View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16379_high_12 (Length: 421)

Name: NF16379_high_12
Description: NF16379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16379_high_12
NF16379_high_12
[»] scaffold0105 (6 HSPs)
scaffold0105 (109-413)||(492-796)
scaffold0105 (299-413)||(2073-2187)
scaffold0105 (299-413)||(6859-6973)
scaffold0105 (299-413)||(14224-14338)
scaffold0105 (299-413)||(50504-50618)
scaffold0105 (299-413)||(32106-32220)
[»] chr4 (12 HSPs)
chr4 (34-413)||(8183773-8184155)
chr4 (21-291)||(8186957-8187229)
chr4 (113-326)||(1600474-1600687)
chr4 (104-244)||(659755-659895)
chr4 (140-231)||(7225809-7225900)
chr4 (34-244)||(55908641-55908853)
chr4 (56-153)||(1548428-1548527)
chr4 (113-233)||(53761696-53761816)
chr4 (48-222)||(553467-553643)
chr4 (56-155)||(546909-547010)
chr4 (349-406)||(547204-547261)
chr4 (74-155)||(1519144-1519227)
[»] scaffold0345 (1 HSPs)
scaffold0345 (299-413)||(6759-6873)
[»] chr8 (6 HSPs)
chr8 (20-243)||(18315187-18315412)
chr8 (23-222)||(34936098-34936299)
chr8 (59-153)||(17628018-17628114)
chr8 (34-156)||(27922482-27922606)
chr8 (42-155)||(32151283-32151398)
chr8 (261-313)||(32151501-32151553)
[»] chr2 (1 HSPs)
chr2 (34-244)||(1037577-1037789)
[»] chr6 (2 HSPs)
chr6 (261-326)||(9411555-9411620)
chr6 (109-153)||(12102317-12102361)
[»] chr3 (3 HSPs)
chr3 (20-238)||(51113700-51113920)
chr3 (24-109)||(51764490-51764575)
chr3 (261-305)||(514580-514624)
[»] chr1 (2 HSPs)
chr1 (266-326)||(9586844-9586904)
chr1 (266-325)||(9581276-9581335)
[»] scaffold0295 (1 HSPs)
scaffold0295 (34-244)||(537-749)
[»] chr5 (2 HSPs)
chr5 (261-312)||(41889399-41889450)
chr5 (68-150)||(41901542-41901626)
[»] chr7 (2 HSPs)
chr7 (20-101)||(15092209-15092290)
chr7 (87-244)||(7977605-7977764)


Alignment Details
Target: scaffold0105 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 109 - 413
Target Start/End: Original strand, 492 - 796
Alignment:
Q  109 tatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcaca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  492 tatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcaca 591  T
Q  209 acatctccttaaaatttgtcaaatatcttcttcagacatatcaatgaaatgactcaaatcaagtagctgcaaatttgggaatactgaagcaaacattttg 308  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  592 acatctacttaaaatttgtcaaatatcttcttcagacatatcaatgaaatgactcaaatcaagtagctgcaaatttgggaatactgaagcaaacattttg 691  T
Q  309 atgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattctctacacttc 408  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  692 atgtttttatcttttaacgcaccactgtcttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattctctacacttc 791  T
Q  409 ttatc 413  Q
    |||||    
T  792 ttatc 796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 299 - 413
Target Start/End: Original strand, 2073 - 2187
Alignment:
Q  299 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattc 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2073 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattc 2172  T
Q  399 tctacacttcttatc 413  Q
    |||||||||||||||    
T  2173 tctacacttcttatc 2187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 299 - 413
Target Start/End: Original strand, 6859 - 6973
Alignment:
Q  299 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattc 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6859 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattc 6958  T
Q  399 tctacacttcttatc 413  Q
    |||||||||||||||    
T  6959 tctacacttcttatc 6973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 299 - 413
Target Start/End: Original strand, 14224 - 14338
Alignment:
Q  299 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattc 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14224 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattc 14323  T
Q  399 tctacacttcttatc 413  Q
    |||||||||||||||    
T  14324 tctacacttcttatc 14338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 299 - 413
Target Start/End: Complemental strand, 50618 - 50504
Alignment:
Q  299 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattc 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50618 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattc 50519  T
Q  399 tctacacttcttatc 413  Q
    |||||||||||||||    
T  50518 tctacacttcttatc 50504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 299 - 413
Target Start/End: Complemental strand, 32220 - 32106
Alignment:
Q  299 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattc 398  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32220 aaacattttgatgtttttatcttttaatgcaccactgccttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattc 32121  T
Q  399 tctacacttcttatc 413  Q
    |||||||||||||||    
T  32120 tctacacttcttatc 32106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 34 - 413
Target Start/End: Complemental strand, 8184155 - 8183773
Alignment:
Q  34 acaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctttatcatctactttt--atgtgacaagttcaacgactcc 131  Q
    ||||||||||| | ||||||  ||||||||| | |||||||||||||| ||| |||||||| ||||||| ||| ||  ||||||||||||||||  |||     
T  8184155 acaattttccagtaacagttccaaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctct 8184056  T
Q  132 agtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacatctccttaaaatttgtcaaa 231  Q
    ||||| | |||||||||||||||| |||  ||||||| | ||| ||  || ||||||||||| |||||||| |||||||| ||||||||||||||   ||    
T  8184055 agtttcggaacttcaaagttcattctgctcagcctcatttttggaatgtaagctaagttcaaatctctaatctcacaacaactccttaaaatttgagtaa 8183956  T
Q  232 tatcttcttcagacatatcaatgaaatgactcaaatcaagtagctgcaaatttgggaatactgaagcaaacattttgatgtttttatcttttaacgcacc 331  Q
    || ||| |||||| || |||| | ||||||||||||||||  |||||||||| ||||| || ||||||||  |||||| |||||||||| |||||  ||     
T  8183955 tacctttttcagaaatgtcaaagcaatgactcaaatcaagccgctgcaaattggggaacacggaagcaaattttttgacgtttttatctgttaaccaacg 8183856  T
Q  332 actgccttgcaaac-tacgagactttatttgagggcttataacaatatccattaaagaattataattctctacacttcttatc 413  Q
    | ||  |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8183855 attgatttgcaaacttaagagactttatttgagggcttataacaatatccattaaagaattataattctctacacttcttatc 8183773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 21 - 291
Target Start/End: Complemental strand, 8187229 - 8186957
Alignment:
Q  21 ctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctttatcatctactttt--atgtgacaa 118  Q
    ||||||| |||| ||||||||||| | |||  || ||||||||| | ||||||||||| || ||| | |||| ||||||||| ||| ||  |||||||||    
T  8187229 ctgtgacgttacgacaattttccagtaacaactgcaaaagcccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaa 8187130  T
Q  119 gttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacatctcctt 218  Q
    |||||||  ||||||||| |||| |||||||||||||  |   ||||  ||||||| | | |||||||||||||| || ||||| |||||||||||| |     
T  8187129 gttcaacacctccagtttggaaatttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctcttc 8187030  T
Q  219 aaaatttgtcaaatatcttcttcagacatatcaatgaaatgactcaaatcaagtagctgcaaatttgggaata 291  Q
    |||| ||| |||||| |||||||||| || |||  | |||||||||||||||| | ||||||||| |||||||    
T  8187029 aaaacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcaaattggggaata 8186957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 326
Target Start/End: Original strand, 1600474 - 1600687
Alignment:
Q  113 tgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacat 212  Q
    |||||||||||||  ||||||||||  ||||||||||||||||   || ||| ||| | ||||| ||| |||||||||||| | |||||||| | || ||    
T  1600474 tgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggctaagttcaaatgtctaattttagaaaat 1600573  T
Q  213 ctccttaaaatttgtcaaatatcttcttcagacatatcaatgaaatgactcaaatcaagtagctgcaaatttgggaatact-gaagcaaacattttgatg 311  Q
    |||||||||| ||| |||||| |||||||||| || | |||| ||   ||||||||||| || |||||| ||||||| | | |||||||||||| ||||     
T  1600574 ctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaa-ttgggaaaattggaagcaaacattatgatc 1600672  T
Q  312 tttttatcttttaac 326  Q
    ||| |||||| ||||    
T  1600673 tttgtatcttgtaac 1600687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 104 - 244
Target Start/End: Original strand, 659755 - 659895
Alignment:
Q  104 acttttatgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatt 203  Q
    |||| |||||||||||||||||  ||| ||||| | ||||||||| || |||   |||||| || |||||||| |  |||||||||| || | ||||||     
T  659755 acttgtatgtgacaagttcaacacctctagtttgggaacttcaaaatttattactcgtagcttccctcttgaacagcaggctaagtttaaatatctaatg 659854  T
Q  204 tcacaacatctccttaaaatttgtcaaatatcttcttcaga 244  Q
    | ||||||||||||||||||||| | |||||||||||||||    
T  659855 ttacaacatctccttaaaatttgaccaatatcttcttcaga 659895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 7225900 - 7225809
Alignment:
Q  140 aacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacatctccttaaaatttgtcaaa 231  Q
    ||||||||||||||| ||||||||| ||||||||| | | |||| ||||||||| | |||||| | ||||||||||| ||||| ||| ||||    
T  7225900 aacttcaaagttcatgttgcgtagcttcactcttggacagtaggataagttcaaatgtctaatcttacaacatctccgtaaaacttgacaaa 7225809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 55908853 - 55908641
Alignment:
Q  34 acaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctttatcatctact--tttatgtgacaagttcaacgactcc 131  Q
    |||||||||||   ||||||||||||||||| | ||| |||||||||||  | |||||| || |||||| ||   | ||||||||||||| |||  |||     
T  55908853 acaattttccagaaacagttgtaaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctct 55908754  T
Q  132 agtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacatctccttaaaatttgtcaaa 231  Q
    | || || ||||| |||||| ||| |  ||||  ||||||||||| | |||||||| ||||| | |||||  | |||||||||||||| || ||  ||||    
T  55908753 aattcaggaactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaaatgtctaaccttacaacatctccttagaacttcacaaa 55908654  T
Q  232 tatcttcttcaga 244  Q
    || ||||||||||    
T  55908653 taccttcttcaga 55908641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 1548527 - 1548428
Alignment:
Q  56 aaaagcccagagcaactctttgagatcgcaaagagtgctttatcatc--tacttttatgtgacaagttcaacgactccagtttagaaacttcaaagttca 153  Q
    ||||||||| | ||||||||||||||| ||  ||||| || ||||||  ||||| |||||||||||||||||  ||||||||| | || |||||||||||    
T  1548527 aaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttca 1548428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 233
Target Start/End: Complemental strand, 53761816 - 53761696
Alignment:
Q  113 tgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacat 212  Q
    |||||||||||||| ||| || || | |||| |||||||||||     |||| ||||||||||| ||| |||||||||||| |  ||||| | |||||||    
T  53761816 tgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaacat 53761717  T
Q  213 ctccttaaaatttgtcaaata 233  Q
    |||||||||| ||| ||||||    
T  53761716 ctccttaaaacttgacaaata 53761696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 222
Target Start/End: Original strand, 553467 - 553643
Alignment:
Q  48 acagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctttatcatcta--cttttatgtgacaagttcaacgactccagtttagaaacttc 145  Q
    ||||||| ||||||||||| ||||||||||| ||| ||   ||||||| |||||| |  ||| ||  |||||||||||||  |||||||||   |||||     
T  553467 acagttgcaaaagcccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaacttt 553566  T
Q  146 aaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacatctccttaaaa 222  Q
    |||||||| | | |||| | ||||||||||| |   || ||||||||| | |||||| | ||||||| |||||||||    
T  553567 aaagttcaatgtacgtaacttcactcttgaacagcgggttaagttcaaatgtctaatgttacaacatgtccttaaaa 553643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 546909 - 547010
Alignment:
Q  56 aaaagcccagagcaactctttgagatcgcaaagagtgctttatcatctac--ttttatgtgacaagttcaacgactccagtttagaaacttcaaagttca 153  Q
    ||||||||| | ||||||||||||||| || |||||| || |||||  ||  || || |||||||||||| |  ||||| ||||| ||||||||||||||    
T  546909 aaaagcccacaacaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttca 547008  T
Q  154 tt 155  Q
    ||    
T  547009 tt 547010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 547204 - 547261
Alignment:
Q  349 gagactttatttgagggcttataacaatatccattaaagaattataattctctacact 406  Q
    ||||||| | ||||||||||| ||||| |||| | ||||||||| |||||||||||||    
T  547204 gagacttcaattgagggcttacaacaaaatccttgaaagaattagaattctctacact 547261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 1519227 - 1519144
Alignment:
Q  74 tttgagatcgcaaagagtgctttatcatctac--ttttatgtgacaagttcaacgactccagtttagaaacttcaaagttcatt 155  Q
    ||||||||| || |||||||||  ||||| ||  || |||||||||||||||||  ||| ||||| | ||||||||||||||||    
T  1519227 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcatt 1519144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 299 - 413
Target Start/End: Original strand, 6759 - 6873
Alignment:
Q  299 aaacattttgatgtttttatcttttaacgcaccactgccttgcaaactacgagactttatttgagggcttataacaatatccattaaagaattataattc 398  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6759 aaacattttgatgtttttatcttttaatgcaccactgccttgcaaactaagagactttatttgagggcttataacaatatccattaaagaattataattc 6858  T
Q  399 tctacacttcttatc 413  Q
    |||||||||||||||    
T  6859 tctacacttcttatc 6873  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 18315412 - 18315187
Alignment:
Q  20 tctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctttatcatctacttt--tatgtgaca 117  Q
    |||||||||| ||||||   ||||||| ||||||| ||||||| |   ||||||||||||||| || ||||||||| |||||| |||||  |||||||||    
T  18315412 tctgtgacatcacaacagcgttccaataacagttgcaaaagcctacgacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgaca 18315313  T
Q  118 agttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaa-aactaggctaagttcaattctctaatttcacaacatctcc 216  Q
    ||||||||  ||||||||| | ||||| ||||||||||   |||||| ||| |||||||  || | ||||||||||| | |||||| ||| |||| || |    
T  18315312 agttcaacacctccagtttgggaactttaaagttcattccacgtagcttcattcttgaatcacga-gctaagttcaactgtctaatctcagaacaacttc 18315214  T
Q  217 ttaaaatttgtcaaatatcttcttcag 243  Q
     ||||| ||| |||||| |||||||||    
T  18315213 gtaaaacttgacaaataccttcttcag 18315187  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 222
Target Start/End: Complemental strand, 34936299 - 34936098
Alignment:
Q  23 gtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctttatcatctactttt--atgtgacaagt 120  Q
    ||||||| |||||||||||  | | | ||||| |||||||||   |||||||||| ||| ||| |||||| ||||||||| ||| ||  || ||||||||    
T  34936299 gtgacatcacaacaattttgaagtaatagttgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagt 34936200  T
Q  121 tcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacatctccttaa 220  Q
     ||||  ||| ||||| | ||| |||||| ||||| || | ||  ||||| ||||| | | ||| |||| ||| | |||||| |||||||||||||||||    
T  34936199 ccaacacctctagttttggaacatcaaagatcattctgtgaaggttcacttttgaacaatcggccaagtacaaatgtctaatgtcacaacatctccttaa 34936100  T
Q  221 aa 222  Q
    ||    
T  34936099 aa 34936098  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 153
Target Start/End: Complemental strand, 17628114 - 17628018
Alignment:
Q  59 agcccagagcaactctttgagatcgcaaagagtgctttatcatctacttt--tatgtgacaagttcaacgactccagtttagaaacttcaaagttca 153  Q
    |||||| | ||| ||||||||||| ||  ||||||||||||||| ||| |  |||||||||||||||||  ||||| |||||||| || ||||||||    
T  17628114 agcccaaaacaattctttgagatcacacggagtgctttatcatcaactctagtatgtgacaagttcaacacctccaatttagaaagtttaaagttca 17628018  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 27922482 - 27922606
Alignment:
Q  34 acaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctttatcatctactttt--atgtgacaagttcaacgactcc 131  Q
    ||||||||| | ||||| ||  ||||||||| | |||||||||||||||  | | ||||||| |||||| || |||  || |||||||||||||  ||||    
T  27922482 acaattttcaagtgacaatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctcc 27922581  T
Q  132 agtttagaaacttcaaagttcattt 156  Q
    | ||| | |||||||||||||||||    
T  27922582 aatttgggaacttcaaagttcattt 27922606  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 155
Target Start/End: Original strand, 32151283 - 32151398
Alignment:
Q  42 ccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctttatcatcta--cttttatgtgacaagttcaacgactccagtttaga 139  Q
    ||||| ||||||| |||||||||   ||||||||||||||| || |||||| || |||||| |  ||| ||  ||||||||| |||  |||||| || ||    
T  32151283 ccaataacagttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattgga 32151382  T
Q  140 aacttcaaagttcatt 155  Q
    |||||| |||||||||    
T  32151383 aacttcgaagttcatt 32151398  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 32151501 - 32151553
Alignment:
Q  261 ctcaaatcaagtagctgcaaatttgggaatactgaagcaaacattttgatgtt 313  Q
    ||||||||||| || |||||||| ||||| |  ||||||||||||||||||||    
T  32151501 ctcaaatcaagcagttgcaaattagggaaaatggaagcaaacattttgatgtt 32151553  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 1037789 - 1037577
Alignment:
Q  34 acaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctttatcatctact--tttatgtgacaagttcaacgactcc 131  Q
    |||||||||||   ||||||||||||||||| | ||| |||||||||||  | |||||| || |||||| ||   | ||||||||||||| |||  |||     
T  1037789 acaattttccagaaacagttgtaaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctct 1037690  T
Q  132 agtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacatctccttaaaatttgtcaaa 231  Q
    | || || ||||| |||||| ||| |  ||||  ||||||||||| | |||||||| ||||| | |||||  | ||||||||||||||||| ||  ||||    
T  1037689 aattcaggaactttaaagtttattctaagtagtttcactcttgaatagtaggctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaa 1037590  T
Q  232 tatcttcttcaga 244  Q
    || ||||||||||    
T  1037589 taccttcttcaga 1037577  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 9411555 - 9411620
Alignment:
Q  261 ctcaaatcaagtagctgcaaatttgggaatactgaagcaaacattttgatgtttttatcttttaac 326  Q
    ||||||||||| ||||||||||| ||||| |  ||||||||| ||||||||||||||||| |||||    
T  9411555 ctcaaatcaagcagctgcaaattggggaaaatggaagcaaaccttttgatgtttttatctcttaac 9411620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 12102317 - 12102361
Alignment:
Q  109 tatgtgacaagttcaacgactccagtttagaaacttcaaagttca 153  Q
    |||||||||||||||||  ||||||||| | ||||||||||||||    
T  12102317 tatgtgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 51113920 - 51113700
Alignment:
Q  20 tctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctttatcatctac--ttttatgtgaca 117  Q
    ||||||||||   ||||||||| || | ||||||| ||||||||| | |||||||| |||||| || |||||| || |||||| ||  || ||| |||||    
T  51113920 tctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgaca 51113821  T
Q  118 agttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacatctcct 217  Q
    |||  |||  ||||||||| | | ||||||||||||||    ||||| ||| | ||||| | || ||||| ||||| |  ||||||| |||||||||| |    
T  51113820 agtctaacacctccagtttgggagcttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctt 51113721  T
Q  218 taaaatttgtcaaatatcttc 238  Q
    ||||| ||| |||||| ||||    
T  51113720 taaaacttgacaaataccttc 51113700  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 51764575 - 51764490
Alignment:
Q  24 tgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctttatcatctactttt 109  Q
    ||||||||  ||||| ||||| | | ||||| ||||||||  | ||| |||||||||||||| |||||| ||||||||| ||||||    
T  51764575 tgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctttgagatcgcatagagtgttttatcatcaactttt 51764490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 514624 - 514580
Alignment:
Q  261 ctcaaatcaagtagctgcaaatttgggaatactgaagcaaacatt 305  Q
    |||||||||| |||||||||||| ||||| | |||||||||||||    
T  514624 ctcaaatcaattagctgcaaattcgggaaaattgaagcaaacatt 514580  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 9586844 - 9586904
Alignment:
Q  266 atcaagtagctgcaaatttgggaatactgaagcaaacattttgatgtttttatcttttaac 326  Q
    |||||| ||||||||||| ||||| | ||||||||||||| |||||||||||||| |||||    
T  9586844 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctcttaac 9586904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 9581276 - 9581335
Alignment:
Q  266 atcaagtagctgcaaatttgggaatactgaagcaaacattttgatgtttttatcttttaa 325  Q
    |||||| ||||||||||| ||||| | ||||||||||||| |||||||||||||| ||||    
T  9581276 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctcttaa 9581335  T

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Target: scaffold0295 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 749 - 537
Alignment:
Q  34 acaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctttatcatc--tacttttatgtgacaagttcaacgactcc 131  Q
    ||||||||||| | |||||||||| |||||| | ||| |||| ||||||  | |||||| || ||||||   |||| ||||||||||||| |||  |||     
T  749 acaattttccagtaacagttgtaatagcccacaacaattcttcgagatcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctct 650  T
Q  132 agtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggctaagttcaattctctaatttcacaacatctccttaaaatttgtcaaa 231  Q
    | || || ||||| |||||| ||| |  ||||  ||||||||||| | |||||||| ||||| | ||||   | |||||||||||||| || ||  ||||    
T  649 aattcaggaactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaaatgtctagccttacaacatctccttagaacttcacaaa 550  T
Q  232 tatcttcttcaga 244  Q
    || ||||||||||    
T  549 taccttcttcaga 537  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 41889450 - 41889399
Alignment:
Q  261 ctcaaatcaagtagctgcaaatttgggaatactgaagcaaacattttgatgt 312  Q
    ||||||||||||||||||||||| ||||| |  |||||||||||| ||||||    
T  41889450 ctcaaatcaagtagctgcaaattagggaaaatggaagcaaacattatgatgt 41889399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 41901626 - 41901542
Alignment:
Q  68 caactctttgagatcgcaaagagtgctttatcatctactttt--atgtgacaagttcaacgactccagtttagaaacttcaaagt 150  Q
    |||||||||||||||  | | ||||||| |||||| ||||||  || |||||||||||||  ||||||||| | |||||||||||    
T  41901626 caactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 15092290 - 15092209
Alignment:
Q  20 tctgtgacattacaacaattttccaatgacagttgtaaaagcccagagcaactctttgagatcgcaaagagtgctttatcat 101  Q
    |||||||||||| |||||  ||| | | | ||||| ||||||||| | ||| |||||||||||||| |||||| ||||||||    
T  15092290 tctgtgacattataacaaaattcaagtaatagttgcaaaagcccacaacaattctttgagatcgcatagagtgttttatcat 15092209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 7977605 - 7977764
Alignment:
Q  87 agagtgctttatcatctactttt--atgtgacaagttcaacgactccagtttagaaacttcaaagttcattttgcgtagcctcactcttgaaaactaggc 184  Q
    |||||| ||||||||| ||| ||  ||||||||||||||| | ||| |||||  |||| || || ||||||   |||||  |||| |||||| |  ||||    
T  7977605 agagtgttttatcatcaactgttgtatgtgacaagttcaaagcctcgagtttgcaaacgtcgaatttcattccacgtagattcacccttgaacaacaggc 7977704  T
Q  185 taagttcaattctctaatttcacaacatctccttaaaatttgtcaaatatcttcttcaga 244  Q
    || ||| || | |||||| | ||||||||||||||||| ||| | |||| ||||||||||    
T  7977705 taggtttaaatgtctaatgttacaacatctccttaaaacttgaccaataccttcttcaga 7977764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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