View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16379_high_10 (Length: 428)

Name: NF16379_high_10
Description: NF16379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16379_high_10
NF16379_high_10
[»] chr1 (11 HSPs)
chr1 (19-428)||(13857554-13857964)
chr1 (67-210)||(37046988-37047130)
chr1 (77-168)||(6127959-6128050)
chr1 (77-156)||(44486142-44486221)
chr1 (74-156)||(44417447-44417528)
chr1 (67-140)||(15581142-15581214)
chr1 (92-184)||(16539628-16539720)
chr1 (77-168)||(34228886-34228977)
chr1 (77-169)||(39012303-39012395)
chr1 (100-156)||(39964540-39964596)
chr1 (96-144)||(47360510-47360558)
[»] chr5 (5 HSPs)
chr5 (96-200)||(16247070-16247174)
chr5 (96-141)||(15485419-15485464)
chr5 (96-156)||(16457841-16457902)
chr5 (100-140)||(16172984-16173024)
chr5 (96-156)||(32340321-32340381)
[»] chr2 (7 HSPs)
chr2 (96-200)||(26176266-26176370)
chr2 (67-130)||(43963999-43964061)
chr2 (96-156)||(3697384-3697444)
chr2 (96-140)||(6099519-6099563)
chr2 (96-154)||(8192466-8192524)
chr2 (96-156)||(7250260-7250320)
chr2 (96-140)||(26482124-26482168)
[»] chr6 (8 HSPs)
chr6 (96-210)||(6383934-6384047)
chr6 (342-404)||(5528637-5528700)
chr6 (342-403)||(5529091-5529153)
chr6 (92-141)||(17149584-17149633)
chr6 (96-156)||(9208276-9208336)
chr6 (19-70)||(5529279-5529330)
chr6 (96-210)||(33499498-33499613)
chr6 (100-156)||(6691535-6691591)
[»] chr3 (10 HSPs)
chr3 (96-156)||(15034376-15034436)
chr3 (67-140)||(18316499-18316571)
chr3 (85-141)||(34844391-34844447)
chr3 (67-135)||(42799753-42799820)
chr3 (96-156)||(53863852-53863912)
chr3 (229-268)||(50731238-50731277)
chr3 (229-268)||(50781577-50781616)
chr3 (67-140)||(54990706-54990778)
chr3 (92-158)||(36660790-36660855)
chr3 (96-140)||(35623267-35623311)
[»] chr8 (6 HSPs)
chr8 (67-156)||(18897169-18897258)
chr8 (96-169)||(40136935-40137007)
chr8 (229-268)||(20306069-20306108)
chr8 (229-268)||(21092702-21092741)
chr8 (96-148)||(22779686-22779738)
chr8 (96-156)||(26168961-26169021)
[»] chr7 (8 HSPs)
chr7 (67-156)||(48125159-48125247)
chr7 (96-140)||(25956293-25956337)
chr7 (229-268)||(23330740-23330779)
chr7 (229-268)||(31274074-31274113)
chr7 (95-156)||(22696347-22696408)
chr7 (96-185)||(28646997-28647086)
chr7 (100-156)||(21035153-21035209)
chr7 (96-140)||(23637016-23637060)
[»] chr4 (8 HSPs)
chr4 (96-153)||(56409982-56410039)
chr4 (96-140)||(21344848-21344892)
chr4 (96-140)||(37980148-37980192)
chr4 (95-141)||(28929702-28929748)
chr4 (96-134)||(38206132-38206170)
chr4 (96-157)||(5998671-5998732)
chr4 (67-135)||(6606061-6606128)
chr4 (123-187)||(22630268-22630332)


Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Complemental strand, 13857964 - 13857554
Alignment:
Q  19 ttactaacctctagatttttaaaatcacttctgaaaaaggataaacttccacttgggtttggtctagtgttgatggtttgggaccttggagagtgctcct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13857964 ttactaacctctagatttttaaaatcacttctgaaaaaggataaacttccacttgggtttggtctagtgttgatggtttgggaccttggagagtgctcct 13857865  T
Q  119 atcaaggtctcaggttcaattcctccaggtgccaattttgatggcctagtcgatacaaagatttgctttacatttaaatgggaccaccacaaatgcacaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13857864 atcaaggtctcaggttcaattcctccaggtgccaattttgatggcctagtcgatacaaagatttgctttacatttaaatgggaccaccacaaatgcacaa 13857765  T
Q  219 tgaaatacgacccctcaaattagtcgatccttggaccggataccgagttt-nnnnnnnnnncacgctcatgtggaggcaaatctattcatatgaacttgt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||    
T  13857764 tgaaatacgacccctcaaattagtcgatccttggaccggataccgagtttaaaaaaaaaaacacgctcatgtggaggcaaatctattcatatgaacttgt 13857665  T
Q  318 atttgaccaagcaagaaattgccctctcaacaaatagtatctacttgcaacatgttaaaatcattagaaacatgttcagctcaaaactaacacaagatat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13857664 atttgaccaagcaagaaattgccctctcaacaaatagtatctacttgcaacatgttaaaatcattagaaacatgttcagctcaaaactaacacaagatat 13857565  T
Q  418 aagcctatacc 428  Q
    |||||||||||    
T  13857564 aagcctatacc 13857554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 67 - 210
Target Start/End: Original strand, 37046988 - 37047130
Alignment:
Q  67 ccacttgggtttggtctagtgttgatggtttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattttgatggccta 166  Q
    ||||||||||| ||||| ||| || ||| |||||||||||||| |||||||| |||||||||||||||  ||||| || ||| | ||||||| ||| |||    
T  37046988 ccacttgggtt-ggtctggtggtgttggcttgggaccttggagtgtgctcctctcaaggtctcaggtttgattccccctggtacaaattttggtgggcta 37047086  T
Q  167 gtcgatacaaagatttgctttacatttaaatgggaccaccacaa 210  Q
    ||| ||||| || |||||| ||  |||||||||| || ||||||    
T  37047087 gtccatacagagctttgctctagctttaaatggggcccccacaa 37047130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 6128050 - 6127959
Alignment:
Q  77 ttggtctagtgttgatggtttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattttgatggcctagt 168  Q
    ||||||| ||| || |||||||||||||||||| |||||||| ||||||||||| |||| ||||  || ||||||||||||| ||| |||||    
T  6128050 ttggtctggtggtgttggtttgggaccttggagcgtgctcctctcaaggtctcaagttcgattctccccggtgccaattttggtgggctagt 6127959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 44486221 - 44486142
Alignment:
Q  77 ttggtctagtgttgatggtttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattt 156  Q
    |||| |||||| || |||||||| ||||||||| |||||||| |||||||||||  ||||||||  || |||||||||||    
T  44486221 ttggcctagtggtgttggtttggaaccttggagtgtgctcctctcaaggtctcaaattcaattctccccggtgccaattt 44486142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 44417528 - 44417447
Alignment:
Q  74 ggtttggtctagtgttgatggtttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattt 156  Q
    ||||||||||| || || ||| |||||||||||||| ||||| || |||||||||||||||  ||||| || |||||||||||    
T  44417528 ggtttggtctaatggtgctggcttgggaccttggagtgtgctgctctcaaggtctcaggtttgattcc-cccggtgccaattt 44417447  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 15581214 - 15581142
Alignment:
Q  67 ccacttgggtttggtctagtgttgatggtttgggaccttggagagtgctcctatcaaggtctcaggttcaattc 140  Q
    ||||||||||| || || ||| || ||| |||||||||||||| |||||||| | |||||||||||||||||||    
T  15581214 ccacttgggtt-ggcctggtggtgttggcttgggaccttggagtgtgctcctctaaaggtctcaggttcaattc 15581142  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 184
Target Start/End: Original strand, 16539628 - 16539720
Alignment:
Q  92 tggtttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattttgatggcctagtcgatacaaagatttgc 184  Q
    |||||||||| ||||||| | ||||||  ||||||||||||||  |||||  | ||||||||||||| ||| | |||| ||||| || |||||    
T  16539628 tggtttgggatcttggagtgagctccttgcaaggtctcaggtttgattccctctggtgccaattttggtgggcaagtccatacagagctttgc 16539720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 168
Target Start/End: Original strand, 34228886 - 34228977
Alignment:
Q  77 ttggtctagtgttgatggtttgggaccttggagagtgctcctatcaaggtctcaggttcaattc-ctccaggtgccaattttgatggcctagt 168  Q
    ||||||| ||| || ||| ||||||||| |||| ||| |||| |||||||||||||||  |||| |||| ||||||||||||| ||| |||||    
T  34228886 ttggtctggtggtgttggcttgggacctcggagtgtgttcctctcaaggtctcaggttggattctctcc-ggtgccaattttggtgggctagt 34228977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 39012303 - 39012395
Alignment:
Q  77 ttggtctagtgttgatggtttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattttgatggcctagtc 169  Q
    |||| |||||| || ||| |||||||||||||| |||||| | ||||||||| |||||  ||||| |  ||||||||||| | ||| ||||||    
T  39012303 ttggcctagtggtgttggcttgggaccttggagtgtgctcttctcaaggtcttaggtttgattcccctcggtgccaatttcggtgggctagtc 39012395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 39964540 - 39964596
Alignment:
Q  100 gaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattt 156  Q
    |||||||||| |||||||| |||||||||||||||  |||||  | |||||||||||    
T  39964540 gaccttggagtgtgctcctctcaaggtctcaggtttgattccctctggtgccaattt 39964596  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 47360558 - 47360510
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctcc 144  Q
    |||||||||||||| |||||||| ||||| |||||||||| | ||||||    
T  47360558 ttgggaccttggagtgtgctcctctcaagatctcaggttcgaatcctcc 47360510  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 16247174 - 16247070
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattttgatggcctagtcgatacaaagatttgctttacatttaa 195  Q
    ||||||||||| || |||||||||||||||||||||||||||| || || ||||||||| ||| ||| |||||| ||||| |  ||||||||   |||||    
T  16247174 ttgggaccttgcagtgtgctcctatcaaggtctcaggttcaatcccccccggtgccaatcttggtgggctagtccatacagaactttgctttgggtttaa 16247075  T
Q  196 atggg 200  Q
    |||||    
T  16247074 atggg 16247070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 15485464 - 15485419
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattcc 141  Q
    |||||||||||||| |||||||| |||||||||||||||| |||||    
T  15485464 ttgggaccttggagtgtgctcctctcaaggtctcaggttcgattcc 15485419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 16457841 - 16457902
Alignment:
Q  96 ttgggaccttggagagtgctccta-tcaaggtctcaggttcaattcctccaggtgccaattt 156  Q
    |||||||||||||| ||||||||  ||||||||||| |||||||||  || |||||||||||    
T  16457841 ttgggaccttggagtgtgctcctcctcaaggtctcatgttcaattctccccggtgccaattt 16457902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 16173024 - 16172984
Alignment:
Q  100 gaccttggagagtgctcctatcaaggtctcaggttcaattc 140  Q
    |||||||||| |||||||| |||||||||||||||| ||||    
T  16173024 gaccttggagtgtgctcctctcaaggtctcaggttcgattc 16172984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 32340381 - 32340321
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattt 156  Q
    |||||||||||||| |||||||| ||||||||| |||||| | |||| | | |||||||||    
T  32340381 ttgggaccttggagtgtgctcctctcaaggtcttaggttcgaatcctaccgatgccaattt 32340321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 26176370 - 26176266
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattttgatggcctagtcgatacaaagatttgctttacatttaa 195  Q
    |||||||||||| | |||||||| |||||||||||| ||| ||||  || ||||||||||||| |||||||||| ||||| |  ||||||||  ||||||    
T  26176370 ttgggaccttggggtgtgctcctctcaaggtctcagattcgattctccctggtgccaattttggtggcctagtccatacagacctttgctttggatttaa 26176271  T
Q  196 atggg 200  Q
    |||||    
T  26176270 atggg 26176266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 43964061 - 43963999
Alignment:
Q  67 ccacttgggtttggtctagtgttgatggtttgggaccttggagagtgctcctatcaaggtctca 130  Q
    ||||||||||| ||||||||  || |||||||||||||||||| |||||||| |||||||||||    
T  43964061 ccacttgggtt-ggtctagtagtgttggtttgggaccttggagtgtgctcctctcaaggtctca 43963999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 3697444 - 3697384
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattt 156  Q
    ||||||||||||||||||||||| |||||||||| ||||| ||||  |  |||||||||||    
T  3697444 ttgggaccttggagagtgctcctctcaaggtctctggttcgattctcctcggtgccaattt 3697384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 6099563 - 6099519
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattc 140  Q
    |||||||||||||| |||||||| |||||||||||||||| ||||    
T  6099563 ttgggaccttggagtgtgctcctctcaaggtctcaggttcgattc 6099519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 8192524 - 8192466
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaat 154  Q
    |||||| ||||||| |||||||| |||||||||||||||| |||||  | |||||||||    
T  8192524 ttgggatcttggagtgtgctcctctcaaggtctcaggttcgattccctctggtgccaat 8192466  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 7250260 - 7250320
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattt 156  Q
    |||||||||||||| |||||||| ||||| ||||| |||  |||||||| || ||||||||    
T  7250260 ttgggaccttggagtgtgctcctctcaagatctcaagtttgattcctcccggagccaattt 7250320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 26482124 - 26482168
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattc 140  Q
    ||||||||| |||| |||||||| |||||||||||||||| ||||    
T  26482124 ttgggacctaggagtgtgctcctctcaaggtctcaggttcgattc 26482168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 6384047 - 6383934
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattttgatggcctagtcgatacaaagatttgctttacatttaa 195  Q
    |||||||||||||| |||||||| ||||||||||||||||||| ||| | |||||||||||   ||| |||||| ||| | || ||||||||   |||||    
T  6384047 ttgggaccttggagtgtgctcctctcaaggtctcaggttcaatccct-cgggtgccaatttcagtgggctagtccataaagagctttgctttggctttaa 6383949  T
Q  196 atgggaccaccacaa 210  Q
    |||||||| ||||||    
T  6383948 atgggacccccacaa 6383934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 404
Target Start/End: Complemental strand, 5528700 - 5528637
Alignment:
Q  342 tctcaacaaatagtatctacttgcaa-catgttaaaatcattagaaacatgttcagctcaaaac 404  Q
    |||||||||||  ||||||||| ||| |||||||||||||||||||||| ||||||||||||||    
T  5528700 tctcaacaaatcatatctacttacaatcatgttaaaatcattagaaacaagttcagctcaaaac 5528637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 403
Target Start/End: Complemental strand, 5529153 - 5529091
Alignment:
Q  342 tctcaacaaatagtatctacttgcaa-catgttaaaatcattagaaacatgttcagctcaaaa 403  Q
    |||||||||||| ||||||||||||| ||| ||||||  |||||||||||||||| |||||||    
T  5529153 tctcaacaaataatatctacttgcaagcatcttaaaacaattagaaacatgttcaactcaaaa 5529091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 17149633 - 17149584
Alignment:
Q  92 tggtttgggaccttggagagtgctcctatcaaggtctcaggttcaattcc 141  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| |||||    
T  17149633 tggtttgggatcttggagtgtgctcctctcaaggtctcaggttcgattcc 17149584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 9208276 - 9208336
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattt 156  Q
    |||||| |||||||  ||||||| |||||||||||||||| ||||| || |||||||||||    
T  9208276 ttgggatcttggagtttgctcctctcaaggtctcaggttcgattccccctggtgccaattt 9208336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 5529330 - 5529279
Alignment:
Q  19 ttactaacctctagatttttaaaatcacttctgaaaaaggataaacttccac 70  Q
    ||||||||| ||  ||||||||||||||||||||| ||| ||||||||||||    
T  5529330 ttactaaccactcaatttttaaaatcacttctgaagaagtataaacttccac 5529279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 33499498 - 33499613
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttca-attcctccaggtgccaattttgatggcctagtcgatacaaagatttgctttacattta 194  Q
    |||||| |||||||  ||||||| ||||||||||||||||| |||||  | |||| |||||| | ||| |||||| |||||||  ||||||||   ||||    
T  33499498 ttgggatcttggagtttgctcctctcaaggtctcaggttcagattccctctggtgtcaatttcggtgggctagtccatacaaatctttgctttggcttta 33499597  T
Q  195 aatgggaccaccacaa 210  Q
    |||||| || ||||||    
T  33499598 aatgggccctccacaa 33499613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 6691591 - 6691535
Alignment:
Q  100 gaccttggagagtgctcctatcaaggtctcaggttcaattc-ctccaggtgccaattt 156  Q
    |||||||||| |||||||| |||||||||||||||| |||| |||| |||||||||||    
T  6691591 gaccttggagtgtgctcctctcaaggtctcaggttcgattctctcc-ggtgccaattt 6691535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 15034376 - 15034436
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattt 156  Q
    |||||||||||||| ||| |||| |||||||||||||||||||||  || |||||||||||    
T  15034376 ttgggaccttggagggtgatcctctcaaggtctcaggttcaattctccctggtgccaattt 15034436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 18316571 - 18316499
Alignment:
Q  67 ccacttgggtttggtctagtgttgatggtttgggaccttggagagtgctcctatcaaggtctcaggttcaattc 140  Q
    ||||||||||| ||||| ||| || ||| |||||||||||||| |||||||| ||||||||| |||||| ||||    
T  18316571 ccacttgggtt-ggtctggtggtgctggcttgggaccttggagtgtgctcctctcaaggtcttaggttcgattc 18316499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 34844391 - 34844447
Alignment:
Q  85 gtgttgatggtttgggaccttggagagtgctcctatcaaggtctcaggttcaattcc 141  Q
    |||||| ||| ||| |||||||||| |||||||| |||||||||||||||| |||||    
T  34844391 gtgttgttggcttgagaccttggagtgtgctcctctcaaggtctcaggttcgattcc 34844447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 42799820 - 42799753
Alignment:
Q  67 ccacttgggtttggtctagtgttgatggtttgggaccttggagagtgctcctatcaaggtctcaggttc 135  Q
    ||||||||||| || || ||| || ||| |||||||||||||| |||||||| ||||||||||||||||    
T  42799820 ccacttgggtt-ggcctggtggtgttggcttgggaccttggagtgtgctcctctcaaggtctcaggttc 42799753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 53863912 - 53863852
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattt 156  Q
    |||||||||||||| |||||||| ||||||||| |||||||||||   | |||||||||||    
T  53863912 ttgggaccttggagtgtgctcctctcaaggtcttaggttcaattctctctggtgccaattt 53863852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 50731277 - 50731238
Alignment:
Q  229 cccctcaaattagtcgatccttggaccggataccgagttt 268  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  50731277 cccctcagattagtcgatccttggatcggataccgagttt 50731238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 50781577 - 50781616
Alignment:
Q  229 cccctcaaattagtcgatccttggaccggataccgagttt 268  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  50781577 cccctcagattagtcgatccttggatcggataccgagttt 50781616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 54990706 - 54990778
Alignment:
Q  67 ccacttgggtttggtctagtgttgatggtttgggaccttggagagtgctcct-atcaaggtctcaggttcaattc 140  Q
    |||||||||||  || |||||||| ||| |||||||||||||| ||||||||  |||||||||||||||| ||||    
T  54990706 ccacttgggtt--gtttagtgttgttggcttgggaccttggagcgtgctcctcctcaaggtctcaggttcgattc 54990778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 36660790 - 36660855
Alignment:
Q  92 tggtttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattttg 158  Q
    |||||| ||| |||||||  ||||||| |||||||||||||||||||| |||| | |||||||||||    
T  36660790 tggtttaggatcttggagtttgctcctctcaaggtctcaggttcaatt-ctcccgttgccaattttg 36660855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 35623311 - 35623267
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattc 140  Q
    |||||||||||||| |||||||| ||||||||||| |||| ||||    
T  35623311 ttgggaccttggagtgtgctcctctcaaggtctcatgttcgattc 35623267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 18897169 - 18897258
Alignment:
Q  67 ccacttgggtttggtctagtgttgatggtttgggaccttggagagtgctcct-atcaaggtctcaggttcaattcctccaggtgccaattt 156  Q
    ||||||||||| || |||||| || |||||||||||||| ||| ||||||||  ||||||||||| |||| |||| ||| |||||||||||    
T  18897169 ccacttgggtt-ggcctagtggtgttggtttgggaccttagagtgtgctcctcctcaaggtctcatgttcgattcttcctggtgccaattt 18897258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 40137007 - 40136935
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattttgatggcctagtc 169  Q
    |||||||||||||| |||||||| |||||||||||||||  ||| |||| ||||||||||| | ||| ||||||    
T  40137007 ttgggaccttggagtgtgctcctctcaaggtctcaggtttgatt-ctcccggtgccaatttcggtgggctagtc 40136935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 20306069 - 20306108
Alignment:
Q  229 cccctcaaattagtcgatccttggaccggataccgagttt 268  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  20306069 cccctcgaattagtcgatccttggatcggataccgagttt 20306108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 21092702 - 21092741
Alignment:
Q  229 cccctcaaattagtcgatccttggaccggataccgagttt 268  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  21092702 cccctcgaattagtcgatccttggatcggataccgagttt 21092741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 22779686 - 22779738
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggt 148  Q
    |||||||||||||  |||||||| |||||||||||||||| | ||||| ||||    
T  22779686 ttgggaccttggaatgtgctcctctcaaggtctcaggttcgaatcctctaggt 22779738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 26169021 - 26168961
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattt 156  Q
    |||||| |||||||  ||||||| |||||||||||||||  |||||||| | |||||||||    
T  26169021 ttgggatcttggagtttgctcctctcaaggtctcaggtttgattcctcctgatgccaattt 26168961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 48125247 - 48125159
Alignment:
Q  67 ccacttgggtttggtctagtgttgatggtttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattt 156  Q
    ||||||||||| ||||| ||| || ||| |||||||||||||| ||||||||   ||||||||||||||||||   || |||||||||||    
T  48125247 ccacttgggtt-ggtctggtggtgttggcttgggaccttggagtgtgctcctccgaaggtctcaggttcaattttccccggtgccaattt 48125159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 25956337 - 25956293
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattc 140  Q
    |||||||||||||| |||||||| ||||||||| |||||||||||    
T  25956337 ttgggaccttggagtgtgctcctctcaaggtcttaggttcaattc 25956293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 23330779 - 23330740
Alignment:
Q  229 cccctcaaattagtcgatccttggaccggataccgagttt 268  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  23330779 cccctcaaattagtcaatccttggatcggataccgagttt 23330740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 31274074 - 31274113
Alignment:
Q  229 cccctcaaattagtcgatccttggaccggataccgagttt 268  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  31274074 cccctcgaattagtcgattcttggaccggataccgagttt 31274113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 22696347 - 22696408
Alignment:
Q  95 tttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattt 156  Q
    ||||||| ||||||| |||||||| |||||||||||||||  |||||  | |||||||||||    
T  22696347 tttgggatcttggagtgtgctcctctcaaggtctcaggtttgattccctctggtgccaattt 22696408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 28646997 - 28647086
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattttgatggcctagtcgatacaaagatttgct 185  Q
    |||||| ||||||| ||||| || |||||||||||||||| |||||  | ||||||||||| | ||| | |||| ||||| || ||||||    
T  28646997 ttgggatcttggagtgtgcttctctcaaggtctcaggttcgattccctctggtgccaatttcggtgggcaagtcaatacagagttttgct 28647086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 21035209 - 21035153
Alignment:
Q  100 gaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaattt 156  Q
    |||||||||| |||||||| |||||| |||| || | | ||||||||||||||||||    
T  21035209 gaccttggagtgtgctcctctcaaggactcaagtccgaatcctccaggtgccaattt 21035153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 23637060 - 23637016
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattc 140  Q
    |||||||||||||| |||||||| |||||||| || |||||||||    
T  23637060 ttgggaccttggagtgtgctcctctcaaggtcgcacgttcaattc 23637016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 56409982 - 56410039
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaa 153  Q
    |||||||||||||| |||||||| |||||||||||||||| ||||  || ||||||||    
T  56409982 ttgggaccttggagtgtgctcctctcaaggtctcaggttcgattctccctggtgccaa 56410039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 21344848 - 21344892
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattc 140  Q
    |||||||||||||| |||||||| ||||||||||| |||||||||    
T  21344848 ttgggaccttggagtgtgctcctctcaaggtctcatgttcaattc 21344892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 37980192 - 37980148
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattc 140  Q
    |||||||||||||| |||||||| |||||||||||||||| ||||    
T  37980192 ttgggaccttggagtgtgctcctctcaaggtctcaggttcgattc 37980148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 28929702 - 28929748
Alignment:
Q  95 tttgggaccttggagagtgctcctatcaaggtctcaggttcaattcc 141  Q
    |||||||||||| || |||||||| |||||||||||||||| |||||    
T  28929702 tttgggaccttgaagtgtgctcctttcaaggtctcaggttcgattcc 28929748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 38206170 - 38206132
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggtt 134  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  38206170 ttgggaccttggagtgtgctcctctcaaggtctcaggtt 38206132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 5998732 - 5998671
Alignment:
Q  96 ttgggaccttggagagtgctcctatcaaggtctcaggttcaattcctccaggtgccaatttt 157  Q
    |||||||||||||| |||||||| |||||||||||  ||| | ||||||  |||||||||||    
T  5998732 ttgggaccttggagtgtgctcctctcaaggtctcacattcgaatcctccttgtgccaatttt 5998671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 6606061 - 6606128
Alignment:
Q  67 ccacttgggtttggtctagtgttgatggtttgggaccttggagagtgctcctatcaaggtctcaggttc 135  Q
    ||||||||||| |||||  || || ||| |||||||||||||||||| |||| ||||| ||||||||||    
T  6606061 ccacttgggtt-ggtctgatggtgttggcttgggaccttggagagtgatcctttcaagatctcaggttc 6606128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 22630332 - 22630268
Alignment:
Q  123 aggtctcaggttcaattcctccaggtgccaattttgatggcctagtcgatacaaagatttgcttt 187  Q
    ||||||||||||| |||||  | ||||||||||||| ||| | |||| |||||||| ||||||||    
T  22630332 aggtctcaggttcgattccctctggtgccaattttggtgggcaagtccatacaaagttttgcttt 22630268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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