q |
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| T |
10051151 |
taaattaaattgcagcggtatttgattacaagtcatggattgggaaggataatgactggcaacccaaggccatgattgcttttcatgctgtagctgtgaa |
10051250 |
T |
|
| Q |
571 |
cactaatttacaagaaaatgaaggttagaaacgttagcagctttcatgtccctgactcaattactgaagtaaatatcagaaaacctg-tataagaataag |
669 |
Q |
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| T |
10051251 |
cactaatttacaagaaaatgaaggttagaaacgttaacagctttcatgtccctgactcaattactgaagtaaatatcagaaaacctgctataagaataag |
10051350 |
T |
|
| Q |
670 |
tacaaatctgatgacagcaagacgctgcatattaagcagttaccaaaacaaacaaatcagtaaaatcagccctatgct |
747 |
Q |
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| T |
10051351 |
tacaaatctgatgacagcaacatgctgcatattaaccagttaccaacacaaacaaatcagtaaaatcagccctatgct |
10051428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 23 - 248
Target Start/End: Original strand, 10050727 - 10050955
Alignment:
| Q |
23 |
gctgctggctccatttttgatgtcaaacacctggcgagttcttctacgtctggtaaatctttatacatcgagtcaacttactaacagttagtggccctgt |
122 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||| ||| |
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| T |
10050727 |
gctgctggctccatttttgatgtcaaacatctgtcgagttcttctacgtctggtaaatctttatacatcgagtaaacttaccaacagtcagtggccttgt |
10050826 |
T |
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| Q |
123 |
taatgtttttctttaagaattaagataaaccaccaatctaatgtcatgtcattgcacaaagtagtcacattctgtctagcacaatagaaacatatata-- |
220 |
Q |
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| T |
10050827 |
taatgtttttctttaagaattaagataaaccaccactctcctgtcatggcattgcataaagtagtcacattctggctagcagaatagaaacatatataca |
10050926 |
T |
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| Q |
221 |
-tgaaattatactttttactagtttcagt |
248 |
Q |
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| T |
10050927 |
tggaaattatgctttttactagtttcagt |
10050955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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